Difference between revisions of "Bugs and fixes"
(→Issues resolved in GEOS-Chem v10-01) |
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##[[Stratospheric_chemistry#Bug_fix_in_routine_GET_RATES_INTERP|Bug fix in GET_RATES_INTERP]] | ##[[Stratospheric_chemistry#Bug_fix_in_routine_GET_RATES_INTERP|Bug fix in GET_RATES_INTERP]] | ||
#Fixes for the photolysis mechanism: | #Fixes for the photolysis mechanism: | ||
− | ##[[ | + | ##[[FAST-J photolysis mechanism#Now_use_MAP_A2A_to_regrid_1x1_TOMS_O3_to_model_resolution|Now use MAP_A2A to regrid 1x1 TOMS O3 to model resolution]] |
− | ##[[ | + | ##[[FAST-J photolysis_mechanism#Bug_fix_for_determining_when_to_use_TOMS_O3_columns|Bug fix for determining when to use TOMS O3 columns]] |
##[[Development_of_Fast-JX_in_GEOS-Chem#Reactivation_of_bromine_species_photolysis_for_tropospheric_simulation|Reactivation of Br species photolysis in Fast-JX for tropospheric chemistry simulation]] | ##[[Development_of_Fast-JX_in_GEOS-Chem#Reactivation_of_bromine_species_photolysis_for_tropospheric_simulation|Reactivation of Br species photolysis in Fast-JX for tropospheric chemistry simulation]] | ||
##[[Development_of_Fast-JX_in_GEOS-Chem#Error_in_reducing_wavelength_bins_for_tropospheric_simulation|Fixed wavelength bin interpolation error in Fast-JX for tropospheric-only simulation]] | ##[[Development_of_Fast-JX_in_GEOS-Chem#Error_in_reducing_wavelength_bins_for_tropospheric_simulation|Fixed wavelength bin interpolation error in Fast-JX for tropospheric-only simulation]] | ||
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##[[Cloud_convection#Avoid_NaN_values_for_WASHFRAC_in_routine_DO_MERRA_CONVECTION|Avoid NaN values for WASHFRAC in routine DO_MERRA_CONVECTION]] | ##[[Cloud_convection#Avoid_NaN_values_for_WASHFRAC_in_routine_DO_MERRA_CONVECTION|Avoid NaN values for WASHFRAC in routine DO_MERRA_CONVECTION]] | ||
− | --[[User:Bmy|Bob Y.]] 14: | + | --[[User:Bmy|Bob Y.]] 14:10, 20 May 2014 (EDT) |
== Issues resolved in GEOS-Chem v9-02 == | == Issues resolved in GEOS-Chem v9-02 == |
Revision as of 18:10, 20 May 2014
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
Please also be sure to visit our Common GEOS-Chem error messages wiki page for more general information about some frequently encountered errors. Also visit our Currently unresolved issues in GEOS-Chem wiki page to see a list of unresolved issues by GEOS-Chem version (and if they have been fixed in subsequent releases).
Contents
- 1 Issues resolved in GEOS-Chem v10-01
- 2 Issues resolved in GEOS-Chem v9-02
- 3 Issues resolved in GEOS-Chem v9-01-03
- 4 Issues resolved in GEOS-Chem v9-01-02
- 5 Issues resolved in GEOS-Chem v9-01-01
- 6 Issues resolved in GEOS-Chem v8-03-02
- 7 Issues resolved in GEOS-Chem v8-03-01
- 8 Issues resolved in GEOS-Chem v8-02-04
- 9 Issues resolved in GEOS-Chem v8-02-03
- 10 Issues resolved in GEOS-Chem v8-02-02
- 11 Issues resolved in GEOS-Chem v8-02-01
- 12 Issues resolved in GEOS-Chem v8-01-04
- 13 Issues resolved in GEOS-Chem v8-01-03
- 14 Issues resolved in GEOS-Chem v8-01-02
- 15 Issues resolved in GEOS-Chem v8-01-01
- 16 Issues resolved in GEOS-Chem v7-04-13
- 17 Issues resolved in GEOS-Chem v7-04-10
Issues resolved in GEOS-Chem v10-01
- Fixes for the stratospheric chemistry module:
- Fixes for the photolysis mechanism:
- Fixes for full-chemistry, specialty, and aerosol microphysics simulations:
- Fixes to remove computational bottlenecks:
- Other miscellaneous fixes:
--Bob Y. 14:10, 20 May 2014 (EDT)
Issues resolved in GEOS-Chem v9-02
- Fixes for emissions modules:
- Bug fix for updated CAC emissions
- Bug fix for Br2 emissions
- Bug fix in regridding of anthro emissions
- Bug in MEGAN emissions when using MERRA or GEOS-FP
- Bug fix in nei2005_anthro_mod.F
- Bug fix in EMIS_STREETS_ANTHRO_05x0666
- Bug fixes in biofuel_mod.F and emfossil.F
- Bug fix for 3-hourly GFED3 emissions
- Fixed typo in Aerocom volcanic SO2 emissions routine
- Bug fixes in day-of-week computation
- Prevent negative emissions over Canada
- Minor bug fix in TOMAS sulfate emissions
- Bug fix for NEI2005 SO4 emissions in sulfate_mod.F
- Prevent LOG(0) error from occurring in soil NOx module
- Bug fix for biofuels when using RCP scenarios
- Fixes for dry deposition and wet deposition modules:
- Add missing DRYACET to globchem.dat mechanism file
- Bug fix in Henry's law constant
- Bug fix in definition of RIP, IEPOX drydep species
- Bug fix: Do not call PARANOX plume model for offline simulations
- Fix for parallelization bug in subroutine METERO (in drydep module)
- Fixed parallelization error in routine DRYFLX (in dry deposition module)
- Prevent bad drydep flux values from being passed to the soil NOx module
- Fixed minor bug in AD44 diagnostic in routine DRY DEPOSITION (sea salt aerosols)
- Fixes for met fields:
- Fixes for computational efficiency:
- Fixes for diagnostics:
- Fixes for specialty and microphysics simulations:
- Bug fixes for tagged CO simulation
- Bug fixes for nested Hg simulation
- Bug fix for reading OH file in offline simulations
- Now include emissions in the aerosol-only simulation when using non-local PBL mixing
- Avoid error in ISOROPIAII when using offline aerosol simulation
- Modifications for v9-02 tagged O3 simulation
- Fixes for wetland emissions in CH4 simulation
- Reactivate stratospheric P(Ox) in tagged Ox simulation
- Replace LD65 with LLTROP in tagged_ox_mod.F
- Several fixes for TOMAS aerosol microphysics
- Prevent error in POPs simulation when reading global OC
- Fixes for the photolysis mechanism:
- Other fixes:
--Bob Y. 14:53, 14 May 2014 (EDT)
Issues resolved in GEOS-Chem v9-01-03
- Bug fix for GLCO3 and GLPAN in standard mechanism
- Structural changes to clarify science behind washout
- Correct out-of-bounds error in offline aerosol simulation
- Bug fix for mass transport flux diagnostics
- Bug fix in ND67 sea level pressure diagnostic
- Bug fixes for nested-grid simulation
- Bug fix in streets_anthro_mod.F for offline simulations
- Bug fixes for dicarbonyls simulation
- Bug fixes for regional emission masks
--Bob Y. 10:19, 13 November 2012 (EST)
Issues resolved in GEOS-Chem v9-01-02
- Corrected mis-indexing error in partition.f caused by the dynamic tropopause
- Corrected out-of-bounds error in readchem.f
- Fix for mis-indexing issue in CSPEC restart file
- Various bug fixes for the offline Hg simulation
- Bug fixes for leap years when using GCAP met fields
- Minor bug fixes for emissions routines affecting offline simulations
- Minor bug fixes for emissions routines affecting offline simulations
- Fixes for better compatibility with the PGI compiler
- Washout fix for non-aerosol species
- Fix for GEIA emissions scaling factor over Botswana
- Fixed minor issues in MERRA cloud convection routine
- Fix for vertical regridding of offline OH for offline simulations
- Further bug fixes for the offline Hg simulation
- Further fixes for nested-grid simulations
- Fix for partitioning chemical species
- Bug fixes for biofuel emissions
- Fix bug in EDGAR ship emissions code
- Bug fix for ship NOx emissions
- Prevent out-of-bounds errors in ND01 and ND02 diagnostics (Rn-Pb-Be simulation)
- Do not use erroneous MEGAN AEF data for nested-grid simulations
--Melissa Payer 12:08, 21 November 2011 (EST)
--Bob Y. 12:05, 28 November 2011 (EST)
Issues resolved in GEOS-Chem v9-01-01
- Standardization of patches from v8-03-02
- Bug fix for biofuels in EPA/NEI05
- Important bug fixes for ship emissions
- Duplicate diagnostics
- Starting runs at times other than 00 GMT
- Fix ND15 for non-local PBL scheme
- Fix to prevent div-by-zero in sulfate_mod.f
- PEDGE-$ in timeseries diagnostics
- Running offline simulations on the GEOS-5 72L grid
- Fixes to improve efficiency in vdiff_mod.f90
- Typos in megan_mod.f
- Typos in edgar_mod.f
--Bob Y. 11:25, 18 February 2011 (EST)
Issues resolved in GEOS-Chem v8-03-02
- Fix for EPA/NEI 2005 emissions
- Minor fixes in gamap_mod.f
- Bug fix for ND42 diagnostic and ISORROPIA II
- Minor fix for AOD calculation
- Avoid using unallocated arrays in edgar_mod.f
- Transport fix for GEOS-5 nested grid simulations
--Bob Y. 16:53, 7 September 2010 (EDT)
Issues resolved in GEOS-Chem v8-03-01
- Patch to enable call to SOA PARA INIT
- Patch to fix declaration of IONIC in ISORROPIA_II
- Patch to fix bug in Aromatic SOA
- Patch to scale AOD diagnostic output to other wavelengths
- Photolysis now computed at midpoint of chemistry timestep
- Bug fix in ISORROPIA for offline aerosol
- Minor bug fix in SRCSO2
- Bug in GET_EMMONOT_MEGAN
- Bug in READ_ANTHRO_NH3
- Fix for initialization of EMEP ship emissions
- Bug fix in AVGPOLE
- Bug fix in EMITHIGH (carbon_mod.f)
- Fix to prevent numerical overflow in EXP function
--Bob Y. 15:05, 30 June 2010 (EDT)
Issues resolved in GEOS-Chem v8-02-04
- Memory issue with KPP
- Updated reactions in sulfate_mod.f
- Bug fix for EMEP ship emissions
- Minor fix for molecular weights in drydep_mod.f
- Bug fix in biomass_mod.f
- Minor bug fix in gamap_mod.f
- Fixes and updates in seasalt_mod.f
- Bug fix in emfossil.f for 0.5 x 0.666 nested grid tagged-CO option
- Bug fix in DIAG20 (diag_pl_mod.f)
- Div-by-zero error encountered in arsl1k.f
- Fix for diagnostic arrays in TPCORE
- MEGAN now uses MODIS LAI by default
--Bob Y. 16:29, 23 February 2010 (EST)
Issues resolved in GEOS-Chem v8-02-03
- Patch for KPP solver for v8-02-03
- Corrected Bond et al BC/OC emissions
- Several bug fixes in sulfate_mod.f
- Missing NOx data in S.E.-Asia
- Mis-calculation of Courant numbers in tpcore_fvdas_mod.f90
- Format problem in planeflight_mod.f
--Bob Y. 16:55, 4 February 2010 (EST)
Issues resolved in GEOS-Chem v8-02-02
- EPA/NEI inventory: reset other species to zero
- Scale factor for oceanic acetone for GEOS5 2x2.5 was fixed in GEOS-Chem v8-02-02.
- Bug with PRIVATE declaration in sulfate_mod.f
- Bug with online 2ndary aerosol
- Typo in HO2 uptake
--Bob Y. 16:40, 11 January 2010 (EST)
Issues resolved in GEOS-Chem v8-02-01
- Output selected tracers only for dry and wet deposition, convection and rain diagnotics
- On-the-fly regridding for 0.5x0.667 nested grids
- Bug with EMEP ship emissions for nested grids
- Bug in sulfate_mod.f to turn off biomass emissions
- Minor error in gamap_mod.f
- Bug fix for Streets emissions on 0.5x0.666 nested grid
--Bob Y. 09:55, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v8-01-04
- Seg fault in GEOS-5 China nested grid simulation
- Error message in partition.f
- Erroneous O3 diagnostic (ND45)
- Post-Release Patches
--Bob Y. 09:58, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v8-01-03
- TPCORE replaced with version based on GMI model
- Output of ND51 does not match output in the ctm.bpch file
- ND22 (J-value) diagnostic
- ND34 (biofuel emissions) diagnostic
- Change of location of calls to diagnostics in main.f
--Bob Y. 10:29, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v8-01-02
- Quick fix for GEOS-5 optical depth
- Please see the discussion about this quick fix for the GEOS-5 optical depths.
- NOTE: if you are using GEOS-Chem v8-01-04 or higher with the reprocessed GEOS-5 met fields, then you do not need to use this quick fix.
- Corrected labeling of SOA quantities in carbon_mod.f
- Double-substitution error in GET_ALK
- Robustness fix for reading anthropogenic SO2 and NH3
- Minor bug in gasconc.f & calcrate.f
- Minor bug in emfossil.f
- Fix for mass balance of HNO3 and NIT
- Bug in ND43
- Problem w/ ND65 diagnostic and dynamic tropopause
- Albedo diagnostic in GEOS-4
- Pressure diagnostic : PS-PTOP vs. PEDGE
- Minor bug in log file output
--Bob Y. 10:29, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v8-01-01
--Bob Y. 10:35, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v7-04-13
--Bob Y. 10:49, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v7-04-10
--Bob Y. 10:53, 12 January 2010 (EST)