Difference between revisions of "GEOS-Chem v10-01 benchmark history"
(→v10-01d) |
(→v10-01d) |
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Line 18: | Line 18: | ||
|New features added into GEOS-Chem: | |New features added into GEOS-Chem: | ||
| | | | ||
− | Features affecting the full-chemistry simulation | + | Features affecting the full-chemistry simulation in this benchmark: |
*[[New_isoprene_scheme#Remove_duplicate_GLYX_product_from_RIO2_reaction|Fix error in ISOPO2 isomerization reaction in globchem.dat]] | *[[New_isoprene_scheme#Remove_duplicate_GLYX_product_from_RIO2_reaction|Fix error in ISOPO2 isomerization reaction in globchem.dat]] | ||
*[[FAST-JX_v7.0_photolysis_mechanism#Final_recommendation_for_J.28HAC.29_and_J.28PAN.29|Implement final recommendation for J(HAC) and J(PAN) in FAST-JX v7.0]] | *[[FAST-JX_v7.0_photolysis_mechanism#Final_recommendation_for_J.28HAC.29_and_J.28PAN.29|Implement final recommendation for J(HAC) and J(PAN) in FAST-JX v7.0]] | ||
− | Features not affecting the full-chemistry simulation | + | Features not affecting the full-chemistry simulation in this benchmark: |
*[[GEOS-Chem v10-01#Bug fixes and and updates for v10-01d|Modify NcdfUtil code to allow re-opening of netCDF "define mode"]] | *[[GEOS-Chem v10-01#Bug fixes and and updates for v10-01d|Modify NcdfUtil code to allow re-opening of netCDF "define mode"]] | ||
*[[Setting_up_GEOS-Chem_nested_grid_simulations#Parallelization_error_in_nested_grid_simulations|Fix parallelization error in nested grid simulations]] | *[[Setting_up_GEOS-Chem_nested_grid_simulations#Parallelization_error_in_nested_grid_simulations|Fix parallelization error in nested grid simulations]] | ||
Line 52: | Line 52: | ||
|This update will impact:<br>(select all that apply with '''boldface''') | |This update will impact:<br>(select all that apply with '''boldface''') | ||
|Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, '''Photolysis''', '''Chemistry''', Other (please specify): | |Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, '''Photolysis''', '''Chemistry''', Other (please specify): | ||
+ | |- | ||
+ | |[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | ||
+ | |<tt>ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01d/v10-01d.results.html</tt> | ||
|- | |- | ||
|Plots may be viewed at: | |Plots may be viewed at: | ||
− | |<tt>ftp://ftp.as.harvard.edu/ | + | |<tt>ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01d/</tt> |
|-bgcolor="#cccccc" | |-bgcolor="#cccccc" | ||
!Metrics | !Metrics | ||
Line 73: | Line 76: | ||
|Comments on SURFACE differences: | |Comments on SURFACE differences: | ||
| | | | ||
+ | *HAC shows large increases at the surface, due to the fix for J(HAC) added to this version. | ||
+ | *Large percent differences for the other species listed here (particularly for ISOP and its oxidation products) occur in places where the concentrations of these species are very low. | ||
|- | |- | ||
|At 500 hPa, list all species that changed by 10% or more: | |At 500 hPa, list all species that changed by 10% or more: | ||
Line 79: | Line 84: | ||
|Comments on 500 hPa differences: | |Comments on 500 hPa differences: | ||
| | | | ||
+ | *HAC shows large increases at the surface, due to the fix for J(HAC) added to this version. | ||
+ | *Large percent differences for the other species listed here (particularly for ISOP and its oxidation products) occur in places where the concentrations of these species are very low. | ||
|- | |- | ||
|In the ZONAL MEAN differences, list all species that changed by 10% or more: | |In the ZONAL MEAN differences, list all species that changed by 10% or more: | ||
Line 85: | Line 92: | ||
|Comments on ZONAL MEAN differences: | |Comments on ZONAL MEAN differences: | ||
| | | | ||
+ | *HAC shows large zonal mean differences, due to the fix for J(HAC) added to this version. | ||
+ | *Several species (particularly ISOP and its oxidation products) show large percent differences but small (~0.1 ppbv) absolute differences. | ||
+ | *The "numerical noise" patterns in the NH3 and NIT percent differences may be attributed to [[ISORROPIA II]]. | ||
|- | |- | ||
|In the EMISSION RATIO maps, list all species that changed by 10% or more: | |In the EMISSION RATIO maps, list all species that changed by 10% or more: | ||
Line 91: | Line 101: | ||
|Comments on EMISSION RATIO differences: | |Comments on EMISSION RATIO differences: | ||
| | | | ||
+ | *None needed. | ||
|- | |- | ||
|Additional or summary comments: | |Additional or summary comments: | ||
Line 99: | Line 110: | ||
|- | |- | ||
|Requires further investigation: | |Requires further investigation: | ||
− | | | + | |NO |
|- | |- | ||
|Approved by: | |Approved by: | ||
− | | | + | |Melissa Sulprizio and Bob Yantosca |
|- | |- | ||
|Date of approval: | |Date of approval: | ||
− | | | + | |03 Jun 2014 |
|} | |} | ||
− | --[[User:Melissa Payer|Melissa Sulprizio]] 14:47, 2 June 2014 (EDT) | + | --[[User:Melissa Payer|Melissa Sulprizio]] 14:47, 2 June 2014 (EDT)<br> |
+ | --[[User:Bmy|Bob Y.]] 11:39, 3 June 2014 (EDT) | ||
=== v10-01c === | === v10-01c === |
Revision as of 15:39, 3 June 2014
On this page we have posted complete information about all benchmark simulations (both 1-month and 1-year) for GEOS-Chem v10-01.
Contents
1-yr benchmarks
TBD
1-month benchmarks
v10-01d
Here is the assessment form for 1-month benchmark simulation v10-01d.
Description | |
---|---|
New features added into GEOS-Chem: |
Features affecting the full-chemistry simulation in this benchmark:
Features not affecting the full-chemistry simulation in this benchmark: |
Developer name(s) and institution(s): |
|
Version, resolution, met fields used: | v10-01, GEOS-FP (72L), 4x5, July 2013 |
1-month benchmark finished on: | Mon Jun 2 20:00:41 EDT 2014 |
Performance statistics: |
|
Compared to previous benchmark: | v10-01c with UCX chemistry |
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): |
Unit test results may be viewed at: | ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01d/v10-01d.results.html |
Plots may be viewed at: | ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01d/ |
Metrics | |
Global mean OH (from log file): | 13.0813437885412 x 105 molec/cm3 |
Methyl chloroform lifetime: | 4.7621 years |
Did either of these change by more than 5%? | No. The mean OH differs by -0.25%, and the MCF lifetime differs by 0.34%. |
At the SURFACE, list all species that changed by 10% or more: | NO, PAN, ISOP, H2O2, MVK, MACR, PMN, PRPE, CH2O, N2O5, HNO4, MP, DMS, NIT, DST4, Br, ISOPN, MOBA, HAC, GLYC, MMN, RIP, IEPOX, MAP, Cl, OClO, Cl2O2, HO2 |
Comments on SURFACE differences: |
|
At 500 hPa, list all species that changed by 10% or more: | NO, ISOP, MVK, MACR, PMN, PRPE, CH2O, N2O5, DMS, NH3, NIT, DST4, BrNO2, ISOPN, MOBA, HAC, GLYC, MMN, RIP, IEPOX, MAP, Cl, OClO, Cl2O2 |
Comments on 500 hPa differences: |
|
In the ZONAL MEAN differences, list all species that changed by 10% or more: | PAN, ALK4, ISOP, MVK, MACR, PMN, PRPE, C3H8, N2O5, SO4s, NH3, NIT, NITs, DST2, DST3, SALC, Br, BrNO3, ISOPN, MOBA, HAC, MMN, RIP, IEPOX, MAP, OCS, CCl4, CH3CCl3, CFC11, H1211, H1301, H2402, Cl, ClNO2, Cl2O2, |
Comments on ZONAL MEAN differences: |
|
In the EMISSION RATIO maps, list all species that changed by 10% or more: | None |
Comments on EMISSION RATIO differences: |
|
Additional or summary comments: | |
Approval | |
Requires further investigation: | NO |
Approved by: | Melissa Sulprizio and Bob Yantosca |
Date of approval: | 03 Jun 2014 |
--Melissa Sulprizio 14:47, 2 June 2014 (EDT)
--Bob Y. 11:39, 3 June 2014 (EDT)
v10-01c
Because GEOS-Chem v10-01c was the version where we introduced the UCX chemistry mechanism, we performed two 1-month benchmark simulations:
- v10-01c_trop: 1-month benchmark with tropopsheric chemistry
- v10-01c_UCX: 1-month benchmark with UCX strat-trop chemistry (72 vertical levels)
--Bob Y. 13:15, 30 May 2014 (EDT)
Final recommendation for J-values
We were not able to include this final recommendation for J(HAC) and J(PAN) into the v10-01c_trop and v10-01c_UCX 1-month benchmarks. We will include these in the 1-year benchmarks for v10-01c.
--Bob Y. 17:16, 30 May 2014 (EDT)
1-month benchmark with UCX chemistry
Here is the assessment form for 1-month benchmark simulation v10-01c with UCX chemistry (aka v10-01c_UCX).
Description | |
---|---|
New features added into GEOS-Chem: |
Features affecting the chemistry in this benchmark:
Features not affecting the chemistry in this benchmark:
|
Developer name(s) and institution(s): |
|
Version, resolution, met fields used: | v10-01, GEOS-FP (72L), 4x5, July 2013 |
1-month benchmark finished on: | Thu May 29 00:01:33 2014 |
Performance statistics: |
|
Compared to previous benchmark: | v10-01c with tropospheric chemistry |
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): |
Unit test results may be viewed at: | ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01c/v10-01c_UCX/v10-01c_Final.results.html |
Plots may be viewed at: | ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01c/v10-01c_UCX/ |
Metrics | |
Global mean OH (from log file): | 13.1136815995777 x 105 molec/cm3 |
Methyl chloroform lifetime: | 4.7459 years |
Did either of these change by more than 5%? | No. The mean OH differs by -3.77%, and the MCF lifetimes differ by 0.23%. |
At the SURFACE, list all species that changed by 10% or more: | NO, PAN, ALK4, ISOP, HNO3, H2O2, MEK, RCHO, MVK, MACR, PMN, PPN, PRPE, N2O5, HNO4, MP, DMS, SO4s, NH3, NIT, NITs, DST4, Br2, Br, BrO, HBr, BrNO2, BrNO3, MPN, ISOPN, MOBA, HAC, GLYC, MMN, RIP, IEPOX, NO2, NO3, HNO2, OH, HO2 |
Comments on SURFACE differences: |
|
At 500 hPa, list all species that changed by 10% or more: | NO, ALK4, ISOP, HNO3, MEK, RCHO, MVK, MACR, PMN, PRPE, C3H8, N2O5, HNO4, MP, DMS, SO2, NH3, NIT, NITs, DST4, Br2, Br, BrO, HBr, BrNO2, BrNO3, MPN, ISOPN, MOBA, HAC, GLYC, MMN, RIP, IEPOX, NO2, NO3, HNO2, OH, HO2 |
Comments on 500 hPa differences: |
|
In the ZONAL MEAN differences, list all species that changed by 10% or more: | All species, except for MSA and OCPI, changed by 10% or more. |
Comments on ZONAL MEAN differences: |
|
In the EMISSION RATIO maps, list all species that changed by 10% or more: | None |
Comments on EMISSION RATIO differences: |
|
Additional or summary comments: |
|
Approval | |
Requires further investigation: | NO |
Approved by: | Daniel Jacob, Jingqiu Mao, Sebastian Eastham |
Date of approval: | 29 May 2014 |
--Bob Y. 13:11, 30 May 2014 (EDT)
1-month benchmark with tropospheric chemistry
Here is the assessment form for 1-month benchmark simulation v10-01c with tropospheric chemistry (i.e. UCX off, aka v10-01c_trop).
Description | |
---|---|
New features added into GEOS-Chem: |
Features affecting the chemistry in this benchmark: Features not affecting the chemistry in this benchmark:
|
Developer name(s) and institution(s): |
|
Version, resolution, met fields used: | v10-01, GEOS-FP (47L), 4x5, July 2013 |
1-month benchmark finished on: | Wed May 28 17:57:45 2014 |
Performance statistics: |
|
Compared to previous benchmark: | v10-01b |
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): |
Unit test results may be viewed at: | ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01c/v10-01c_trop/v10-01c_Final.results.html |
Plots may be viewed at: | ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01c/v10-01c_trop |
Metrics | |
Global mean OH (from log file): | 13.6273583437531 x 105 molec/cm3 |
Methyl chloroform lifetime: | 4.7349 years |
Did either of these change by more than 5%? | No. The mean OH differs by -0.77%, and the MCF lifetimes differ by 1.37%. |
At the SURFACE, list all species that changed by 10% or more: | NO, PAN, ALK4, ISOP, H2O2, MEK, RCHO, MVK, MACR, PMN, PPN, PRPE, CH2O, N2O5, HNO4, MP, DMS, NIT, DST4, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPN, MOBA, PROPNN, HAC, GLYC, MMN, RIP, IEPOX, MAP, NO3, HNO2, OH, HO2 |
Comments on surface differences: |
|
At 500 hPa, list all species that changed by 10% or more: | NO, PAN, ALK4, ISOP, H2O2, ACET, MEK, MVK, MACR, PMN, PRPE, CH2O, N2O5, HNO4, MP, DMS, SO2, NH3, NIT, DST4, Br2, Br, BrO, BrNO2, BrNO3, ISOPN, MOBA, PROPNN, HAC, GLYC, MMN, RIP, IEPOX, MAP, NO2, NO3, HNO2 |
Comments on 500 hPa differences: |
|
In the ZONAL MEAN differences, list all species that changed by 10% or more: | NO, PAN, ALK4, ISOP, H2O2, ACET, MEK, MVK, MACR, PMN, PRPE, C3H8, CH2O, N2O5, MP, DMS, SO4s, NH3, NIT, NITs, Br2, Br, BrO, HOBr, BrNO2, BrNO3, MPN, ISOPN, MOBA, HAC, GLYC, MMN, RIP, IEPOX, MAP, NO3, HNO2, OH, HO2 |
Comments on ZONAL MEAN differences: |
|
In the EMISSION RATIO maps, list all species that changed by 10% or more: | None |
Comments on EMISSION RATIO differences: |
|
Additional or summary comments: |
|
Approval | |
Requires further investigation: | NO |
Approved by: | Daniel Jacob, Jingqiu Mao, Sebastian Eastham |
Date of approval: | 29 May 2014 |
--Bob Y. 14:20, 30 May 2014 (EDT)
v10-01b
Here is the assessment form for 1-month benchmark simulation v10-01b.
Description | |
---|---|
New features added into GEOS-Chem: | |
Developer name(s) and institution(s): |
|
Version, resolution, met fields used: | v10-01, GEOS-FP (47L), 4x5, July 2013 |
1-month benchmark finished on: | Wed Mar 5 15:06:00 EST 2014 |
Performance statistics: |
|
Compared to previous benchmark: | v10-01a |
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): |
Plots may be viewed at: | ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01b/ |
Metrics | |
Global mean OH (from log file): | 13.7339945052522 x 105 molec/cm3 |
Methyl chloroform lifetime: | 4.6706 years |
Did either of these change by more than 5%? | No. Both the mean OH and MCF lifetimes differ by < 0.01%. |
At the SURFACE, list all species that changed by 10% or more: | NO, ISOP, MVK, MACR, PMN, NIT, DST4, ISOPN, MOBA, RIP |
Comments on SURFACE differences: |
|
At 500 hPa, list all species that changed by 10% or more: | NO, ISOP, NH3, NIT, DST4, ISOPN, MOBA, RIP |
Comments on 500 hPa differences: |
|
In the ZONAL MEAN differences, list all species that changed by 10% or more: | ALK4, ISOP, C3H8, SO4s, NH3, NIT, GLYC |
Comments on ZONAL MEAN differences: |
|
In the EMISSION RATIO maps, list all species that changed by 10% or more: | None |
Comments on EMISSION RATIO differences: | |
Additional or summary comments: |
|
Approval | |
Requires further investigation: | No |
Approved by: | Jenny Fisher, Fabien Paulot |
Date of approval: | 06 Mar 2014 |
--Melissa Sulprizio 11:34, 6 March 2014 (EST)
v10-01a
Here is the assessment form for 1-month benchmark simulation v10-01a.
Description | |
---|---|
New features added into GEOS-Chem: | |
Developer name(s) and institution(s): |
|
Version, resolution, met fields used: | v10-01, GEOS-FP (47L), 4x5, July 2013 |
1-month benchmark finished on: | Mon Feb 3 15:05:32 EST 2014 |
Performance statistics: |
|
Compared to previous benchmark: | v9-02r w/ GEOS-FP meteorology |
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): |
Plots may be viewed at: | ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v10-01/v10-01a/ |
Metrics | |
Global mean OH (from log file): | 13.7338316128900 x 105 molec/cm3 |
Methyl chloroform lifetime: | 4.6707 years |
Did either of these change by more than 5%? | No. The mean OH differs by -0.02%, and the MCF lifetimes differ by 0.07%. |
At the SURFACE, list all species that changed by 10% or more: | NO, O3, PAN, ISOP, HNO3, H2O2, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, R4N2, PRPE, N2O5, DMS, NH3, NH4, NIT, OCPI, DST4, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPN, MOBA, PROPNN, HAC, GLYC, MMN, RIP, IEPOX, MAP, NO3, OH |
Comments on SURFACE differences: |
|
At 500 hPa, list all species that changed by 10% or more: | NO, ISOP, MVK, MACR, PMN, PRPE, N2O5, DMS, NH3, NIT, DST4, Br2, ISOPN, MOBA, HAC, GLYC, MMN, RIP, IEPOX, NO3 |
Comments on 500 hPa differences: |
|
In the ZONAL MEAN differences, list all species that changed by 10% or more: | NO, ALK4, ISOP, MVK, MACR, PMN, PRPE, C3H8, N2O5, NH3, NIT, NITs, DST4, Br2, ISOPN, MOBA, HAC, GLYC, MMN, RIP, IEPOX |
Comments on ZONAL MEAN differences: |
|
In the EMISSION RATIO maps, list all species that changed by 10% or more: | ISOP, ACET, OC, PRPE, CO from monoterpenes |
Comments on EMISSION RATIO differences: |
|
Additional or summary comments: | We still need to determine what caused the changes in the MODIS LAI input files. As per our earlier discussion, we have put in an error trap in drydep_mod to make sure that the changes are only made for simulations using GEOS-FP and the Olson 2001 land map. |
Approval | |
Requires further investigation: | No |
Approved by: | Patrick Kim |
Date of approval: | 5 Feb 2014 |
--Melissa Sulprizio 12:16, 3 February 2014 (EST)