Difference between revisions of "GEOS-Chem v10-01"

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(Fixed library linking issue that prevented GTMM from being built into GEOS-Chem)
(Bug fix for determining when to use TOMS O3 columns)
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--[[User:Bmy|Bob Y.]] 15:57, 12 March 2014 (EDT)
 
--[[User:Bmy|Bob Y.]] 15:57, 12 March 2014 (EDT)
 
 
  
 
=== Speed up computations in the Olson land map module ===
 
=== Speed up computations in the Olson land map module ===

Revision as of 20:51, 11 April 2014

Overview

History

The table below shows the previous, current, and successive versions of GEOS-Chem:

Previous version This version Next version
GEOS-Chem v9-02 GEOS-Chem v10-01 TBD
PUBLIC RELEASE 03 Mar 2014 TBD TBD
View v9-02 benchmark history View v10-01 benchmark history TBD

--Bob Y. 13:17, 16 January 2014 (EST)

What's new in this version

GEOS-Chem v10-01 will be released after a fixed interval of time (approxmiately 9 months after the release of the prior version, GEOS-Chem v9-02). The GEOS-Chem Steering Committee has prioritized the following updates and improvements for inclusion into GEOS-Chem v10-01. (This list is subject to change.) Updates that do not get included into GEOS-Chem v10-01 will be held over for the next version.

NOTE: v10-01a, v10-02b, etc. denote 1-month benchmark simulations, which are designed to evaluate GEOS-Chem's performance at intermediate stages of development.
Alternating stripes of color (white & cyan) in the table below group together features that were evaluated in the same 1-month benchmark.

Feature Type Submitted by Benchmark(s) Status
Updates to dry deposition when using the Olson 2001 land map Science Patrick Kim (Harvard) v10-01a Approved 05 Feb 2014
Now use correct molecular weight for the PROPNN tracer in input.geos Bug fix Jenny Fisher (U. Wollongong) v10-01b Approved 06 Mar 2014
Use MAP_A2A to regrid 1x1 TOMS O3 to model resolution Bug fix Jintai Lin (Peking U.) " " " "
UCX strat chem mechanism, includes: Science UCX: Sebastian Eastham (MIT)
Fast-JX: Jingqiu Mao (Princeton)
v10-01c In progress
Bug fix for determining when to use TOMS O3 columns Bug fix GEOS-Chem Support Team " " " "
Add support for TAU performance profiler Structural John Linford (ParaTools, Inc.)
GEOS-Chem Support Team
" " " "
Fixes for the stratospheric chemistry module Structural GEOS-Chem Support Team " " " "
Various updates for GEOS-Chem specialty simulations Bug fix &
Structural
Jeff Pierce (CSU)
Kevin Wecht (Harvard)
Matthew Johnson (NASA)
GEOS-Chem Support Team
" " " "
HEMCO emissions component Structural Christoph Keller (Harvard)
GEOS-Chem Support Team
GMAO
TBD TBD
Online Radiative Transfer in GEOS-Chem Science David Ridley (MIT)
Colette Heald (MIT)
TBD TBD
NEI 2008 emissions with hourly resolution Science Katie Travis (Harvard) TBD TBD
Update to MEGAN2.1 Science Dylan Millet (U. Minnesota) TBD TBD
Update to EDGAR 4.2 anthropogenic emissions Science Meng Li and Qiang Zhang (Tsinghua)
Sajeev Philip (Dalhousie)
TBD TBD
PAN / Organics Science Emily Fischer (CSU) TBD TBD
CO2 direct effect on isoprene emissions Science Amos Tai (The Chinese University of Hong Kong) TBD TBD
Arctic Hg cycling Science Jenny Fisher (U. Wollongong) TBD TBD
Criegee intermediate Science Dylan Millet (U. Minnesota) TBD TBD
Impaction scavenging for hydrophobic BC Science Qiaoqiao Wang (formerly Harvard, now Max-Planck Institute) TBD TBD
Homogeneous IN removal Science Qiaoqiao Wang (formerly Harvard, now Max-Planck Institute) TBD TBD
MASAGE NH3 inventory Science Fabien Paulot (Harvard) TBD TBD
HTAP and hi-res Asian emissions Science Qiang Zhang (Tsinghua U.) TBD TBD
Two-way coupling between global and nested GEOS-Chem models Science Jintai Lin (Peking U.) TBD TBD
Improve temporal resolution of anthropogenic CO2 sources Science Ray Nassar (Environment Canada) TBD TBD
Replace CASA CO2 biosphere climatology with year-specific fluxes Science Ray Nassar (Environment Canada)
Dylan Jones (U. Toronto)
TBD TBD
Acid uptake on dust aerosols Science T. Duncan Fairlie (NASA/LARC) TBD TBD
UNEP 2010 anthropogenic Hg emissions Science Shaojie Song (MIT) TBD TBD
Historical anthropogenic atmospheric emissions of Hg Science Bess Corbitt (Harvard) TBD TBD
Subsurface ocean Hg concentration update Science Anne Soerensen (Harvard) TBD TBD
NEI 2008 Hg emission inventory Science Yanxu Zhang (Harvard) TBD TBD
RRTMG radiative transfer code in APM aerosol microphysics Science Fangqun Yu (SUNY Albany) TBD TBD
Interannual lightning Science Lee Murray (Harvard) TBD TBD
FINN biomass burning emissions Science Jenny Fisher (U. Wollongong)
Min Huang (JPL)
TBD TBD
Updates to PAH code Science Carey Friedman (MIT)
Helen Amos (Harvard)
TBD TBD
Improved dust size distribution scheme Science Li Zhang (Colorado U.)
Daven Henze (Colorado U.)
TBD TBD
Update EMEP emissions for 2008-2010 Science Aaron van Donkelaar (Dalhousie) TBD TBD

--Melissa Sulprizio 11:18, 5 March 2014 (EST)

New data directories

The following new data directories have been added for GEOS-Chem v10-01. You will have to download the directories relevant to your simulation.

You can download these directories with anonymous FTP or the Wget utility. For instructions, please see Chapter 2.4, Downloading the GEOS-Chem shared data directories in the GEOS-Chem Online User's Guide.

GEOS_NATIVE/UCX_201403                    # Input files for the UCX mechanism

--Melissa Sulprizio 15:24, 24 February 2014 (EST)

Previous issues now resolved in GEOS-Chem v10-01

Now use correct value of molecular weight for the PROPNN tracer in input.geos

This update was tested in the 1-month benchmark simulation v10-01b and approved on 06 Mar 2014.

This unresolved issue from GEOS-Chem v9-02 has now been corrected.

--Bob Y. 15:45, 12 March 2014 (EDT)

Now use MAP_A2A to regrid 1x1 TOMS O3 to model resolution

This update was tested in the 1-month benchmark simulation v10-01b and approved on 06 Mar 2014.

For complete information about this issue, please see this post on our Photolysis mechanism wiki page.

--Bob Y. 15:47, 12 March 2014 (EDT)

Bug fix for determining when to use TOMS O3 columns

This update is being tested in the 1-month benchmark simulation v10-01c.

For complete information about this issue, please see this post on our Photolysis mechanism wiki page.

--Bob Y. 15:57, 12 March 2014 (EDT)

Speed up computations in the Olson land map module

This update is being tested in the 1-month benchmark simulation v10-01c.

Using the Tuning and Analysis Utilities (TAU) software, we have found and fixed a computational bottleneck in routine COMPUTE_OLSON_LANDMAP (in module file GeosCore/olson_landmap_mod.F90). For a full description of this issue, please see this post on our Olson land map wiki page.

--Bob Y. 10:49, 21 March 2014 (EDT)

Fixes for the stratospheric chemistry module

We have introduced the following fixes to the stratospheric chemistry module. Please see the following posts for more information:

  1. Reduce memory footprint of the stratospheric chemistry module
  2. Bug fix in routine GET_RATES_INTERP. affecting nested-grid simulations

--Bob Y. 15:33, 11 April 2014 (EDT)

Various updates for GEOS-Chem specialty simulations

We have added several updates (both structural updates and minor bug fixes) to the GEOS-Chem specialty simulations. Please view the following posts for more information:

Simulation Status Updates
C2H6 simulation Needs attention
  • The C2H6 simulation is initialized with a call from routine GIGC_Init_Extra in module GeosCore/input_mod.F.
CH4 simulation Up-to-date
HCN/CH3CN simulation Needs attention
  • The HCN/CH3CN simulation is initialized with a call from routine GIGC_Init_Extra in module GeosCore/input_mod.F.
Tagged CO simulation Up-to-date
Hg + Global Terrestrial Mercury Model Up-to-date
Tagged O3 simulation Up-to-date
TOMAS aerosol microphysics Up-to-date

NOTE: Initializing the various specialty simulations from routine GIGC_Init_Extra is necessaary for compatibility with our Grid-Independent GEOS-Chem (aka GIGC) development. We need to initialize all GEOS-Chem simulations at the start of the simulation, and not on the first chemistry or emissiosn timestep after the simulation has already started. This is a requirement of the Earth System Model Framework (ESMF) software upon which our GIGC code relies.

--Bob Y. 16:02, 11 April 2014 (EDT)

Outstanding issues not yet resolved in GEOS-Chem v10-01

TBD