Difference between revisions of "Bugs and fixes"
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The following bugs and/or technical issues were resolved in [[GEOS-Chem v10-01]]: | The following bugs and/or technical issues were resolved in [[GEOS-Chem v10-01]]: | ||
− | === | + | {| border=1 cellspacing=0 cellpadding=5 |
− | # | + | |-bgcolor="#CCCCCC" |
− | + | !width="250px"|Module or area | |
− | + | !width="750px"|Issue that was resolved | |
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− | + | |Stratospheric chemistry module | |
− | + | | | |
− | + | *[[Stratospheric_chemistry#Reduce_memory_footprint_of_the_stratospheric_chemistry_module|Reduce memory footprint of the stratospheric chemistry module]] | |
− | + | *[[Stratospheric_chemistry#Bug_fix_in_routine_GET_RATES_INTERP|Bug fix in GET_RATES_INTERP]] | |
− | + | *[[Bromine_chemistry_mechanism#Bugs_in_data_files_used_to_prescribe_stratospheric_Bry|Now read corrected stratospheric Bry data via HEMCO]] | |
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− | + | |Photolysis | |
− | + | | | |
− | + | *[[FAST-J photolysis mechanism#Now_use_MAP_A2A_to_regrid_1x1_TOMS_O3_to_model_resolution|Now use MAP_A2A to regrid 1x1 TOMS O3 to model resolution]] | |
− | + | *[[FAST-J photolysis_mechanism#Bug_fix_for_determining_when_to_use_TOMS_O3_columns|Bug fix for determining when to use TOMS O3 columns]] | |
− | + | *[[Development_of_Fast-JX_in_GEOS-Chem#Reactivation_of_bromine_species_photolysis_for_tropospheric_simulation|Reactivation of Br species photolysis in Fast-JX for tropospheric chemistry simulation]] | |
− | + | *[[Development_of_Fast-JX_in_GEOS-Chem#Error_in_reducing_wavelength_bins_for_tropospheric_simulation|Fixed wavelength bin interpolation error in Fast-JX for tropospheric-only simulation]] | |
− | # | + | *[[FAST-JX_v7.0_photolysis_mechanism#Now_use_proper_org.dat_file_with_data_for_multiple_wavelengths|Now use proper photolysis input file <tt>org.dat</tt>]] |
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− | #[[ | + | |NOx-Ox chemistry and nested grid simulations |
− | #[[ | + | | |
− | #[[ | + | *[[UCX_chemistry_mechanism#Modify_treatment_of_N2O5_.2B_H2O_reaction_in_calcrate.F|Modify treatment of N2O5+H2O reaction in calcrate.F]] |
− | #[[ | + | *[[Setting_up_GEOS-Chem_nested_grid_simulations#Parallelization_error_in_nested_grid_simulations|Fixed parallelization error in nested grid simulations]] |
− | + | *[[Ship_emissions#Fix_for_high_values_of_O3_dry_deposition|Fix for high values of O3 dry deposition]] | |
− | + | *[[New_isoprene_scheme#Remove_duplicate_GLYX_product_from_RIO2_reaction|Remove duplicate GLYX product from RIO2 reaction]] | |
− | + | *[[Sea_salt_aerosols#Bug_in_ND44_drydep_diagnostic_for_sea_salt_aerosols|Bug fix in ND44 drydep diagnostic for sea salt aerosols]] | |
− | + | *[[FAST-JX_v7.0_photolysis_mechanism#Final_recommendation_for_J.28HAC.29_and_J.28PAN.29|Implement final recommendation for J(HAC) and J(PAN)]] | |
+ | *[[FAST-JX_v7.0_photolysis_mechanism#Acetaldehyde_photolysis|Now use updated cross-sections for computing J(ALD2)]] | ||
+ | *[[Nested_Model_Working_Group#Bug_fixes_for_the_0.25x0.3125_nested_CH_simulation|Resolved technical issues for 0.25° x 0.3125° CH nested simulation]] | ||
+ | *[[GEOS-Chem_v10-01#Bug_fixes_and_and_updates_for_v10-01g|Bug fix for planeflight diagnostic when using chemistry timesteps < 15 min]] | ||
+ | *[[GEOS-Chem_v10-01#Bug_fixes_and_updates_for_v10-01i|Now call the planeflight diagnostic after chemistry, not after emissions]] | ||
+ | *[[Wet_deposition#Bug_fixes_for_scavenging_by_co-condensation|Bug fixes for wet scavenging by co-condensation]] | ||
+ | *[[Wet_deposition#Bugs_in_MERRA_wet_deposition|Fixes for bugs in wet deposition when using MERRA meteorology]] | ||
+ | *[[Dry_deposition#Remove_obsolete_ISN2_drydep_species|Remove obsolete ISN2 drydep species]] | ||
+ | *[[GEOS-Chem_v10-01#Fixed_typo_for_BROMOCARB_SEASON_in_HEMCO_configuration_files|Fixed typo for BROMOCARB_SEASON in HEMCO configuration files]] | ||
+ | *[[GEOS-Chem_v10-01#Fixes_for_the_0.25_x_0.3125_nested_EU_simulation_using_GEOS-FP_meteorology|Bug fixes for GEOS-FP nested EU simulation]] | ||
+ | *[[GEOS-Chem_v10-01#Additional_fixes_for_MERRA_wet_deposition|Fixes for wet deposition when using MERRA met fields]] | ||
+ | *[[GEOS-Chem_v10-01#Fix_AEFs_for_sesquiterpenes_in_the_SOA_simulation|Fix MEGAN AEF's for sesquiterpenes in the SOA simulation]] | ||
− | = | + | |-valign="top" |
− | + | |Specialty simulations | |
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− | + | *[[TOMAS_aerosol_microphysics#Reactivating_dust_tracers_in_TOMAS_simulations|Reactivating dust tracers in TOMAS simulations]] | |
− | + | *[[TOMAS_aerosol_microphysics#Prevent_sea_salt_from_being_emitted_over_ice_in_TOMAS|Prevent sea salt from being emitted over ice in TOMAS]] | |
− | + | *[[TOMAS_aerosol_microphysics#Fix_for_ND61_diagnostic|Fix for ND61 diagnostic in TOMAS simulations]] | |
− | + | *[[Global_Terrestrial_Mercury_Model#Fixed_library_linking_issue_when_building_GTMM_into_GEOS-Chem|Fixed library linking issue when building GTMM into GEOS-Chem]] | |
− | + | *[[CH4_simulation#Minor_fixes_to_CH4_simulation_for_MERRA_meteorology|Minor fixes to CH4 simulation for MERRA meteorology]] | |
− | + | *[[POPs_simulation#Avoid_div-by-zero_errors_in_POPs_simulation|Avoid div-by-zero errors in POPs simulation]] | |
− | + | *[[Tagged_CO_simulation#Bug_fixes_and_updates_for_tagged_CO_in_v9-02|Bug fixes and updates for tagged CO simulation in v9-02]] | |
− | + | *[[Mercury#Bug_in_tagged_Hg_emissions_in_v9-02|Fixed bug in tagged Hg emissions]] | |
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− | = | + | |-valign="top" |
− | + | |HEMCO emissions component | |
− | #[[ | + | | |
− | #[[ | + | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_for_segmentation_fault_when_emissions_are_turned_off|Prevent segmentation fault errors in HEMCO when emissions are turned off]] |
− | #[[ | + | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v10-01f|Add new functionality into HEMCO]] |
+ | *[[Ship_emissions#Bug_fixes_for_the_PARANOX_HEMCO_extension|Bug fixes for the PARANOX extension in HEMCO]] | ||
+ | *[[Regridding_in_GEOS-Chem#Error_in_regridding_regional_data_files|Bug fix for regridding of regional data files by HEMCO]] | ||
+ | *[[MEGAN v2.1 plus Guenther 2012 biogenic_emissions#Minor_bug_fix_in_MEGAN_Mono_extension|Prevent array out-of-bounds error if <tt>MEGAN_mono</tt> extension is turned off]] | ||
+ | *[[MEGAN_v2.1_plus_Guenther_2012_biogenic_emissions#Restore_missing_BIOGENIC_CO_diagnostics|Restore missing diagnostic: "Biogenic CO from monoterpenes"]] | ||
+ | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_during_the_public_comment_period_prior_to_v10-01_release|Additional HEMCO updates made during the v10-01 period of public comment]] | ||
+ | *[[GEOS-Chem_v10-01#Updated_name_of_ICOADS_SHIP_files_in_HEMCO_configuration_files|Fixed filename for ICOADS_SHIP in HEMCO configuration files]] | ||
+ | *[[GEOS-Chem v10-01#Avoid PARANOX SUNCOS error by using the proper timestamps|Fix for error in PARANOX caused by improper timestamps of SUNCOS]] | ||
+ | *[[GEOS-Chem_v10-01#Minor_fixes_for_FINNv1_biomass_burning|Minor fixes for FINNv1 biomass burning emissions]] | ||
+ | *[[GEOS-Chem_v10-01#Removing_additional_code_made_obsolete_by_HEMCO|Removing leftover code that was orphaned by HEMCO]] | ||
− | = | + | |-valign="top" |
− | + | |Removing computational bottlenecks | |
− | + | | | |
− | + | *[[Cloud convection#Removed array temporaries in call to FVDAS_CONVECT|Removed array temporaries in the call to the GEOS-4 convection routine]] | |
− | + | *[[GCAP#Removed_array_temporaries_in_call_to_GCAP_CONVECT|Removed array temporaries in the call to the GCAP convection routine]] | |
− | + | *[[Mercury#Remove_array_temporaries_in_routine_READ_HG2_PARTITIONING|Removed array temporaries in subroutine <tt>READ_HG2_PARTITIONING</tt>]] | |
− | + | *[[Advection_scheme_TPCORE#Reduce_time_spent_in_routine_TPCORE_FVDAS|Reduce time spent in advection driver routine TPCORE_FVDAS]] | |
− | + | ||
− | --[[User:Bmy|Bob Y.]] ([[User talk:Bmy|talk]]) 20:56, | + | |-valign="top" |
+ | |Miscellaneous | ||
+ | | | ||
+ | *[[GEOS-Chem_v9-02#Incorrect_value_of_molecular_weight_for_the_PROPNN_tracer_in_input.geos|Now use correct value of molecular weight for PROPNN tracer]] | ||
+ | *[[Installing_libraries_for_GEOS-Chem#How_GEOS-Chem_uses_nc-config_and_nf-config|Make the netCDF library linking process more portable]] | ||
+ | *[[Regridding_in_GEOS-Chem#Fix_for_optimization_error_discovered_in_v10-01h|Fix for optimization error discovered in v10-01h]] | ||
+ | *[[GEOS-Chem_v10-01#Bug_fix_in_I3_field_interpolation|Bug fix for I3 field interpolation]] | ||
+ | *[[GEOS-Chem_v10-01#Minor_bug_fix_in_gamap_mod.F|Bug fix in gamap_mod.F]] | ||
+ | *[[GEOS-Chem_v10-01#Bug_fixes_for_the_PGI_compiler|Bug fixes for the PGI compiler]] | ||
+ | *[[GEOS-Chem_v10-01#Other miscellaneous updates|Now use "percent" instead of "%" in data files]] | ||
+ | |||
+ | |} | ||
+ | |||
+ | --[[User:Bmy|Bob Y.]] ([[User talk:Bmy|talk]]) 20:56, 26 October 2015 (UTC) | ||
== Issues resolved in GEOS-Chem v9-02 == | == Issues resolved in GEOS-Chem v9-02 == |
Revision as of 20:56, 26 October 2015
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
Please also be sure to visit our Common GEOS-Chem error messages wiki page for more general information about some frequently encountered errors. Also visit our Currently unresolved issues in GEOS-Chem wiki page to see a list of unresolved issues by GEOS-Chem version (and if they have been fixed in subsequent releases).
Contents
Issues resolved in GEOS-Chem v11-01
The following bugs and/or technical issues were resolved in GEOS-Chem v11-01:
Module | Issue that was resolved |
---|---|
Chemistry | |
Cloud convection | |
Emissions (via HEMCO) | |
Met fields and derived quantities | |
RRTMG radiative transfer model | |
Specialty simulations | |
Structural updates | |
Wet deposition |
|
--Bob Y. (talk) 17:05, 26 October 2015 (UTC)
Issues resolved in GEOS-Chem v10-01
The following bugs and/or technical issues were resolved in GEOS-Chem v10-01:
--Bob Y. (talk) 20:56, 26 October 2015 (UTC)
Issues resolved in GEOS-Chem v9-02
The following bugs and/or technical issues were resolved in GEOS-Chem v9-02.
Fixes for emissions modules
- Bug fix for updated CAC emissions
- Bug fix for Br2 emissions
- Bug fix in regridding of anthro emissions
- Bug in MEGAN emissions when using MERRA or GEOS-FP
- Bug fix in nei2005_anthro_mod.F
- Bug fix in EMIS_STREETS_ANTHRO_05x0666
- Bug fixes in biofuel_mod.F and emfossil.F
- Bug fix for 3-hourly GFED3 emissions
- Fixed typo in Aerocom volcanic SO2 emissions routine
- Bug fixes in day-of-week computation
- Prevent negative emissions over Canada
- Minor bug fix in TOMAS sulfate emissions
- Bug fix for NEI2005 SO4 emissions in sulfate_mod.F
- Prevent LOG(0) error from occurring in soil NOx module
- Bug fix for biofuels when using RCP scenarios
Fixes for drydep and wetdep
- Add missing DRYACET to globchem.dat mechanism file
- Bug fix in Henry's law constant
- Bug fix in definition of RIP, IEPOX drydep species
- Bug fix: Do not call PARANOX plume model for offline simulations
- Fix for parallelization bug in subroutine METERO (in drydep module)
- Fixed parallelization error in routine DRYFLX (in dry deposition module)
- Prevent bad drydep flux values from being passed to the soil NOx module
- Fixed minor bug in AD44 diagnostic in routine DRY DEPOSITION (sea salt aerosols)
Fixes for met fields
- Correction for GEOS-5 PBL heights
- Reset NaNs in MOISTQ to zero
- Convert MERRA and GEOS-FP relative humidity fields to percent after reading from disk
- Bug fix for declaration of certain GEOS-FP met fields
Fixes for computational efficiency
- Eliminate inefficient subroutine calls
- Corrected several floating-point errors
- Eliminate array temporaries in pjc_pfix_mod.F and pressure_mod.F
- Eliminate array temporaries in GCAP convection module
Fixes for diagnostics
- Bug fix in hdf_mod.F
- Bug fixes in diag48_mod.F
- Bug fix in ND36 diagnostic when ship emissions are turned off
Fixes for specialty and microphysics simulations
- Bug fixes for tagged CO simulation
- Bug fixes for nested Hg simulation
- Bug fix for reading OH file in offline simulations
- Now include emissions in the aerosol-only simulation when using non-local PBL mixing
- Avoid error in ISOROPIAII when using offline aerosol simulation
- Modifications for v9-02 tagged O3 simulation
- Fixes for wetland emissions in CH4 simulation
- Reactivate stratospheric P(Ox) in tagged Ox simulation
- Replace LD65 with LLTROP in tagged_ox_mod.F
- Several fixes for TOMAS aerosol microphysics
- Prevent error in POPs simulation when reading global OC
Fixes for the photolysis mechanism
- Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data
- Add fix to jv_spec_aod.dat file
- Post-release patch to fix bug in acetone photolysis pressure dependency
Other fixes
- Additional bug fixes for MAP_A2A regridding
- Bug fix in grid_mod.F90
- Fixed typos in GCAP code
- Reactivate parallel DO loop in LINOZ_CHEMO3 routine
- Corrected unit conversion bug when TURBDAY PBL mixing is used
- Fixes for minor technical issues
Bugs and fixes in older GEOS-Chem versions
For a complete list of bugs and fixes in older GEOS-Chem versions, please see our Bugs and fixes prior to v9-02 wiki page.
--Bob Y. 17:40, 16 April 2015 (EDT) --Bob Y. 14:11, 20 May 2014 (EDT)