Difference between revisions of "GEOS-Chem model development priorities"
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We also invite you to view our [https://trello.com/board/geos-chem-support-team/4fe36668fc79a1d3540ba80b GEOS-Chem Support Team project management board on Trello.com], which shows the current GCST workflow. | We also invite you to view our [https://trello.com/board/geos-chem-support-team/4fe36668fc79a1d3540ba80b GEOS-Chem Support Team project management board on Trello.com], which shows the current GCST workflow. | ||
− | == List of priorities as of | + | == List of priorities as of Oct 2016 == |
Items "Awaiting release" will be part of the next version release of GEOS-Chem and are actively being incorporated into the standard model and benchmarked. Other items are in different stages of readiness and will be included in future versions of the model. | Items "Awaiting release" will be part of the next version release of GEOS-Chem and are actively being incorporated into the standard model and benchmarked. Other items are in different stages of readiness and will be included in future versions of the model. | ||
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*Included in [[GEOS-Chem v11-01#v11-01a|v11-01a]] (approved 07 Jul 2015) | *Included in [[GEOS-Chem v11-01#v11-01a|v11-01a]] (approved 07 Jul 2015) | ||
− | * | + | *A [[GEOS-Chem_v11-01#Incorrect_incorporation_of_moisture_in_GEOS-Chem_air_quantities|fix to remove the moisture signature]] was included in [[GEOS-Chem v11-01#v11-01h|v11-01h]] (approved 11 Oct 2015) |
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*Introduced in [[GEOS-Chem v11-01#v11-01d|v11-01d]] (approved 12 Dec 2015) | *Introduced in [[GEOS-Chem v11-01#v11-01d|v11-01d]] (approved 12 Dec 2015) | ||
*Modified in [[GEOS-Chem v11-01#v11-01e|v11-01e]] (approved 04 Jan 2016) | *Modified in [[GEOS-Chem v11-01#v11-01e|v11-01e]] (approved 04 Jan 2016) | ||
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+ | |[[FlexChem]] | ||
+ | |Mike Long (Harvard), [[GCST]] | ||
+ | | | ||
+ | *Included in [[GEOS-Chem v11-01#v11-01g|v11-01g]] (approved 28 Sep 2016) | ||
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|[[GEOS-Chem Support Team]] | |[[GEOS-Chem Support Team]] | ||
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− | *Initial modifications for running with MERRA-2 were included in [[GEOS-Chem v11-01#v11-01c|v11-01c]] | + | *Initial modifications for running with MERRA-2 were included in [[GEOS-Chem v11-01#v11-01c|v11-01c]] (approved 14 Sept 2015) |
− | *Full integration of MERRA-2 in GEOS-Chem (i.e. making "full-chemistry" simulations compatible with MERRA-2) | + | *Full integration of MERRA-2 in GEOS-Chem (i.e. making "full-chemistry" simulations compatible with MERRA-2) was implemented in [[GEOS-Chem v11-01#v11-01f|v11-01f]] (approved 16 Apr 2016) |
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*This will be an ongoing process that will occur simultaneously as the above science updates are brought into GEOS-Chem. | *This will be an ongoing process that will occur simultaneously as the above science updates are brought into GEOS-Chem. | ||
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− | --[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) | + | --[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 17:56, 18 October 2016 (UTC) |
=== Ready to go in === | === Ready to go in === | ||
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!width="400px"|Status | !width="400px"|Status | ||
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− | | | + | |[[New_isoprene_scheme#Set_ACTA_and_HCOOH_to_active_in_globchem.dat|Set ACTA and HCOOH to active]] |
− | | | + | |Katie Travis (Harvard) |
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− | + | *Delivered to GCST | |
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− | *Delivered to | + | |
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|Tomás Sherwen (York)<br>Johan Schmidt (Harvard)<br>[[Chemistry Issues|Oxidants and Chemistry WG]] | |Tomás Sherwen (York)<br>Johan Schmidt (Harvard)<br>[[Chemistry Issues|Oxidants and Chemistry WG]] | ||
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|Barron Henderson (U. Florida)<br>Mat Evans (U. York)<br>[[Chemistry Issues|Oxidants and Chemistry WG]] | |Barron Henderson (U. Florida)<br>Mat Evans (U. York)<br>[[Chemistry Issues|Oxidants and Chemistry WG]] | ||
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+ | |[[GEOS-Chem_Output_Files#NetCDF_File_Format|NetCDF Output Phase 3a: Output diagnostics in NetCDF format]] | ||
+ | |Structural | ||
+ | |[[GCST]] | ||
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+ | |[[GEOS-Chem_Output_Files#NetCDF_File_Format|NetCDF Output Phase 3b: Updates to eliminate differences between single and multi-segmented GEOS-Chem runs]] | ||
+ | |Bug fix | ||
+ | |[[GCST]], Christoph Keller | ||
+ | | | ||
+ | |||
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+ | |[[PAN|PAN updates]] | ||
+ | |Emily Fischer (CSU) | ||
+ | | | ||
+ | *Delivered to GCST (May 2013) | ||
+ | |||
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|[[NOx-Ox-HC-aerosol#Monthly mean surface distributions|Monthly mean surface methane distributions]] | |[[NOx-Ox-HC-aerosol#Monthly mean surface distributions|Monthly mean surface methane distributions]] | ||
|Lee Murray (NASA GISS/LDEO) | |Lee Murray (NASA GISS/LDEO) | ||
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|Fabien Paulot (NOAA/GFDL) | |Fabien Paulot (NOAA/GFDL) | ||
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− | * | + | *Data files delivered to GCST (Jan 2016) |
− | * | + | *Needs to be implemented via HEMCO |
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*Delivered to [[GEOS-Chem Support Team|GCST]] (Jan 2016) | *Delivered to [[GEOS-Chem Support Team|GCST]] (Jan 2016) | ||
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− | | | + | |Species Database Phase 3: |
− | | | + | *Harmonizing Henry's Law coefficients across wet and dry deposition |
+ | |Science | ||
+ | |[[GCST]] | ||
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− | * | + | |
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+ | |[[GEOS-Chem_tracer_units|Uniformity of units]] | ||
+ | |Science | ||
+ | |Lizzie Lundgren ([[GCST]]) | ||
+ | | | ||
+ | *Phase 2 (unit uniformity throughout chemistry) to be implemented after Flexchem | ||
+ | *Phase 3 (unit uniformity in some specialty simulations) will be implemented in pieces with input from 3rd party developers | ||
+ | *Phase 4 (removal of area and area-dependent State_Met variables) will be ongoing | ||
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|Becky Alexander (UW) | |Becky Alexander (UW) | ||
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*'''''Becky Alexander wrote on 14 Sep 2015:''''' | *'''''Becky Alexander wrote on 14 Sep 2015:''''' | ||
:I've incorporated both the metal catalyzed chemistry and the sulfate isotopes into v10. The metal catalyzed chemistry is much slower than it is when run in v8 and v9. I still have not yet figured out why. I'm not comfortable adding this into the standard model until I figure it out. The emissions are quite different in v10 because of HEMCO, and metal catalyzed chemistry is very sensitive to emissions of primary anthropogenic sulfate, so that's my current hypothesis for the difference. I will probably not get back to debugging this until late October. | :I've incorporated both the metal catalyzed chemistry and the sulfate isotopes into v10. The metal catalyzed chemistry is much slower than it is when run in v8 and v9. I still have not yet figured out why. I'm not comfortable adding this into the standard model until I figure it out. The emissions are quite different in v10 because of HEMCO, and metal catalyzed chemistry is very sensitive to emissions of primary anthropogenic sulfate, so that's my current hypothesis for the difference. I will probably not get back to debugging this until late October. | ||
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+ | |[[Wet_deposition#Update_SO2_scavenging_in_convective_updrafts_for_consistency|Temporary fix to remove SO2 scavenging in convective updrafts]] | ||
+ | |Duncan Fairlie (NASA/LARC) | ||
+ | | | ||
+ | *Delivered to [[GEOS-Chem Support Team|GCST]] (Nov 2015) | ||
+ | *'''''Duncan Fairlie wrote on 03 Mar 2016:''''' | ||
+ | :I don't think my fix for this issue is ready for prime time. I get chimneys of essentially unscavenged SO2 extending into the UTLS during Asian monsoon, leading to too much sulfate aloft. I think replacing the instantaneous titration of H2O2 in the standard code with the correct oxidation of SO2 by H2O2 (and O3?) is necessary. | ||
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+ | |[[Wet_deposition#Update_SO2_scavenging_in_convective_updrafts_for_consistency|Update SO2 scavenging in convective updrafts for consistency]] | ||
+ | |Science | ||
+ | |Duncan Fairlie (NASA/LARC) | ||
+ | | | ||
+ | |||
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+ | |Sub-grid non-linear chemistry of NOx-O3 system related to lightning NOx emissions | ||
+ | |Alicia Gressent (MIT) | ||
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|Eloise Marais (Harvard) | |Eloise Marais (Harvard) | ||
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*Delivered to GCST (Jul 2016) | *Delivered to GCST (Jul 2016) | ||
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|Aerosol Working Group Chairs | |Aerosol Working Group Chairs | ||
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− | --[[User: | + | --[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 17:56, 18 October 2016 (UTC) |
=== Almost there (< 6 months) === | === Almost there (< 6 months) === |
Revision as of 17:56, 18 October 2016
On this page we list the current priorities for GEOS-Chem development. This list was compiled by the user Working Groups at the last International GEOS-Chem Meeting (IGC7) in May 2015 and has been continuously updated since based on code readiness and input from the Working Groups and the Steering Committee.
We also invite you to view our GEOS-Chem Support Team project management board on Trello.com, which shows the current GCST workflow.
Contents
List of priorities as of Oct 2016
Items "Awaiting release" will be part of the next version release of GEOS-Chem and are actively being incorporated into the standard model and benchmarked. Other items are in different stages of readiness and will be included in future versions of the model.
Awaiting release
Item | Author(s) | Status |
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Science updates | ||
Correction for wet/dry pressure | Lizzie Lundgren (Harvard) Meemong Lee (JPL) |
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Update DMS climatology to Lana | Tom Breider (Harvard) |
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Impaction scavenging for hydrophobic BC | Qiaoqiao Wang (Max Planck Institute) |
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Homogeneous IN removal | Qiaoqiao Wang (Max Planck Institute) |
|
Online emission of marine primary organic aerosol (POA) | Brett Gantt (NCSU) Matthew Johnson (NASA Ames) |
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Density of OA update | Melanie Hammer (Dalhousie) Eloïse Marais (Harvard) |
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Addition of BrC UV absorption to address impacts on OH | Melanie Hammer (Dalhousie) |
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Acid uptake on dust aerosols | T. Duncan Fairlie (NASA/LARC) |
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Improved dust size distribution scheme | Li Zhang (Colorado U.) Daven Henze (Colorado U.) |
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Updates to PAH code | Carey Friedman (MIT) |
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Hg Ocean MLD bug fixes | Amanda Giang (MIT) |
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Hg Ocean rate coefficients (as an option, not default) | Shaojie Song (MIT) |
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Hg Arctic process updates | Jenny Fisher (Wollongong) |
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Hg emission updates (NEI2011, NPRI2011, UNEP2010 with adjustments for in-plume reduction and emission controls) | Yanxu Zhang (Harvard) Amanda Giang (MIT) |
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CO2 direct effect on isoprene emissions | Amos Tai (CUHK) |
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Criegee intermediates | Dylan Millet (U. Minnesota) Eloïse Marais (Harvard) |
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Developing a common data structure to contain Henry's law constants and other relevant parameters for each species |
GEOS-Chem Support Team |
|
FlexChem | Mike Long (Harvard), GCST |
|
Structural/programming updates | ||
GEOS-Chem timers | Matt Yannetti (GCST) |
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Adding support for MERRA-2 meteorology | GEOS-Chem Support Team | |
Structural updates for GEOS-Chem HP | GEOS-Chem Support Team NASA/GMAO |
|
--Melissa Sulprizio (talk) 17:56, 18 October 2016 (UTC)
Ready to go in
Item | Author(s) | Status | |
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Set ACTA and HCOOH to active | Katie Travis (Harvard) |
| |
Halogen chemistry updates | Tomás Sherwen (York) Johan Schmidt (Harvard) Oxidants and Chemistry WG |
||
Updating chemistry rate constants based on JPL Publication 15-10 | Barron Henderson (U. Florida) Mat Evans (U. York) Oxidants and Chemistry WG |
||
NetCDF Output Phase 3a: Output diagnostics in NetCDF format | Structural | GCST | |
NetCDF Output Phase 3b: Updates to eliminate differences between single and multi-segmented GEOS-Chem runs | Bug fix | GCST, Christoph Keller | |
PAN updates | Emily Fischer (CSU) |
| |
Monthly mean surface methane distributions | Lee Murray (NASA GISS/LDEO) | ||
Ocean ammonia emission inventory | Fabien Paulot (NOAA/GFDL) |
| |
Update density of BC to 1.8 and add absorption enhancement factor in input.geos | Xuan Wang (MIT) |
| |
Species Database Phase 3:
|
Science | GCST | |
Uniformity of units | Science | Lizzie Lundgren (GCST) |
|
Metal catalyzed oxidation of SO2 (as a switch) | Becky Alexander (UW) |
| |
Temporary fix to remove SO2 scavenging in convective updrafts | Duncan Fairlie (NASA/LARC) |
| |
Update SO2 scavenging in convective updrafts for consistency | Science | Duncan Fairlie (NASA/LARC) | |
Sub-grid non-linear chemistry of NOx-O3 system related to lightning NOx emissions | Alicia Gressent (MIT) | ||
Fix to direct/diffuse radiation | Katie Travis (Harvard) | ||
Fix for NO3 + ISOP product | Katie Travis (Harvard) | ||
Update OH + NO2 rate | Barron Henderson (UF) | ||
Tagged sulfate and nitrate simulation | Becky Alexander (UW) | ||
Lightning update based on Travis et al. (submitted) and Zhang et al. (2014, ACP) | Katie Travis (Harvard) | ||
Add aqueous isoprene uptake to SOA scheme | Eloise Marais (Harvard) |
| |
Enhance default GEOS-Chem simple SOA | Aerosol Working Group Chairs |
|
--Melissa Sulprizio (talk) 17:56, 18 October 2016 (UTC)
Almost there (< 6 months)
Item | Author(s) | Status |
---|---|---|
Update MODIS LAI fields through 2015 | Barron Henderson (UF) | |
Python GEOS-Chem output processing and visualization package | Benoît Bovy (U. Liège-Belgium) |
|
Benchmark of stratosphere simulation | Dylan Jones (U. Toronto) | |
Benchmark for nested NA model | Jun Wang (UNL) | |
High-resolution regional emissions (to be implemented via HEMCO) | Lin Zhang (PKU) Yuxuan Wang (Texas A&M) |
|
Updates to isoprene chemistry, includes:
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Jenny Fisher (U. Wollongong) Eloïse Marais (Harvard) Kelvin Bates (Caltech) Katie Travis (Harvard) |
|
3D chemical source for CO2 and CO; OH for tagged CO and CH4 simulations | Dylan Jones (U. Toronto) | |
Hg code updates (emissions, chemistry, ocean, land) | Hg and POPs Working Group |
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Lightning NOx plume chemistry | Alicia Gressent (U. Paul Sabatier) | |
Nested CO2, CH4, Hg, TOMAS, adjoint, etc. | Nested Model Working Group | |
Updated nighttime isoprene chemistry | Rebecca Schwantes (Caltech) | |
Updated organic deposition | Katie Travis (Harvard) Jenny Fisher (U. Wollongong) |
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EPA-derived BC/OA emissions over US (1990-2012) | David Ridley (MIT) | |
Observation operators for CO2 OCO-2 in GEOS-Chem Adjoint | Kevin Bowman (JPL) Dylan Jones (U. Toronto) |
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Observation operators for CH4 GOSAT, SCIAMACHY in GEOS-Chem Adjoint | Dylan Jones (U. Toronto) Alex Turner (Harvard) |
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Remove dependence of species drydep on HNO3 drydep | Katie Travis (Harvard) Jenny Fisher (U. Wollongong) |
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Arctic Hg cycling | Jenny Fisher (U. Wollongong) | |
MOSAIC implementation | Sebastian Eastham (MIT) | |
Updated documentation on setting up new nested domains | Lin Zhang (PKU) Yuxuan Wang (Texas A&M) |
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Nested model publication wiki page | Jun Wang (UNL) | |
Past and future fire emissions under RCPs | Loretta Mickley (Harvard) Yuhang Wang (GIT) Shiliang Wu (MT) |
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QFED fire emissions (up to 2014) | Christoph Keller (Harvard) Katie Travis (Harvard) |
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Uniformity of units | GEOS-Chem Support Team |
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Update SO2 scavenging in convective updrafts for consistency | Duncan Fairlie (NASA/LARC) | |
Sedimentation of stratospheric aerosols | Sebastian Eastham (MIT) |
--Bob Yantosca (talk) 20:50, 17 February 2016 (UTC)
Over the horizon (6-12 months)
Item | Author(s) | Status |
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A snow NOx source from deep snowpack | Maria Zatko (UW) Becky Alexander (UW) |
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Dust emissions at nested-grid resolution | Yuxuan Wang (Texas A&M) Jun Wang (UNL) |
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Archive meteorological fields with higher resolution (for RCPs) | Lee Murray (NASA GISS/LDEO) | |
Land cover module in GEOS-Chem | Jeffrey Geddes (MIT) Michael Long (Harvard) |
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Improved lightning emission scheme | Lee Murray (NASA GISS/LDEO) | |
Archive high resolution wind fields for sea salt | GEOS-Chem Support Team | |
PCB simulation | Carey Friedman (MIT) Helen Amos (Harvard) |
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VBS SOA option | Rokjin Park (SNU) | |
Kz eddy mixing scheme | Karen Yu (Harvard) | |
Update HCN simulation, implement in standard model via Flexchem | Jenny Fisher (U. Wollongong) | |
Merge standard simulation with specialty simulations for OVOC, acids, aromatics, dicarbonyls, terpenes | Dylan Millet (UMN) Xin Chen (UMN) |
|
Cl chemistry updates | Lyatt Jaeglé (UW) | |
Automate redistribution of NOx in HEMCO | Lee Murray (NASA GISS/LDEO) | |
Injection height for fire emissions | Emily Fischer (CSU) | |
Option for daily OH, etc. for Hg simulation | Noelle Selin (MIT) | |
Surface ocean Hg boundary conditions from MITgcm | Hannah Horowitz (Harvard) | |
NetCDF output: Flexible diagnostic package and tracer restart file | GEOS-Chem Support Team |
--Melissa Sulprizio (talk) 16:56, 9 June 2015 (UTC)
Longer term (12-24 months)
Item | Author(s) | Status |
---|---|---|
Global GEOS-FP native-resolution met fields to enable flexible nested domains | Jintai Lin (PKU) Lin Zhang (PKU) GEOS-Chem Support Team |
|
DMS oxidation scheme updating | Tom Breider (Harvard) Becky Alexander (U. Washington) Oxidants and Chemistry Working Group |
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Dynamics of stomatal conductance in dry deposition | Amos Tai (CUHK) | |
New dry deposition module (Zhang et al., 2013) | Jintai Lin (PKU) | |
Bi-directional NH3 emissions | Juliet Zhu (CSU) Lin Zhang (PKU) |
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Arsenic simulation | Shiliang Wu (MT) | |
Hg benchmark updates for atmosphere and ocean | Hannah Horowitz (Harvard) Viral Shah (UW) Shaojie Song (MIT) |
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Emission scheme of dust: subgrid wind variation to remove resolution dependence and better interannual variability | David Ridley (MIT) | |
Ozone damage to vegetation | Amos Tai (CUHK) | |
Implement biogenic emissions of ethane, propane | Zitely Tzompa (CSU) | |
Global evaluation of using LWC and ICW variables from met fields | UCLA group Hongyu Liu (NIA/NASA LARC) Betty Croft (Dalhousie) |
|
Joint CO/CO2/CH4 forward model simulation | Nicholas Deutscher (U. Wollongong) | |
Subgrid scale precipitation variability | Harvard group | |
Dry deposition: Update the ozone dry deposition scheme | Murphy group (UofT) | |
Country-based weekend/weekday variability for EDGAR v4.2 | Lee Murray (NASA GISS/LDEO) Christoph Keller (Harvard) |
|
Sea salt emission from sea ice | Jiayue Huang (UW) | |
Resolution-independent lightning NOx scaling | Lee Murray (NASA GISS/LDEO) | |
Historical Hg emissions (1850-present) | Hannah Horowitz (Harvard) | |
Nested-grid model with GEOS-FP at 1/2° x 5/8° resolution | Nested Model Working Group | |
TNO emissions over Europe (7km) | Greece team | |
Re-evaluation of SST dependence of sea salt emissions | Jiayue Huang (UW) |
--Melissa Sulprizio 14:08, 11 May 2015 (EDT)