Difference between revisions of "Bugs and fixes"
From Geos-chem
(→Issues resolved in GEOS-Chem v11-02) |
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|Chemistry | |Chemistry | ||
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| − | *[[FlexChem#Add_simplified_P.2FL_families_to_KPP|Add simplified prod/loss families to KPP to gain computational speedup]] | + | *[[FlexChem#Add_simplified_P.2FL_families_to_KPP|(v11-02a) Add simplified prod/loss families to KPP to gain computational speedup]] |
| − | *[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|Fixes to correct ALK4 lumping issue]] | + | *[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|(v11-02a) Fixes to correct ALK4 lumping issue]] |
| − | *[[Sulfate_aerosols#Fix_bug_in_CHEM_NIT_routine|Fix bug in CHEM_NIT routine]] | + | *[[Sulfate_aerosols#Fix_bug_in_CHEM_NIT_routine|(v11-02a) Fix bug in CHEM_NIT routine]] |
| − | *[[Sulfate_aerosols#Fix_error_in_production_of_SO4s.2C_NITs_in_SEASALT_CHEM_routine|Fix error in production of SO4s and NITs in SEASALT_CHEM routine]] | + | *[[Sulfate_aerosols#Fix_error_in_production_of_SO4s.2C_NITs_in_SEASALT_CHEM_routine|(v11-02a) Fix error in production of SO4s and NITs in SEASALT_CHEM routine]] |
| − | *[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|Fix for sulfate production in HET_DROP_CHEM]] | + | *[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|(v11-02a) Fix for sulfate production in HET_DROP_CHEM]] |
| − | *[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|Fix bugs in sulfate chemistry routines]] | + | *[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|(v11-02a) Fix bugs in sulfate chemistry routines]] |
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|[[Cloud convection]] | |[[Cloud convection]] | ||
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| − | *[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|Remove computational bottleneck in the convection module]] | + | *[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|(v11-02a) Remove computational bottleneck in the convection module]] |
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|Diagnostics | |Diagnostics | ||
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| − | *[[Particulate_matter_in_GEOS-Chem#Save_out_PM2.5_diagnostic_at_STP_conditions|Save out PM2.5 diagnostic at STP conditions]] | + | *[[Particulate_matter_in_GEOS-Chem#Save_out_PM2.5_diagnostic_at_STP_conditions|(v11-02a) Save out PM2.5 diagnostic at STP conditions]] |
| − | *[[GEOS-Chem_v11-01#Bugs_in_convective_flux_diagnostics_.28ND14.29|Bug fixes in convective flux diagnostics (ND14)]] | + | *[[GEOS-Chem_v11-01#Bugs_in_convective_flux_diagnostics_.28ND14.29|(v11-02a) Bug fixes in convective flux diagnostics (ND14)]] |
| − | *[[GEOS-Chem_v11-01#P.28OH.29_not_saved_out_in_ND22_diagnostic|Restore P(OH) in ND22 diagnostic]] | + | *[[GEOS-Chem_v11-01#P.28OH.29_not_saved_out_in_ND22_diagnostic|(v11-02a) Restore P(OH) in ND22 diagnostic]] |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Make_anthropogenic_emissions_diagnostics_3D|Make anthropogenic emissions diagnostics 3D]] | + | *[[Implementation_of_HEMCO_in_GEOS-Chem#Make_anthropogenic_emissions_diagnostics_3D|(v11-02a) Make anthropogenic emissions diagnostics 3D]] |
| − | *[[Tagged_CO_simulation#Fix_ND65_bugs_in_tagged_CO_simulation|Fix ND65 bugs in tagged CO simulation]] | + | *[[Tagged_CO_simulation#Fix_ND65_bugs_in_tagged_CO_simulation|(v11-02a) Fix ND65 bugs in tagged CO simulation]] |
| − | *[[Mineral_dust_aerosols#Bug_in_ND21_diagnostic_indexing_for_size-resolved_dust_species|Fix bug in ND21 diagnostic indexing for dust species]] | + | *[[Mineral_dust_aerosols#Bug_in_ND21_diagnostic_indexing_for_size-resolved_dust_species|(v11-02a) Fix bug in ND21 diagnostic indexing for dust species]] |
| − | *[[GEOS-Chem v11-02#Bug fixes for the ND50 timeseries diagnostic|Bug fixes for the ND50 timeseries diagnostic]] | + | *[[GEOS-Chem v11-02#Bug fixes for the ND50 timeseries diagnostic|(v11-02b) Bug fixes for the ND50 timeseries diagnostic]] |
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|Date and time (and related quantities) | |Date and time (and related quantities) | ||
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| − | *[[GEOS-Chem_v11-01#Bug_in_cos.28SZA.29_for_start_of_timestep|Fixed bug in computation of cosine of solar zenith angle]] | + | *[[GEOS-Chem_v11-01#Bug_in_cos.28SZA.29_for_start_of_timestep|(v11-02a) Fixed bug in computation of cosine of solar zenith angle]] |
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|[[Dry deposition|Dry]] and [[Wet deposition|wet deposition]] | |[[Dry deposition|Dry]] and [[Wet deposition|wet deposition]] | ||
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| − | *[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|Fix bug in computation of dry deposition aerodynamic resistance Ra]] | + | *[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|(v11-02a) Fix bug in computation of dry deposition aerodynamic resistance Ra]] |
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|[[HEMCO|Emissions (via HEMCO)]] | |[[HEMCO|Emissions (via HEMCO)]] | ||
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| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02a|Update to HEMCO v2.0.004]] | + | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02a|(v11-02a) Update to HEMCO v2.0.004]] |
| − | *[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|Default US emissions to NEI2011 after 2013]] | + | *[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|(v11-02a) Default US emissions to NEI2011 after 2013]] |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_computation_of_local_time_in_HCO_GetSuncos|Fixed bug in computation of local time in the HEMCO routine <tt>HCO_GetSuncos</tt>]] | + | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_computation_of_local_time_in_HCO_GetSuncos|(v11-02a) Fixed bug in computation of local time in the HEMCO routine <tt>HCO_GetSuncos</tt>]] |
| − | *[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|Fix acetone parameterization in hcox_seaflux_mod.F90]] | + | *[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|(v11-02a) Fix acetone parameterization in hcox_seaflux_mod.F90]] |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Change_DEP_RESERVOIR_time_cycling_option_to_C|Change DEP_RESERVOIR time cycling option to C]] | + | *[[Implementation_of_HEMCO_in_GEOS-Chem#Change_DEP_RESERVOIR_time_cycling_option_to_C|(v11-02a) Change DEP_RESERVOIR time cycling option to C]] |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Now_use_YYYYMMDDhhmm_format_for_time_stamp_values|Now use <tt>YYYYMMDDhhmm</tt> for time stamp values]] | + | *[[Implementation_of_HEMCO_in_GEOS-Chem#Now_use_YYYYMMDDhhmm_format_for_time_stamp_values|(v11-02b) Now use <tt>YYYYMMDDhhmm</tt> for time stamp values]] |
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|Fixes to facilitate running GEOS-Chem in HPC environments | |Fixes to facilitate running GEOS-Chem in HPC environments | ||
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| − | *[[UCX_chemistry_mechanism#Bug_fixes_for_running_UCX_in_ESMF_environment|Bug fixes for using UCX chemistry in the ESMF environment]] | + | *[[UCX_chemistry_mechanism#Bug_fixes_for_running_UCX_in_ESMF_environment|(v11-02a) Bug fixes for using UCX chemistry in the ESMF environment]] |
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|[[Nested Model Working Group|Nested-grid simulations]] | |[[Nested Model Working Group|Nested-grid simulations]] | ||
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| − | *[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|Fixed typo in nested-grid transport routine <tt>INIT_WINDOW</tt>]] | + | *[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|(v11-02a) Fixed typo in nested-grid transport routine <tt>INIT_WINDOW</tt>]] |
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|[[The NcdfUtilities package|netCDF]] and file I/O issues | |[[The NcdfUtilities package|netCDF]] and file I/O issues | ||
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| − | *[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]] | + | *[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|(v11-02a) Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]] |
| − | *[[The NcdfUtilities package#Enable_compression_in_netCDF-4_output_files|Enable data compression in netCDF-4 output files]] | + | *[[The NcdfUtilities package#Enable_compression_in_netCDF-4_output_files|(v11-02a) Enable data compression in netCDF-4 output files]] |
| − | *[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|HEMCO diagnostic and restart files now have an unlimited time dimension]] | + | *[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|(v11-02a) HEMCO diagnostic and restart files now have an unlimited time dimension]] |
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|Structural issues | |Structural issues | ||
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| − | *[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]] | + | *[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|(v11-02a) Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]] |
| − | *[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|Bug fix: Specifing <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]] | + | *[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|(v11-02a) Bug fix: Specifing <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]] |
| − | *[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> for a cleaner build sequence]] | + | *[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|(v11-02a) Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> for a cleaner build sequence]] |
| − | *[[GEOS-Chem v11-02#Print the version number to the log file|Print the version number to the log file]] | + | *[[GEOS-Chem v11-02#Print the version number to the log file|(v11-02a) Print the version number to the log file]] |
| − | *[[#Removed_the_NNPAR_parameter_from_CMN_SIZE_mod.F|Removed the <tt>NNPAR</tt> parameter from <tt>CMN_SIZE_mod.F</tt>]] | + | *[[#Removed_the_NNPAR_parameter_from_CMN_SIZE_mod.F|(v11-02a) Removed the <tt>NNPAR</tt> parameter from <tt>CMN_SIZE_mod.F</tt>]] |
| − | *[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt> in the wetdep module]] | + | *[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|(v11-02a) Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt> in the wetdep module]] |
| − | *[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|Removed obsolete fields of the <tt>Input_Opt</tt> object]] | + | *[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|(v11-02a) Removed obsolete fields of the <tt>Input_Opt</tt> object]] |
|} | |} | ||
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) | + | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 14:50, 14 April 2017 (UTC) |
== Issues resolved in GEOS-Chem v11-01 == | == Issues resolved in GEOS-Chem v11-01 == | ||
Revision as of 14:50, 14 April 2017
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
Please also be sure to visit our Common GEOS-Chem error messages wiki page for more general information about some frequently encountered errors. Also visit our Currently unresolved issues in GEOS-Chem wiki page to see a list of unresolved issues by GEOS-Chem version (and if they have been fixed in subsequent releases).
Contents
Issues resolved in GEOS-Chem v11-02
The bugs and technical issues listed below were resolved in GEOS-Chem v11-02. Also be sure to visit our Known issues caused by compiler bugs wiki page for a list of compiler-related issues and workarounds.
--Bob Yantosca (talk) 14:50, 14 April 2017 (UTC)
Issues resolved in GEOS-Chem v11-01
The bugs and technical issues listed below were resolved in GEOS-Chem v11-01. Also be sure to visit our Known issues caused by compiler bugs wiki page for a list of compiler-related issues and workarounds.
--Bob Yantosca (talk) 19:57, 23 January 2017 (UTC)
Issues resolved in GEOS-Chem v10-01
The following bugs and/or technical issues were resolved in GEOS-Chem v10-01. Also be sure to visit our Known issues caused by compiler bugs wiki page for a list of compiler-related issues and workarounds.
--Bob Y. (talk) 20:56, 26 October 2015 (UTC)
Issues resolved in GEOS-Chem v9-02
The following bugs and/or technical issues were resolved in GEOS-Chem v9-02. Also be sure to visit our Known issues caused by compiler bugs wiki page for a list of compiler-related issues and workarounds.
--Bob Y. (talk) 21:00, 26 October 2015 (UTC)
Bugs and fixes in older GEOS-Chem versions
For a complete list of bugs and fixes in older GEOS-Chem versions, please see our Bugs and fixes prior to v9-02 wiki page.
--Bob Y. 17:40, 16 April 2015 (EDT) --Bob Y. 14:11, 20 May 2014 (EDT)
