Difference between revisions of "List of diagnostics archived to bpch format"

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(→‎ND42: SOA diagnostics)
(→‎ND03: Mercury emissions and P/L)
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|1  ||(I,J)  ||Anthropogenic Hg0 emission            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
 
|1  ||(I,J)  ||Anthropogenic Hg0 emission            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
 
|-valign="top"  
 
|-valign="top"  
−
|2  ||(I,J)  ||Total mass of oceanic Hg0            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|2  ||(I,J)  ||Total mass of oceanic Hg0            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|3  ||(I,J)  ||Oceanic emission of Hg0              ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|3  ||(I,J)  ||Oceanic emission of Hg0              ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|4  ||(I,J)  ||Land reemission of Hg0                ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|4  ||(I,J)  ||Land reemission of Hg0                ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|5  ||(I,J)  ||Land natural emission of Hg0          ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|5  ||(I,J)  ||Land natural emission of Hg0          ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|6  ||(I,J)  ||Anthropogenic Hg2 emission            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|6  ||(I,J)  ||Anthropogenic Hg2 emission            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|7  ||(I,J)  ||Total mass of oceanic Hg2            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|7  ||(I,J)  ||Total mass of oceanic Hg2            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|8  ||(I,J)  ||Mass of Hg2 sunk in the ocean        ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|8  ||(I,J)  ||Mass of Hg2 sunk in the ocean        ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|9  ||(I,J)  ||Anthropogenic HgP emission            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|9  ||(I,J)  ||Anthropogenic HgP emission            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|10 ||(I,J)  ||Total oceanic mercury                ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|10 ||(I,J)  ||Total oceanic mercury                ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|11 ||(I,J)  ||Total mass of oceanic HgP            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|11 ||(I,J)  ||Total mass of oceanic HgP            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|12 ||(I,J)  ||Mass of organic carbon sunk in ocean  ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|12 ||(I,J)  ||Mass of organic carbon sunk in ocean  ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|13 ||(I,J)  ||Emissions from biomass burning        ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|13 ||(I,J)  ||Emissions from biomass burning        ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|14 ||(I,J)  ||Emissions from vegetation            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|14 ||(I,J)  ||Emissions from vegetation            ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|15 ||(I,J)  ||Emissions from soils                  ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|15 ||(I,J)  ||Emissions from soils                  ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|16 ||(I,J)  ||Flux-up Hg0 volat from ocean          ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|16 ||(I,J)  ||Flux-up Hg0 volat from ocean          ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|17 ||(I,J)  ||Flux-down Hg0 dry dep to ocean        ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|17 ||(I,J)  ||Flux-down Hg0 dry dep to ocean        ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|18 ||(I,J)  ||Snow emission of Hg                  ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|18 ||(I,J)  ||Snow emission of Hg                  ||[kg]  ||HG-SRCE ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|19 ||(I,J,L) ||Production of Hg2 from Hg0            ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|19 ||(I,J,L) ||Production of Hg2 from Hg0            ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|20 ||(I,J,L) ||Production of Hg2 from rxn w/ OH      ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|20 ||(I,J,L) ||Production of Hg2 from rxn w/ OH      ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|21 ||(I,J,L) ||Production of Hg2 from rxn w/ O3      ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|21 ||(I,J,L) ||Production of Hg2 from rxn w/ O3      ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|22 ||(I,J,L) ||Loss of Hg2 from rxn w/ sea salt      ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|22 ||(I,J,L) ||Loss of Hg2 from rxn w/ sea salt      ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|23 ||(I,J,L) ||Loss rate of Hg2 from rxn w/ sea salt ||[s-1] ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|23 ||(I,J,L) ||Loss rate of Hg2 from rxn w/ sea salt ||[s-1] ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|24 ||(I,J,L) ||Production of Hg2 from Br            ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|24 ||(I,J,L) ||Production of Hg2 from Br            ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|25 ||(I,J,L) ||Br concentration                      ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|25 ||(I,J,L) ||Br concentration                      ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|26 ||(I,J,L) ||BrO concentration                    ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|26 ||(I,J,L) ||BrO concentration                    ||[kg]  ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|27 ||(I,J,L) ||Particulate bound mercury            ||[pptv] ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|27 ||(I,J,L) ||Particulate bound mercury            ||[pptv] ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|28 ||(I,J,L) ||Reactive gaseous mercury              ||[pptv] ||PL-HG2-$ ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|28 ||(I,J,L) ||Reactive gaseous mercury              ||[pptv] ||PL-HG2-$ ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|29 ||(I,J,L) ||Oceanic Hg0                          ||[kg]  ||OCEAN-HG ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|29 ||(I,J,L) ||Oceanic Hg0                          ||[kg]  ||OCEAN-HG ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|30 ||(I,J,L) ||Oceanic Hg2                          ||[kg]  ||OCEAN-HG ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|30 ||(I,J,L) ||Oceanic Hg2                          ||[kg]  ||OCEAN-HG ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|31 ||(I,J,L) ||Oceanic HgP                          ||[kg]  ||OCEAN-HG ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|31 ||(I,J,L) ||Oceanic HgP                          ||[kg]  ||OCEAN-HG ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|32 ||(I,J,L) ||Total Hg in snowpack                  ||[kg]  ||SNOW-HG ||Hg<br>tagHg || ||NetCDF will be available in v11-03
+
|32 ||(I,J,L) ||Total Hg in snowpack                  ||[kg]  ||SNOW-HG ||Hg<br>tagHg || ||" "
 
|-valign="top"  
 
|-valign="top"  
−
|33 ||        ||+ Tagged tracers                      ||      ||  ||tagHg || ||NetCDF will be available in v11-03
+
|33 ||        ||+ Tagged tracers                      ||      ||  ||tagHg || ||" "
 
|}
 
|}
  

Revision as of 16:03, 5 February 2018

On this page we list the various diagnostic quantities that you can archive with GEOS-Chem. These diagnostic quantities are archived to "binary punch" (aka bpch) format.

NOTE: We are phasing out binary punch format output, and will replace it with netCDF output. This will probably happen in GEOS-Chem v11-03.

Contents

Overview

The tables below list the following parameters for each diagnostic that is archived to bpch format:

NDxx # The index for each slot of the given "NDxx" bpch diaggnostic.
Dims Diagnostics are usually 2-D or 3-D, with I,J,L for longitude, latitude and level indices.

N as a third or fourth dimension refers to the number of species that a diagnostic can carry.

Description A short overview of the given diagnostic.
Units The physical units of the given diagnostic quantity
Category The 8-character name used by GAMAP to reference a particular diagnostic field. Information about how to set the different flags in the input.geos file can be found in the Diagnostic Menu section of our GEOS-Chem Input Files wiki page.
Simulations A list of simulations for which this particular diagnostic is valid.

NOTE: fullchem simulations are those that use the full-chemistry mechanism (with the FlexChem/KPP solver). These are:

  • benchmark
  • standard
  • tropchem
  • complexSOA
  • complesSOA_SVPOA
  • marinePOA
  • aciduptake
netCDF equivalent The name under which the same diagnostic is available as netCDF output (in GEOS-Chem v11-02 and higher). See the List of diagnostics archived to netCDF format wiki page for more information.

You can specify which diagnostic quantities you want to archive by modifying the various menus of the input.geos file, which is contained in your the GEOS-Chem run directory. The relevant menus of input.geos are:

ND01: Rn-Pb-Be sources

ND01 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) 222Rn emissions [kg/s] RN-SRCE Rn-Pb-Be EMIS_Rn_SOIL Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
2 (I,J,L) 210Pb emissions [kg/s] RN-SRCE Rn-Pb-Be PbfromRadDecay
3 (I,J,L) 7Be emissions [kg/s] RN-SRCE Rn-Pb-Be EMIS_Be_COSMIC Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.

ND02: Rn-Pb-Be decay

ND02 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) 222Rn loss [kg/s] RN-DECAY Rn-Pb-Be RadDecay_Rn
2 (I,J,L) 210Pb loss [kg/s] RN-DECAY Rn-Pb-Be RadDecay_Pb
3 (I,J,L) 7Be loss [kg/s] RN-DECAY Rn-Pb-Be RadDecay_Be7

ND03: Mercury emissions and P/L

ND03 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Anthropogenic Hg0 emission [kg] HG-SRCE Hg
tagHg 		NetCDF will be available in v11-03
2 (I,J) Total mass of oceanic Hg0 [kg] HG-SRCE Hg
tagHg 		" "
3 (I,J) Oceanic emission of Hg0 [kg] HG-SRCE Hg
tagHg 		" "
4 (I,J) Land reemission of Hg0 [kg] HG-SRCE Hg
tagHg 		" "
5 (I,J) Land natural emission of Hg0 [kg] HG-SRCE Hg
tagHg 		" "
6 (I,J) Anthropogenic Hg2 emission [kg] HG-SRCE Hg
tagHg 		" "
7 (I,J) Total mass of oceanic Hg2 [kg] HG-SRCE Hg
tagHg 		" "
8 (I,J) Mass of Hg2 sunk in the ocean [kg] HG-SRCE Hg
tagHg 		" "
9 (I,J) Anthropogenic HgP emission [kg] HG-SRCE Hg
tagHg 		" "
10 (I,J) Total oceanic mercury [kg] HG-SRCE Hg
tagHg 		" "
11 (I,J) Total mass of oceanic HgP [kg] HG-SRCE Hg
tagHg 		" "
12 (I,J) Mass of organic carbon sunk in ocean [kg] HG-SRCE Hg
tagHg 		" "
13 (I,J) Emissions from biomass burning [kg] HG-SRCE Hg
tagHg 		" "
14 (I,J) Emissions from vegetation [kg] HG-SRCE Hg
tagHg 		" "
15 (I,J) Emissions from soils [kg] HG-SRCE Hg
tagHg 		" "
16 (I,J) Flux-up Hg0 volat from ocean [kg] HG-SRCE Hg
tagHg 		" "
17 (I,J) Flux-down Hg0 dry dep to ocean [kg] HG-SRCE Hg
tagHg 		" "
18 (I,J) Snow emission of Hg [kg] HG-SRCE Hg
tagHg 		" "
19 (I,J,L) Production of Hg2 from Hg0 [kg] PL-HG2-$ Hg
tagHg 		" "
20 (I,J,L) Production of Hg2 from rxn w/ OH [kg] PL-HG2-$ Hg
tagHg 		" "
21 (I,J,L) Production of Hg2 from rxn w/ O3 [kg] PL-HG2-$ Hg
tagHg 		" "
22 (I,J,L) Loss of Hg2 from rxn w/ sea salt [kg] PL-HG2-$ Hg
tagHg 		" "
23 (I,J,L) Loss rate of Hg2 from rxn w/ sea salt [s-1] PL-HG2-$ Hg
tagHg 		" "
24 (I,J,L) Production of Hg2 from Br [kg] PL-HG2-$ Hg
tagHg 		" "
25 (I,J,L) Br concentration [kg] PL-HG2-$ Hg
tagHg 		" "
26 (I,J,L) BrO concentration [kg] PL-HG2-$ Hg
tagHg 		" "
27 (I,J,L) Particulate bound mercury [pptv] PL-HG2-$ Hg
tagHg 		" "
28 (I,J,L) Reactive gaseous mercury [pptv] PL-HG2-$ Hg
tagHg 		" "
29 (I,J,L) Oceanic Hg0 [kg] OCEAN-HG Hg
tagHg 		" "
30 (I,J,L) Oceanic Hg2 [kg] OCEAN-HG Hg
tagHg 		" "
31 (I,J,L) Oceanic HgP [kg] OCEAN-HG Hg
tagHg 		" "
32 (I,J,L) Total Hg in snowpack [kg] SNOW-HG Hg
tagHg 		" "
33 + Tagged tracers tagHg " "

ND04: CO2 sources

ND04 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) CO2 fossil fuel emiss [atoms C/cm2/s] CO2-SRCE CO2 NetCDF to be added in v11-03
2 (I,J) CO2 ocean emissions [atoms C/cm2/s] CO2-SRCE CO2 " "
3 (I,J) CO2 balanced biosphere [atoms C/cm2/s] CO2-SRCE CO2 " "
4 (I,J) CO2 biomass burning emiss [atoms C/cm2/s] CO2-SRCE CO2 " "
5 (I,J) CO2 biofuel emission [atoms C/cm2/s] CO2-SRCE CO2 " "
6 (I,J) CO2 net terrestrial exchange [atoms C/cm2/s] CO2-SRCE CO2 " "
7 (I,J) CO2 ship emissions [atoms C/cm2/s] CO2-SRCE CO2 " "
8 (I,J,L) CO2 aircraft emissions [atoms C/cm2/s] CO2-SRCE CO2 " "
9 (I,J,L) CO2 chemical source [atoms C/cm2/s] CO2-SRCE CO2 " "
10 (I,J) CO2 chemical source surface correction [atoms C/cm2/s] CO2-SRCE CO2 " "

ND05: P/L for sulfate aerosols

ND05 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) P(SO2) from DMS + OH
 [kg S] PL-SUL=$ aerosol ProdSO2fromDMSandOH
2 (I,J,L) P(SO2) from DMS + NO3 [kg S] PL-SUL=$ aerosol ProdSO2fromDMSandNO3
3 (I,J,L) Total P(SO2) from DMS [kg S] PL-SUL=$ aerosol ProdSO2fromDMS
4 (I,J,L) P(MSA) from DMS [kg S] PL-SUL=$ aerosol ProdMSAfromDMS
5 (I,J,L) P(SO4) from the gas phase [kg S] PL-SUL=$ aerosol ProdSO4fromGasPhase
6 (I,J,L) P(SO4) from aqueous oxidation of H2O2 in clouds [kg S] PL-SUL=$ aerosol
fullchem 		ProdSO4fromH2O2inCloud
7 (I,J,L) P(SO4) from aqueous oxidation of O3 in clouds [kg S] PL-SUL=$ aerosol
fullchem 		ProdSO4fromO3inCloud
8 (I,J,L) P(SO4) from aqueous oxidation of O2 in clouds (metal catalyzed) [kg S] PL-SUL=$ aerosol
fullchem 		ProdSO4fromO2inCloudMetal New in v11-02
9 (I,J,L) P(SO4) from O3 on sea salt aerosols [kg S] PL-SUL=$ aerosol
fullchem 		ProdSO4fromO3inSeaSAlt
10 (I,J,L) L(OH) by DMS [kg OH] PL-SUL=$ aerosol Removed in v11-02 NOTE: This diagnostic is zero everywhere, because a fixed OH field is read from disk for aerosol-only simulations.
11 (I,J,L) L(NO3) by DMS [kg NO3] PL-SUL=$ aerosol Removed in v11-02 NOTE: This diagnostic is zero everywhere, because a fixed NO3 field is read from disk for aerosol-only simulations
12 (I,J,L) P(SO4) from oxidation on dust aerosols [kg S] PL-SUL=$ aciduptake ProdSO4fromOxidationOnDust
13 (I,J,L) P(NIT) from HNO3 uptake on dust [kg N] PL-SUL=$ aciduptake ProdNITfromHNO3UptakeOnDust
14 (I,J,L) P(SO4) from uptake of H2SO4(g) [kg N] PL-SUL=$ aciduptake ProdSO4fromUptakeOfH2SO4g
15 (I,J,L) L(HNO3) on sea salt aerosols [kg N] PL-SUL=$ aerosol
fullchem 		LossHNO3onSeaSalt
16 (I,J,L) P(SO4) from aqueous oxidation with HOBr in clouds [kg S] PL-SUL=$ fullchem ProdSO4fromHOBrInCloud New in v11-02
17 (I,J,L) P(SO4) from by SRO3 [kg S] PL-SUL=$ aerosol
fullchem 		ProdSO4fromSRO3 New in v11-02
18 (I,J,L) P(SO4) from SRHOBr [kg S] PL-SUL=$ fullchem ProdSO4fromSRHOBr New in v11-02
19 (I,J,L) P(SO4) by O3s [kg S] PL-SUL=$ aerosol
fullchem 		ProdSO4fromO3s New in v11-02

ND06: Dust emissions

ND06 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) DST1 (Dust aerosol, Reff = 0.7 microns) [kg] DUSTSRCE all EMIS_DST1_NATU Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
2 (I,J) DST2 (Dust aerosol, Reff = 1.4 microns) [kg] DUSTSRCE all EMIS_DST2_NATU " "
3 (I,J) DST3 (Dust aerosol, Reff = 2.4 microns) [kg] DUSTSRCE all EMIS_DST3_NATU " "
4 (I,J) DST4 (Dust aerosol, Reff = 4.5 microns) [kg] DUSTSRCE all EMIS_DST4_NATU " "

ND07: BC and OC sources

ND07 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) BLACK CARBON from anthro sources [kg] BC-ANTH fullchem
aerosol
2 (I,J) BLACK CARBON from biomass burning [kg] BC-BIOB fullchem
aerosol
3 (I,J) BLACK CARBON from biofuels [kg] BC-BIOF fullchem
aerosol
4 (I,J,L) Hydrophilic BC from Hydrophobic BC [kg] PL-BC=$ fullchem
aerosol 		ProdBCPIfromBCPO
5 (I,J) ORGANIC CARBON from anthro sources [kg] OC-ANTH fullchem
aerosol
6 (I,J) ORGANIC CARBON from biomass burning [kg] OC-BIOB fullchem
aerosol
7 (I,J) ORGANIC CARBON from biofuels [kg] OC-BIOF fullchem
aerosol
8 (I,J) ORGANIC CARBON from biogenic sources [kg] OC-BIOG fullchem
aerosol
9 (I,J,L) Hydrophilic OC from Hydrophobic OC [kg] PL-OC=$ fullchem
aerosol 		ProdBCPIfromBCPO

ND07 diagnostic quantities for SOA simulations

The ND07 diagnostic quantities below are only defined for mechanisms with secondary organic aerosols (Standard, SOA, SOA-SVPOA).

ND07 # Dims Description Units Category Simulations netCDF equivalent Notes
10 (I,J) ORGANIC CARBON : a-pinene, b-pinene, sabinene, carene source [kg] OC-MTPA fullchem w/ SOA
11 (I,J) ORGANIC CARBON : limonene source [kg] OC-LIMO fullchem w/ SOA
12 (I,J) ORGANIC CARBON : terpinene, terpinolene, myrcene, ocimene, other monoterpenes source [kg] OC-MTPO fullchem
aerosol
13 (I,J) ORGANIC CARBON : sesquiterpene source [kg] OC-SESQ fullchem w/ SOA
15 (I,J,L) SOA produced from monoterpenes + sesquiterpenes [kg] PL-OC=$ fullchem w/ SOA
16 (I,J,L) SOA produced from isoprene [kg] PL-OC=$ fullchem w/ SOA
17 (I,J,L) SOA produced from light aromatics and IVOCs [kg] PL-OC=$ fullchem w/ SOA
18 (I,J,L) SOA produced from primary SVOCs [kg] PL-OC=$ fullchem w/ SOA
19 (I,J,L) SOA produced from POG + OH reaction [kg] PL-OC=$ fullchem w/ SOA
20 (I,J,L) SOAG production from GLYX in aerosol [kg] SOAGM=$ fullchem w/ SOA none Removed in v11-02
21 (I,J,L) SOAM production from MGLY in aerosol [kg] SOAGM=$ fullchem w/ SOA none Removed in v11-02
22 (I,J,L) SOAG production from GLYX in cloud [kg] SOAGM=$ fullchem w/ SOA none Removed in v11-02
23 (I,J,L) SOAM production from MGLY in cloud [kg] SOAGM=$ fullchem w/ SOA none Removed in v11-02

ND08: Sea salt emissions

ND08 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Accumulation mode seasalt [kg] SALTSRCE all EMIS_SALA_NATU Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
2 (I,J) Coarse mode seasalt [kg] SALTSRCE all EMIS_SALC_NATU " "

ND09: HCN and CH3CN sources and sinks

Obsolete.jpg

NOTE: The HCN/CH3CN simulation has been removed from GEOS-Chem, thus rendering this diagnostic obsolete. A new HCN/CH3CN simulation may be added to GEOS-Chem sometime in the future.

ND11: Acetone sources and sinks

ND11 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Acetone source from MONOTERPENES [at C/cm2/s] ACETSRCE fullchem
2 (I,J) Acetone source from METHYL BUTENOL [at C/cm2/s] ACETSRCE fullchem
3 (I,J) Acetone source from DIRECT BIOGENIC EMISSION [at C/cm2/s] ACETSRCE fullchem
4 (I,J) Acetone source from OCEANS [at C/cm2/s] ACETSRCE fullchem
5 (I,J) Acetone sink from OCEANS [at C/cm2/s] ACETSRCE fullchem

ND12: PBL diagnostics

NOTE: It appears that the implementation of HEMCO has disabled this diagnostic.

ND13: Sulfur emissions

ND13 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Biogenic DMS [kg S] DMS-BIOG fullchem
aerosol
2 (I,J,L) Aircraft SO2 (1 <= L <= ND13) [kg S] SO2-AC-$ fullchem
aerosol
3 (I,J,L) Anthropognic SO2 (1 <= L <= 2 ) [kg S] SO2-AN-$ fullchem
aerosol
4 (I,J) Biomass SO2 [kg S] SO2-BIOB fullchem
aerosol
5 (I,J) Biofuel SO2 [kg S] SO2-BIOF fullchem
aerosol
6 (I,J,L) Non-eruptive volcano SO2 (1 <= L <= ND13) [kg S] SO2-NV-$ fullchem
aerosol
7 (I,J,L) Eruptive volcano SO2 (1 <= L <= ND13) [kg S] SO2-EV-$ fullchem
aerosol
8 (I,J) Ship SO2 [kg S] SO2-SHIP fullchem
aerosol
9 (I,J,L) Anthropogenic SO4 (1 <= L <= 2 ) [kg S] SO4-AN-$ fullchem
aerosol
10 (I,J) Biofuel SO4 [kg S] SO4-BIOF fullchem
aerosol
11 (I,J) Natural NH3 [kg S] NH3-NATU fullchem
aerosol
12 (I,J) Anthropogenic NH3 [kg] NH3-AN-$ fullchem
aerosol
13 (I,J) Biomass NH3 [kg] NH3-BIOB fullchem
aerosol
14 (I,J) Biofuel NH3 [kg] NH3-BIOF fullchem
aerosol

ND14: Convective mass flux

ND14 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Mass change due to cloud convection [kg/s] CV-FLX-$ all CloudConvFlux_?ADV? NOTE: Will be replaced by new flux diagnostics in v11-03

ND15: Boundary layer mixing mass flux

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Mass change due to boundary-layer mixing [kg/s] TURBMC-$ all None yet To be replaced by new flux diagnostics in v11-03

ND16: Precipitation fractions

ND16 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Fraction of grid box having rainout + washout (large-scale precip) [unitless] WD-FRC-$ all None yet This diagnostic cannot be replicated easily in netCDF output. Will postpone implementation until at least v11-03.
2 (I,J,L) Fraction of grid box having rainout + washout (convectvive precip) [unitless] WD-FRC-$ all None yet Slot #2 of ND16 is always zero for GEOS-FP and MERRA-2, because GEOS-Chem only considers large-scale wet deposition when using these met data products.

ND17: Rainout fraction

ND17 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Fraction of soluble tracer lost to rainout (large-scale precip) [unitless] WD-LSR-$ all None yet This diagnostic cannot be replicated easily in netCDF output. Will postpone implementation until at least v11-03.
2 (I,J,L,N) Fraction of soluble tracer lost to rainout (convective precip) [unitless] WD-CVR-$ all None yet Slot #2 of ND17 is always zero for GEOS-FP and MERRA-2. This is because GEOS-Chem only considers large-scale wet deposition when using these met data products.

ND18: Washout fraction

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Fraction of soluble tracer lost to washout (large-scale precip) [unitless] WD-LSW-$ all None yet This diagnostic cannot be replicated easily in netCDF output. Will postpone implementation until at least v11-03.
2 (I,J,L,N) Fraction of soluble tracer lost to washout (convective precip) [unitless] WD-CVW-$ all None yet Slot #2 of ND18 is always zero for GEOS-FP and MERRA-2. This is because GEOS-Chem only considers large-scale wet deposition when using these met data products.

ND19: CH4 loss

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) CH4 removal by OH [kg CH4] CH4-LOSS CH4 None yet Postponed until v11-03

ND20: Save O3 P/L rates

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,1) O3 production rates [kg/m3/s] PORL-L=$ fullchem Prod_O3 Unit conversion may be needed
2 (I,J,L,2) O3 loss rates [1/m3/s] PORL-L=$ fullchem Loss_O3 Unit conversion may be needed

ND21: Cloud diagnostics

NOTE: Some of the netcdf diagnostic names include an asterisk. Also asterisked diagnostics contain WL1, WL2, or WL3 which are replaced with the 1st, 2nd, or 3rd AOD wavelengths respectively in the input.geos Radiation menu at run-time.

ND21 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) OPTD: Cloud optical depth [unitless] OD-MAP-$ fullchem
aerosol 		Met_OptD Stored in State_Met%OPTD
2 (I,J,L) CLDTOT: 3-D total cloud fraction (GEOS-4) unitless] OD-MAP-$ fullchem
aerosol 		Met_CldF Stored in State_Met%CLDF
4 (I,J,L) OPD: Mineral dust optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODDust
5 (I,J,L) SD: Mineral dust surface area [cm2/cm3] OD-MAP-$ fullchem
aerosol 		AerSurfAreaDust
6 (I,J,L) OPSO4: Sulfate optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL1nm_SO4* ?HYG? wildcard
7 (I,J,L) HGSO4: Hygroscopic growth of SO4 [unitless] OD-MAP-$ fullchem
aerosol 		AerHygroscopicGrowth_SO4 ?HYG? wildcard
8 (I,J,L) SSO4: Sulfate surface area [cm2/cm3] OD-MAP-$ fullchem
aerosol 		AerSurfArea_SO4 May use the ?HYG? wildcard
9 (I,J,L) OPBC: Black carbon optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL1nm_BCPI* ?HYG? wildcard
10 (I,J,L) HGBC: Hygroscopic growth of BC [unitless] OD-MAP-$ fullchem
aerosol 		AerHygroscopicGrowth_BCPI ?HYG? wildcard
11 (I,J,L) SBC: Black carbon surface area [cm2/cm3] OD-MAP-$ fullchem
aerosol 		AerSurfArea_BCPI May use the ?HYG? wildcard
12 (I,J,L) OPOC: Organic carbon optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL1nm_OCPI* ?HYG? wildcard
13 (I,J,L) HGOC: Hygroscopic growth of OC [unitless] OD-MAP-$ fullchem
aerosol 		AerHygroscopicGrowth_OCPI ?HYG? wildcard
14 (I,J,L) SOC: Organic carbon surface area [cm2/cm3] OD-MAP-$ fullchem
aerosol 		AerSurfArea_OCPI May use the ?HYG? wildcard
15 (I,J,L) OPSSa: Sea salt (accumulation mode) optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL1nm_SALA* ?HYG? wildcard
16 (I,J,L) HGSSa: Hygroscopic growth of SSa [unitless] OD-MAP-$ fullchem
aerosol 		AerHygroscopicGrowth_SALA ?HYG? wildcard
17 (I,J,L) SSSa: Sea salt (accumulation mode) surface area [cm2/cm3] OD-MAP-$ fullchem
aerosol 		AerSurfArea_SALA ?HYG? wildcard
18 (I,J,L) OPSSc: Sea salt (coarse mode) optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL1nm_SALC* ?HYG? wildcard
19 (I,J,L) HGSSc: Hygroscopic growth of SSc [unitless] OD-MAP-$ fullchem
aerosol 		AerHygroscopicGrowth_SALC ?HYG? wildcard
20 (I,J,L) SSSc: Sea salt (coarse mode) surface area [cm2/cm3] OD-MAP-$ fullchem
aerosol 		AerSurfArea_SALC ?HYG? wildcard
21 (I,J,L) OPD1: Dust bin 1 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL1nm_bin1* ?DUSTBIN? wildcard
22 (I,J,L) OPD2: Dust bin 2 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL1nm_bin2* ?DUSTBIN? wildcard
23 (I,J,L) OPD3: Dust bin 3 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL1nm_bin3* ?DUSTBIN? wildcard
24 (I,J,L) OPD4: Dust bin 4 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL1nm_bin4* ?DUSTBIN? wildcard
25 (I,J,L) OPD5: Dust bin 5 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL1nm_bin5* ?DUSTBIN? wildcard
26 (I,J,L) OPD6: Dust bin 6 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL1nm_bin6* ?DUSTBIN? wildcard
27 (I,J,L) OPD7: Dust bin 7 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL1nm_bin7* ?DUSTBIN? wildcard
28 (I,J,L) OPSO4: Sulfate optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL2nm_SO4* ?HYG? wildcard
29 (I,J,L) OPBC: Black carbon optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL2nm_BCPI* ?HYG? wildcard
30 (I,J,L) OPOC: Organic carbon optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL2nm_OCPI* ?HYG? wildcard
31 (I,J,L) OPSSa: Accum. sea salt optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL2nm_SALA* ?HYG? wildcard
32 (I,J,L) OPSSc: Coarse sea salt optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL2nm_SALC* ?HYG? wildcard
33 (I,J,L) OPD1:Dust bin 1 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL2nm_bin1* ?DUSTBIN? wildcard
34 (I,J,L) OPD2: Dust bin 2 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL2nm_bin2* ?DUSTBIN? wildcard
35 (I,J,L) OPD3: Dust bin 3 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL2nm_bin3* ?DUSTBIN? wildcard
36 (I,J,L) OPD4: Dust bin 4 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL2nm_bin4* ?DUSTBIN? wildcard
37 (I,J,L) OPD5: Dust bin 5 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL2nm_bin5* ?DUSTBIN? wildcard
38 (I,J,L) OPD6: Dust bin 6 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL2nm_bin6* ?DUSTBIN? wildcard
39 (I,J,L) OPD7: Dust bin 7 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL2nm_bin7* ?DUSTBIN? wildcard
40 (I,J,L) OPSO4: Sulfate optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL3nm_SO4* ?HYG? wildcard
41 (I,J,L) OPBC: Black carbon optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL3nm_BCPI* ?HYG? wildcard
42 (I,J,L) OPOC: Organic carbon optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL3nm_OCPI* ?HYG? wildcard
43 (I,J,L) OPSSa: Accum. sea salt optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL3nm_SALA* ?HYG? wildcard
44 (I,J,L) OPSSc: Coarse sea salt optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODHygWL3nm_SALC* ?HYG? wildcard
45 (I,J,L) OPD1:Dust bin 1 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL3nm_bin1* ?DUSTBIN? wildcard
46 (I,J,L) OPD2:Dust bin 2 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL3nm_bin2* ?DUSTBIN? wildcard
47 (I,J,L) OPD3: Dust bin 3 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL3nm_bin3* ?DUSTBIN? wildcard
48 (I,J,L) OPD4: Dust bin 4 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL3nm_bin4* ?DUSTBIN? wildcard
49 (I,J,L) OPD5: Dust bin 5 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL3nm_bin5* ?DUSTBIN? wildcard
50 (I,J,L) OPD6: Dust bin 6 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL3nm_bin6* ?DUSTBIN? wildcard
51 (I,J,L) OPD7: Dust bin 7 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ fullchem
aerosol 		AODDustWL3nm_bin7* ?DUSTBIN? wildcard
52 (I,J,L) ODSLA: Stratospheric liquid aerosol optical depth (600 nm) (UCX simulation only) [unitless] OD-MAP-$ fullchem
aerosol 		AODStratLiquidAerWL1nm*
(I,J,L) Stratospheric liquid aerosol optical depth (UCX simulation only) [unitless] OD-MAP-$ fullchem
aerosol 		AODStratLiquidAerWL2nm* Not in bpch output for v11-01, v11-02
(I,J,L) Stratospheric liquid aerosol optical depth (UCX simulation only) [unitless] OD-MAP-$ fullchem
aerosol 		AODStratLiquidAerWL3nm* Not in bpch output for v11-01, v11-02
53 (I,J,L) SASLA: Stratospheric liquid aerosol surface area (UCX simulation only) [cm2/cm3] OD-MAP-$ fullchem
aerosol 		AerSurfAreaStratLiquid
54 (I,J,L) NDSLA: Stratospheric liquid aerosol number density (UCX simulation only) [num/cm3] OD-MAP-$ fullchem
aerosol 		AerNumDensitryStratLiquid
55 (I,J,L) ODSPA: Polar stratospheric cloud type 1a/2 optical depth (600 nm) (UCX simulation only) [unitless] OD-MAP-$ fullchem
aerosol 		AODPolarStratCloudWL1nm*
(I,J,L) Polar stratospheric cloud type 1a/2 optical depth (UCX simulation only) [unitless] OD-MAP-$ fullchem
aerosol 		AODPolarStratCloudWL3nm* Not in bpch output for v11-01, v11-02
56 (I,J,L) SASPA: Polar stratospheric cloud type 1a/2 surface area (UCX simulation only) [cm2/cm3] OD-MAP-$ fullchem
aerosol 		AerSurfAreaPolarStratCloud
57 (I,J,L) NDSPA: Stratospheric particulate aerosol number density (UCX simulation only) [num/cm3] OD-MAP-$ fullchem
aerosol 		AerNumDensitryStratParticulate
58 (I,J,L) ISOPAOD: SOA from aqueous isoprene optical depth [unitless] OD-MAP-$ fullchem
aerosol 		AODSOAfromAqIsopreneWL1* New in v11-02
(I,J,L) SOA from aqueous isoprene optical depth [unitless] OD-MAP-$ fullchem
aerosol 		AODSOAfromAqIsopreneWL2* Not in bpch output for v11-01, v11-02
(I,J,L) SOA from aqueous isoprene optical depth [unitless] OD-MAP-$ fullchem
aerosol 		AODSOAfromAqIsopreneWL3* Not in bpch output for v11-01, v11-02
59 (I,J,L) AQAVOL: Aqueous aerosol volume [cm3/cm3] OD-MAP-$ fullchem
aerosol 		AerAqueousVolume New in v11-02

ND22: Photolysis diagnostics

NOTE: Users must specify the GEOS-Chem index, not the ND22 index, for ND22 in the Diagnostic Menu of input.geos.

ND22 # GC
Index 		Dims Description Units Category Simulations netCDF equivalent Notes
1 66 (I,J,L) J(NO2) [1/s] JV-MAP-$ fullchem Jval_NO2 or JNoon_NO2
  • Jval archives instantaneous values.
  • Jnoon archives the J-value nearest local noon
  • Use the ?PHO? wildcard to archive all photolysis species instead of listing the species name.
2 7 (I,J,L) J(HNO3) [1/s] JV-MAP-$ fullchem Jval_HNO3 or JNoon_HNO3
3 8 (I,J,L) J(H2O2) [1/s] JV-MAP-$ fullchem Jval_H2O2 or JNoon_H2O2
4 20 (I,J,L) J(CH2O) [1/s] JV-MAP-$ fullchem Jval_CH2O or JNoon_CH2O
5 2 (I,J,L) J(O3) [1/s] JV-MAP-$ fullchem Jval_O3 or JNoon_O3
6 2 (I,J,L) J(O3P) (standard and UCX simulations) OR or OH source from O3 photolysis (tropchem and SOA simulations) [1/s] JV-MAP-$ fullchem Jval_O1D or JNoon_O1d or Jval_O3O1DA or JNoon_O3O1DB
9 46 (I,J,L) J(BrO) [1/s] JV-MAP-$ fullchem Jval_BrO or JNoon_BrO
10 47 (I,J,L) J(HOBr) [1/s] JV-MAP-$ fullchem Jval_HOBr or JNoon_HOBr
11 49 (I,J,L) J(BrNO2) [1/s] JV-MAP-$ fullchem Jval_BrNO2 or JNoon_BrNO2
12 50 (I,J,L) J(BrNO3) [1/s] JV-MAP-$ fullchem Jval_BrNO3 or JNoon_?PHO?
13 51 (I,J,L) J(CHBr3) [1/s] JV-MAP-$ fullchem Jval_CHBr3 or JNoon_CHBr3
14 44 (I,J,L) J(Br2) [1/s] JV-MAP-$ fullchem Jval_Br2 or JNoon_Br2
15 1 (I,J,L) J(O2) [1/s] JV-MAP-$ fullchem Jval_O2 or JNoon_O2
16 69 (I,J,L) J(N2O) [1/s] JV-MAP-$ fullchem Jval_N2O or JNoon_N2O
17 1 (I,J,L) J(NO) [1/s] JV-MAP-$ fullchem Jval_NO or JNoon_NO
18 67 (I,J,L) J(NO3) [1/s] JV-MAP-$ fullchem Jval_NO3 or JNoon_NO3
19 83 (I,J,L) J(CFC11) [1/s] JV-MAP-$ fullchem Jval_CFC11 or JNoon_CFC11
20 84 (I,J,L) J(CFC12) [1/s] JV-MAP-$ fullchem Jval_CFC12 or JNoon_CFC12
21 74 (I,J,L) J(CCl4) [1/s] JV-MAP-$ fullchem Jval_CCl4 or JNoon_CCl4
22 76 (I,J,L) J(CH3Cl) [1/s] JV-MAP-$ fullchem Jval_CH3Cl or JNoon_?PHO?
23 9 (I,J,L) J(ACET) [1/s] JV-MAP-$ fullchem Jval_ACET or JNoon_ACET
24 11 (I,J,L) J(ALD2) [1/s] JV-MAP-$ fullchem Jval_ALD2 or JNoon_ALD2
25 13 (I,J,L) J(MVK) [1/s] JV-MAP-$ fullchem Jval_MVK or JNoon_MVK
26 14 (I,J,L) J(MACR) [1/s] JV-MAP-$ fullchem Jval_MACR or JNoon_MACR
27 59 (I,J,L) J(HAC) [1/s] JV-MAP-$ fullchem Jval_HAC or JNoon_HAC
28 60 (I,J,L) J(GLYC) [1/s] JV-MAP-$ fullchem Jval_GLYC or JNoon_GLYC

ND23: Mean OH

This diagnostic prints directly to stdout (which is redirected to the GEOS-Chem log file).

ND24 - ND26: Mass transport flux

For more information about how these diagnostics are defined, please see our Mass Flux (ND24/25/26) wiki page.

ND24 # Dims Description Units Category Simulations netCDF equivalent Notes
ND24 (I,J,L,N) East/west mass flux by transport [kg/s] EW-FLX-$ all AdvFluxZonal To be replaced by new flux diagnostics in v11-03
ND25 (I,J,L,N) North/south mass flux by transport [kg/s] NS-FLX-$ all AdvFluxMerid " "
ND26 (I,J,L,N) Up/down mass flux by transport [kg/s] UP-FLX-$ all AdvFluxVert " "

ND28: Biomass burning emissions

ND28 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) NO biomass emissions [molec/cm2/s] BIOBSRCE
4 (I,J) CO biomass emissions [molec/cm2/s] BIOBSRCE
5 (I,J) ALK4 biomass emissions [atoms C/cm2/s] BIOBSRCE
9 (I,J) ACET biomass emissions [atoms C/cm2/s] BIOBSRCE
10 (I,J) MEK biomass emissions [atoms C/cm2/s] BIOBSRCE
11 (I,J) ALD2 biomass emissions [atoms C/cm2/s] BIOBSRCE
18 (I,J) PRPE (lumped >=C3 alkenes) biomass emissions [atoms C/cm2/s] BIOBSRCE
19 (I,J) C3H8 biomass emissions [atoms C/cm2/s] BIOBSRCE
20 (I,J) CH2O biomass emissions [molec/cm2/s] BIOBSRCE
21 (I,J) C2H6 biomass emissions [atoms C/cm2/s] BIOBSRCE
26 (I,J) SO2 biomass emissions [molec/cm2/s] BIOBSRCE
30 (I,J) NH3 biomass emissions [molec/cm2/s] BIOBSRCE
34 (I,J) BC (black carbon) biomass emissions [molec/cm2/s] BIOBSRCE
35 (I,J) OC (organic carbon) biomass emissions [molec/cm2/s] BIOBSRCE
69 (I,J) CH4 biomass emissions [molec/cm2/s] BIOBSRCE

ND29: CO sources

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) CO from anthropogenic emissions [molec/cm2/s] CO--SRCE fullchem
tagCO 		EMIS_CO_ANTH Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
2 (I,J) CO from biomass burning emissions [molec/cm2/s] CO--SRCE fullchem
tagCO 		EMIS_CO_BIOM " "
3 (I,J) CO from biofuel burning emissions [molec/cm2/s] CO--SRCE fullchem
tagCO 		EMIS_CO_BIOF " "
4 (I,J) CO produced from methanol (currently not defined) [molec/cm2/s] CO--SRCE fullchem
tagCO 		none
5 (I,J) CO produced from monoterpenes [molec/cm2/s] CO--SRCE fullchem
tagCO 		none
6 (I,J) CO from ship emissions [molec/cm2/s] CO--SRCE fullchem
tagCO 		EMIS_CO_SHIP Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
For tagged CO simulations only:
7 (I,J) CO from anthropogenic + biofuel emissions over the US [molec/cm2/s] CO--SRCE tagCO Only available in bpch
8 (I,J) CO from aircraft emissions over the US [molec/cm2/s] CO--SRCE tagCO " "
9 (I,J) CO from ship emissions over the US [molec/cm2/s] CO--SRCE tagCO " "
10 (I,J) CO from anthropogenic + biofuel emissions over Europe [molec/cm2/s] CO--SRCE tagCO " "
11 (I,J) CO from aircraft emissions over Europe [molec/cm2/s] CO--SRCE tagCO " "
12 (I,J) CO from ship emissions over Europe [molec/cm2/s] CO--SRCE tagCO " "
13 (I,J) CO from anthropogenic + biofuel emissions over SE Asia [molec/cm2/s] CO--SRCE tagCO " "
14 (I,J) CO from aircraft emissions over SE Asia [molec/cm2/s] CO--SRCE tagCO " "
15 (I,J) CO from ship emissions over SE Asia [molec/cm2/s] CO--SRCE tagCO " "
16 (I,J) CO from anthropogenic + biofuel emissions elsewhere [molec/cm2/s] CO--SRCE tagCO " "
17 (I,J) CO from aircraft emissions elsewhere [molec/cm2/s] CO--SRCE tagCO " "
18 (I,J) CO from ship emissions elsewhere [molec/cm2/s] CO--SRCE tagCO " "
19 (I,J) CO from biomass burning emissions over South America [molec/cm2/s] CO--SRCE tagCO " "
20 (I,J) CO from biomass burning emissions over Africa [molec/cm2/s] CO--SRCE tagCO " "
21 (I,J) CO from biomass burning emissions over SE Asia [molec/cm2/s] CO--SRCE tagCO " "
22 (I,J) CO from biomass burning emissions over Oceania [molec/cm2/s] CO--SRCE tagCO " "
23 (I,J) CO from biomass burning emissions over Europe [molec/cm2/s] CO--SRCE tagCO " "
24 (I,J) CO from biomass burning emissions elsewhere [molec/cm2/s] CO--SRCE tagCO " "

ND30: Land map

ND30 Dimension LAND MAP Units Category
1 (I,J) GMAO land-water indices [unitless] LANDMAP

ND31: Pressure at model edges

ND31 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Pressure at the bottom of level L
(1 <= L <= ND31 ) 		[hPa] PEDGE-$ all Met_PEDGE

ND32: NO emissions

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) NO aircraft emissions [molec/cm2/s] NO-AC-$ fullchem EMIS_NO_AIRC Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
2 (I,J) NO anthropogenic emissions (includes ship) [molec/cm2/s] NO-AN-$ fullchem EMIS_NO_ANTH " "
3 (I,J) NO biomass burning emissions [molec/cm2/s] NO-BIOB fullchem EMIS_NO_BIOM " "
4 (I,J) NO biofuel burning emissions [molec/cm2/s] NO-BIOF fullchem EMIS_NO_BIOB " "
5 (I,J) NO fertilizer emissions [molec/cm2/s] NO-FERT fullchem EMIS_NO_FERT " "
6 (I,J,L) NO lightning emissions [molec/cm2/s] NO-LI-$ fullchem EMIS_NO_LGHTN " "
7 (I,J) NO soil emissions [molec/cm2/s] NO-SOIL fullchem EMIS_NO_SOIL " "

ND34: Biofuel emissions

NOTE: Many of the emissions inventories read into GEOS-Chem by the HEMCO emissions component lump biofuel emissions together with anthropogenic emissions. For such inventories, the contributions from biofuels will be included in the ND36 anthropogenic emissions diagnostic.

ND34 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) NO biofuel emissions [molec/cm2/s] BIOFSRCE all EMIS_NO_BIOF Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
4 (I,J) CO biofuel emissions [molec/cm2/s] BIOFSRCE all EMIS_CO_BIOF " "
5 (I,J) ALK4 biofuel emissions [atoms C/cm2/s] BIOFSRCE all EMIS_ALK4_BIOF " "
9 (I,J) ACET biofuel emissions [atoms C/cm2/s] BIOFSRCE all EMIS_ACET_BIOF " "
10 (I,J) MEK biofuel emissions [atoms C/cm2/s] BIOFSRCE all EMIS_MEK_BIOF " "
11 (I,J) ALD2 biofuel emissions [atoms C/cm2/s] BIOFSRCE all EMIS_ALD2_BIOF " "
18 (I,J) PRPE (lumped >=C3 alkenes) biofuel emissions [atoms C/cm2/s] BIOFSRCE all EMIS_PRPE_BIOF " "
19 (I,J) C3H8 biofuel emissions [atoms C/cm2/s] BIOFSRCE all EMIS_C3H8_BIOF " "
20 (I,J) CH2O biofuel emissions [molec/cm2/s] BIOFSRCE all EMIS_CH2O_BIOF " "
21 (I,J) C2H6 biofuel emissions [atoms C/cm2/s] BIOFSRCE all EMIS_C2H6_BIOF " "
26 (I,J) SO2 biofuel emissions [molec/cm2/s] BIOFSRCE all EMIS_SO2_BIOF " "
30 (I,J) NH3 biofuel emissions [molec/cm2/s] BIOFSRCE all EMIS_NH3_BIOF " "

ND36: Anthropogenic emissions

ND36 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) NO anthropogenic emissions [molec/cm2/s] ANTHSRCE all EMIS_NO_ANTH Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
4 (I,J) CO anthropogenic emissions [molec/cm2/s] ANTHSRCE all EMIS_CO_ANTH " "
5 (I,J) ALK4 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all EMIS_ALK4_ANTH " "
9 (I,J) ACET anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all EMIS_ACET_ANTH " "
10 (I,J) MEK anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all EMIS_MEK_ANTH " "
11 (I,J) ALD2 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all EMIS_ALD2_ANTH " "
18 (I,J) PRPE (lumped >=C3 alkenes) anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all EMIS_PRPE_ANTH " "
19 (I,J) C3H8 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all EMIS_C3H8_ANTH " "
20 (I,J) CH2O anthropogenic emissions [molec/cm2/s] ANTHSRCE all EMIS_CH2O_ANTH " "
21 (I,J) C2H6 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all EMIS_C2H6_ANTH " "
69 (I,J) CH4 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all EMIS_CH4_ANTH " "

ND37: Fraction of species scavenged in updrafts

ND37 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Fraction of tracer scavenged by in cloud updrafts in moist convection [unitless] MC-FRC-$ all WetLossConvFrac_?WET? NOTE: Had been inadvertently removed in v10, v11. Bpch and netCDF diagnostics both restored in v11-02.

ND38: Loss of species by convection

ND38 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Rainout loss of tracer in convective updrafts [kg/s] WETDCV-$ all WetLossConv_?WET?

ND39: Loss of species by rainout and washout

ND39 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Loss of species in large-scale precip [kg/s] WETDLS-$ all WetLossLS_?WET?

ND40: Plane flight diagnostic

This diagnostic does not save to the bpch file, but rather is output to the specified plane.log file. See the Planeflight menu for more information.

ND41: Afternoon PBL height

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Afternoon boundary layer heights (1200-1600 local time) [m] PBLDEPTH all None Not being output to netCDF in v11-02

ND42: Aerosol mass and PM2.5 diagnostics

These output are only available for simulations using secondary organic aerosols (Standard, SOA, SOA-SVPOA).

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) TSOA: Aerosol products of terpene oxidation [ug/m3] IJ-SOA-$ fullchem
aerosol 		TerpeneSOA
2 (I,J,L) ISOA: Aerosol products of isoprene oxidation [ug/m3] IJ-SOA-$ fullchem
aerosol 		IsopreneSOA
3 (I,J,L) ASOA: Aerosol products of light aromatics + IVOC oxidation [ug/m3] IJ-SOA-$ fullchem
aerosol 		AromaticSOA
4 (I,J,L) POA: Aerosols from SVOCs [ug/m3] IJ-SOA-$ fullchem
aerosol
5 (I,J,L OPOA: Aerosol products of POG oxidation [ug/m3] IJ-SOA-$ fullchem
aerosol
6 (I,J,L) Sum of all organic aerosol [ug/m3] IJ-SOA-$ fullchem
aerosol
7 (I,J,L) Sum of all organic carbon [ug/m3] IJ-SOA-$ fullchem
aerosol
8 (I,J,L) Sum of all biogenic organic aerosol [ug/m3] IJ-SOA-$ fullchem
aerosol
9 (I,J,L) BetaNO: NO branching ratio [ug C/m3] IJ-SOA-$ fullchem
aerosol
10 (I,J,L) POA: Aerosols from SVOCs [ug C/m3] IJ-SOA-$ fullchem
aerosol
11 (I,J,L) OPOA: Aerosol products of POG oxidation [ug/m3] IJ-SOA-$ fullchem
aerosol
12 (I,J,L) OC: Organic carbon (OCPI + OCPO) [ug C/m3] IJ-SOA-$ fullchem
aerosol
13 (I,J,L) BC: Black carbon (BCPI + BCPO) [ug C/m3] IJ-SOA-$ fullchem
aerosol
14 (I,J,L) SO4: Sulfate [ug/m3] IJ-SOA-$ fullchem
aerosol
15 (I,J,L) NH4: Ammonium [ug/m3] IJ-SOA-$ fullchem
aerosol
16 (I,J,L) NIT: Nitrate [ug/m3] IJ-SOA-$ fullchem
aerosol
17 (I,J,L) SAL: Sea salt aerosol (SALA + SALC) [ug/m3] IJ-SOA-$ fullchem
aerosol
18 (I,J,L) PM2.5: Particulate matter [ug/m3] IJ-SOA-$ fullchem
aerosol 		PM25
19 (I,J,L) SOAG: SOA product of GLYX [ug/m3] IJ-SOA-$ fullchem
aerosol
20 (I,J,L) SOAG: SOA product of MGLY [ug/m3] IJ-SOA-$ fullchem
aerosol

ND43: Chemical production of OH and HO2

ND43 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) OH [molec/cm3] CHEM-L=$ fullchem
CH4 		OHconcAfterChem
3 (I,J,L) HO2 [v/v] CHEM-L=$ fullchem HO2concAfterChem
4 (I,J,L) O1D [molec/cm3] CHEM-L=$ fullchem (w/ UCX) O1DconcAfterChem
5 (I,J,L) O3P [molec/cm3] CHEM-L=$ fullchem (w/ UCX) O3PconcAfterChem
6 (I,J,L) LBRO2H [molec/cm3] CHEM-L=$ none Obsolete; removed in v11-02
7 (I,J,L) LBRO2N [molec/cm3] CHEM-L=$ none Obsolete; removed in v11-02
8 (I,J,L) LTRO2H [molec/cm3] CHEM-L=$ none Obsolete; removed in v11-02
9 (I,J,L) LTRO2N [molec/cm3] CHEM-L=$ none Obsolete; removed in v11-02
10 (I,J,L) LXRO2H [molec/cm3] CHEM-L=$ none Obsolete; removed in v11-02
11 (I,J,L) LXRO2N [molec/cm3] CHEM-L=$ none Obsolete; removed in v11-02

ND44: Dry deposition diagnostics

ND44 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,M) Dry deposition fluxes (M = 1, State_Chm%nDryDep) [molec/cm2/s] DRYD-FLX all
2 (I,J,M) Dry deposition velocities (M = 1, State_Chm%nDryDep) [cm/s] DRYD-VEL all

ND45: Species concentrations

ND45 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Species mixing ratio for Levels = 1, LD45, averaged between HR1_OTH and HR2_OTH (time range from input.geos) [v/v] IJ-AVG-$ all SpeciesConc_?ADV?
SpeciesConc_?AER?
SpeciesConc_?ALL?
SpeciesConc_?DRY?
SpeciesConc_?FIX?
SpeciesConc_?GAS?
SpeciesConc_?KPP?
SpeciesConc_?PHO?
SpeciesConc_?VAR?
SpeciesConc_?WET?
 For more information about the various wildcards that can be used with the SpeciesConc netCDF diagnostic, please see this wiki post.

ND46: Biogenic emissions

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) ISOP: Isoprene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_ISOP_BIOG Diagnostic is archived by HEMCO. netCDF output goes to the HEMCO_diagnostics*.nc files.
2 (I,J) ACET: Acetone [atoms C/cm2/s] BIOGSRCE fullchem EMIS_ACET_BIOG " "
3 (I,J) PRPE: Lumped >= C3 alkenes [atoms C/cm2/s] BIOGSRCE fullchem EMIS_PRPE_BIOG " "
4 (I,J) MONX: Total monoterpenes
(APIN + BPIN + LIMO + SABI + MYRC + CARE + OCIM + OMON)		 [atoms C/cm2/s] BIOGSRCE fullchem EMIS_MONX_BIOG " "
5 (I,J) MBOX: Methyl Butenol [atoms C/cm2/s] BIOGSRCE all EMIS_MBOX_BIOG " "
6 (I,J) C2H4: Ethene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_C2H4_BIOG " "
7 (I,J) APIN: a-Pinene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_APIN_BIOG " "
8 (I,J) BPIN: b-Pinene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_BPIN_BIOG " "
9 (I,J) LIMO: Limonene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_LIMO_BIOG " "
10 (I,J) SABI: Sabinene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_SABI_BIOG " "
11 (I,J) MYRC: Myrcene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_MYRC_BIOG " "
12 (I,J) CARE: 3-Carene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_CARE_BIOG " "
13 (I,J) OCIM: Ocimene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_OCIM_BIOG " "
14 (I,J) FAXX: Formic acid (currently not activated) [molec/cm2/s] BIOGSRCE fullchem EMIS_FAXX_BIOG " "
15 (I,J) AAXX: Acetic acid (currently not activated) [molec/cm2/s] BIOGSRCE fullchem EMIS_AAXX_BIOG " "
16 (I,J) ALD2: Acetaldehyde [atoms C/cm2/s] BIOGSRCE fullchem EMIS_ALD2_BIOG " "
17 (I,J) OMON: Other monoterpenes [atoms C/cm2/s] BIOGSRCE fullchem EMIS_OMON_BIOG " "
18 (I,J) MOHX: Methanol (currently not activated) [molec/cm2/s] BIOGSRCE fullchem EMIS_MOHX_BIOG " "
19 (I,J) ETOH: Ethanol (currently not activated) [atoms C/cm2/s] BIOGSRCE fullchem EMIS_ETOH_BIOG " "
20 (I,J) FARN: Farnesene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_FARN_BIOG " "
21 (I,J) BCAR: b-Caryophyllene [atoms C/cm2/s] BIOGSRCE fullchem EMIS_BCAR_BIOG " "
22 (I,J) OSQT: Other sesquiterpenes [atoms C/cm2/s] BIOGSRCE fullchem EMIS_OSQT_BIOG " "
23 (I,J) CHBr3: Ocean bromoform emissions [kg/m2/s] BIOGSRCE fullchem EMIS_CHBr3_BIOG " "
24 (I,J) CH2Br2: Ocean dibromomethane emissions [kg/m2/s] BIOGSRCE fullchem EMIS_CH2Br2_BIOG " "
25 (I,J) Br2: Sea-salt Br2 emissions [kg/m2/s] BIOGSRCE fullchem EMIS_Br2_BIOG " "
26 (I,J) CH4: Methane [molec/c2/s] BIOGSRCE fullchem
CH4 		EMIS_CH4_BIOG " "

ND47: 24h average concentrations

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Daily (24-h) average tracer mixing ratio for Levels = L, LD47 [v/v] IJ-24H-$ all SpeciesConc Add this to a collection with frequency = 24 hours

ND48: Station timeseries

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1-N (I,J,L) GEOS-Chem advected species number for GAMAP = 1, nAdvect [v/v] IJ-AVG-$ all Not replicated in netCDF in v11-02
151 (I,J,L) OH concentration (Tracer # for GAMAP = 1) [molec/cm3] TIME-SER all Not replicated in netCDF in v11-02
152 (I,J,L) NOy concentration (Tracer # for GAMAP = 2) [v/v] TIME-SER all Not replicated in netCDF in v11-02
153 (I,J,L) Relative humidity (Tracer # for GAMAP = 3) [%] TIME-SER all Not replicated in netCDF in v11-02
154 (I,J,L) 3-D Cloud fractions (Tracer # for GAMAP = 4) [unitless] TIME-SER all Not replicated in netCDF in v11-02
155 (I,J) Column optical depths (Tracer # for GAMAP = 5) [unitless] TIME-SER all Not replicated in netCDF in v11-02
156 (I,J) Cloud top heights (Tracer # for GAMAP = 6) [hPa] TIME-SER all Not replicated in netCDF in v11-02
157 (I,J,L) Air density (Tracer # for GAMAP = 7) [molec/cm3] TIME-SER all Not replicated in netCDF in v11-02
158 (I,J,L) Total sea salt tracer concentration (Tracer # for GAMAP = 8) [unitless] TIME-SER all Not replicated in netCDF in v11-02
159 (I,J) PBL heights (Tracer # for GAMAP = 1) [m] PBLDEPTH all Not replicated in netCDF in v11-02
160 (I,J) PBL heights (Tracer # for GAMAP = 2) [levels] PBLDEPTH all Not replicated in netCDF in v11-02
161 (I,J,L) Grid box height (Tracer # for GAMAP = 1) [m] BXHGHT-$ all Not replicated in netCDF in v11-02
162 (I,J,L) Pressure at level edges (Tracer # for GAMAP = 1) [hPa] PEDGE-$ all Not replicated in netCDF in v11-02
163 (I,J) Sea level pressure (Tracer # for GAMAP = 18) [hPa] DAO-FLDS all Not replicated in netCDF in v11-02
164 (I,J,L) Zonal wind (a.k.a. U-wind) (Tracer # for GAMAP = 1) [m/s] DAO-3D-$ all Not replicated in netCDF in v11-02
165 (I,J,L) Meridional wind (a.k.a. V-wind) (Tracer # for GAMAP = 2) [m/s] DAO-3D-$ all Not replicated in netCDF in v11-02
166 (I,J,L) Temperature (Tracer # for GAMAP = 3) [K] DAO-3D-$ all Not replicated in netCDF in v11-02
167 (I,J,L) Sulfate aerosol optical depth (Tracer # for GAMAP = 6) [unitless] OD-MAP-$ all Not replicated in netCDF in v11-02
168 (I,J,L) Black carbon aerosol optical depth (Tracer # for GAMAP = 9) [unitless] OD-MAP-$ all Not replicated in netCDF in v11-02
169 (I,J,L) Organic carbon aerosol optical depth (Tracer # for GAMAP = 12) [unitless] OD-MAP-$ all Not replicated in netCDF in v11-02
170 (I,J,L) Accumulation mode seasalt optical depth (Tracer # for GAMAP = 15) [unitless] OD-MAP-$ all Not replicated in netCDF in v11-02
171 (I,J,L) Coarse mode seasalt optical depth (Tracer # for GAMAP = 18) [unitless] OD-MAP_$ all Not replicated in netCDF in v11-02
172 (I,J,L) Total dust optical depth (Tracer # for GAMAP = 4) [unitless] OD-MAP-$ all Not replicated in netCDF in v11-02
173-179 (I,J,L) Size resolved dust optical depth (Tracer # for GAMAP = 21-27) [unitless] OD-MAP-$ all Not replicated in netCDF in v11-02

ND49: Instantaneous timeseries

ND49 # Dims Description Units Category Simulations netCDF equivalent Notes
1-N (I,J,L) GEOS-Chem advected species number for GAMAP = 1, nAdvect [v/v] IJ-AVG-$ all SpeciesConc_?ADV? Any field of the State_Chm, State_Diag, or State_Met objects can be archived to an instantaneous netCDF collection.
151 (I,J,L) OH concentration (Tracer # for GAMAP = 1) [molec/cm3] TIME-SER all SpeciesConc_OH " "
152 (I,J,L) NOy concentration (Tracer # for GAMAP = 2) [v/v] TIME-SER all " "
153 (I,J,L) Relative humidity (Tracer # for GAMAP = 3) [%] TIME-SER all Met_RH " "
154 (I,J,L) 3-D Cloud fractions (Tracer # for GAMAP = 4) [unitless] TIME-SER all Met_CLDF " "
155 (I,J) Column optical depths (Tracer # for GAMAP = 5) [unitless] TIME-SER all " "
156 (I,J) Cloud top heights (Tracer # for GAMAP = 6) [hPa] TIME-SER all Met_CLDTOPS " "
157 (I,J,L) Air density (Tracer # for GAMAP = 7) [molec/cm3] TIME-SER all Met_AIRDEN (dry)
Met_MAIRDEN (moist) 		" "
158 (I,J,L) Total sea salt tracer concentration (Tracer # for GAMAP = 8) [unitless] TIME-SER all " "
159 (I,J) PBL heights (Tracer # for GAMAP = 1) [m] PBLDEPTH all " "
160 (I,J) PBL heights (Tracer # for GAMAP = 2) [levels] PBLDEPTH all " "
161 (I,J,L) Grid box height (Tracer # for GAMAP = 1) [m] BXHGHT-$ all Met_BXHEIGHT " "
162 (I,J,L) Pressure at level edges (Tracer # for GAMAP = 1) [hPa] PEDGE-$ all Met_PEDGE " "
163 (I,J) Sea level pressure (Tracer # for GAMAP = 18) [hPa] DAO-FLDS all Met_SLP " "
164 (I,J,L) Zonal wind (a.k.a. U-wind) (Tracer # for GAMAP = 1) [m/s] DAO-3D-$ all Met_U " "
165 (I,J,L) Meridional wind (a.k.a. V-wind) (Tracer # for GAMAP = 2) [m/s] DAO-3D-$ all Met_V " "
166 (I,J,L) Temperature (Tracer # for GAMAP = 3) [K] DAO-3D-$ all Met_T " "
167 (I,J,L) Sulfate aerosol optical depth (Tracer # for GAMAP = 6) [unitless] OD-MAP-$ all " "
168 (I,J,L) Black carbon aerosol optical depth (Tracer # for GAMAP = 9) [unitless] OD-MAP-$ all " "
169 (I,J,L) Organic carbon aerosol optical depth (Tracer # for GAMAP = 12) [unitless] OD-MAP-$ all " "
170 (I,J,L) Accumulation mode seasalt optical depth (Tracer # for GAMAP = 15) [unitless] OD-MAP-$ all " "
171 (I,J,L) Coarse mode seasalt optical depth (Tracer # for GAMAP = 18) [unitless] OD-MAP_$ all " "
172 (I,J,L) Total dust optical depth (Tracer # for GAMAP = 4) [unitless] OD-MAP-$ all " "
173-179 (I,J,L) Size resolved dust optical depth (Tracer # for GAMAP = 21-27) [unitless] OD-MAP-$ all " "
180 (I,J) PARDF (diffuse PAR) (Tracer # for GAMAP = 20) [W/m2] DAO-FLDS all Met_PARDF " "
181 (I,J) PARDR (direct PAR) (Tracer # for GAMAP = 21) [W/m2] DAO-FLDS all Met_PARDR " "
182 (I,J) Daily LAI (leaf area index) (Tracer # for GAMAP = 9) [cm2/cm2] all TIME-SER Met_XLAI " "
183 (I,J) Temperature at 2m (i.e. proxy for surface air temperature) (Tracer # for GAMAP = 5) [K] DAO-FLDS all Met_T2M " "
184 (I,J) Accumulated precipitation (Tracer # for GAMAP = 3) [mm/day] DAO-FLDS all Met_PRECTOT " "

ND50: 24h average timeseries

This diagnostic archives the the same diagnostic quantities as ND49 (listed above)

NOTE: Any field of the State_Chm, State_Diag, or State_Met objects can be sent to a netcdf time-averaged collection with a frequency of 24 hours.

ND51 and ND51b: Satellite timeseries

This diagnostic rchives the the same diagnostic quantities as ND49 (listed above)

NOTE: There is no netCDF-equivalent diagnostic in GEOS-Chem v11-02. Possibly in a subsequent version.

ND52: Gamma HO2

ND52 Dimension GAMMA HO2 Units Category
1 (I,J,L) Uptake coefficient for HO2 by aerosols
NOTE: This diagnostic is mostly obsolete. We now set this value in the Chemistry Menu of input.geos. 		[unitless] GAMMA

ND53: POPs diagnostics

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Total POPs emissions [kg] PG-SRCE POPS
2 (I,J) POP OC emissions [kg] PG-SRCE POPS
3 (I,J) POP BC emissions [kg] PG-SRCE POPS
4 (I,J) Gas-phase POPs emissions [kg] PG-SRCE POPS
5 (I,J) Secondary emissions from soil [kg] PG-SRCE POPS
6 (I,J) Secondary emissions from lakes [kg] PG-SRCE POPS
7 (I,J) Secondary emissions from leaves [kg] PG-SRCE POPS
8 (I,J) Secondary positive soil flux [ng/m2/day] PG-SRCE POPS
9 (I,J) Secondary negative soil flux [ng/m2/day] PG-SRCE POPS
10 (I,J) Secondary positive lake flux [ng/m2/day] PG-SRCE POPS
11 (I,J) Secondary negative lake flux [ng/m2/day] PG-SRCE POPS
12 (I,J) Secondary positive leaf flux [ng/m2/day] PG-SRCE POPS
13 (I,J) Secondary negative leaf flux [ng/m2/day] PG-SRCE POPS
14 (I,J) Fugacity ratios soil/air [unitless] PG-SRCE POPS
15 (I,J) Fugacity ratios lake/air [unitless] PG-SRCE POPS
16 (I,J) Fugacity ratios leaf/air [unitless] PG-SRCE POPS
17 (I,J,L) Gross POP OC lost to gas [kg] PG-PP POPS
18 (I,J,L) Gross POP OC formed from gas [kg] PG-PP POPS
19 (I,J,L) Gross POP BC lost to gas [kg] PG-PP POPS
20 (I,J,L) Gross POP BC formed from gas [kg] PG-PP POPS
21 (I,J,L) Production of oxidized POPG from reaction with OH [kg] PG-PP POPS
22 (I,J,L) Production of oxidized POPOCPO from reaction with O3 [kg] PG-PP POPS
23 (I,J,L) Production of oxidized POPOCPI from reaction with O3 [kg] PG-PP POPS
24 (I,J,L) Production of oxidized POPBCPO from reaction with O3 [kg] PG-PP POPS
25 (I,J,L) Production of oxidized POPBCPI from reaction with O3 [kg] PG-PP POPS
26 (I,J,L) Production of oxidized POPOCPO from reaction with NO3 [kg] PG-PP POPS
27 (I,J,L) Production of oxidized POPOCPI from reaction with NO3 [kg] PG-PP POPS
28 (I,J,L) Production of oxidized POPBCPO from reaction with NO3 [kg] PG-PP POPS
29 (I,J,L) Production of oxidized POPBCPI from reaction with NO3 [kg] PG-PP POPS

ND54: Time in troposphere

ND54 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Computes the amount of time that a given grid box spends in the troposphere [1] TIME-TPS all

ND55: Tropopause diagnostics

ND55 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Level at which the dynamic tropopause occurs [unitless] TR-PAUSE all Met_TROPLEV
2 (I,J) Height of the dynamic tropopause [km] TR-PAUSE all Met_TROPHT
3 (I,J) Pressure of the dynamic tropopause [mb] TR-PAUSE all Met_TROPP

ND56: Lightning diagnostics

ND56 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Total lightning flash rate [flashes/min/km2] LFLASH-$ fullchem
2 (I,J) Intra-cloud flash rate [flashes/min/km2] LFLASH-$ fullchem
3 (I,J) Cloud-ground flash rate [flashes/min/km2] LFLASH-$ fullchem
4 (I,J) Lightning cloud top height [level] LFLASH-$ fullchem

ND57: Potential temperature

ND57 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Potential temperature [K] THETA-$ all Met_THETA

ND58: CH4 emissions

ND58 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) CH4-TOT: Total emissions [kg] CH4-EMIS CH4 netCDF will be available in v11-03
2 (I,J) CH4-GAO: Gas & Oil emissions [kg] CH4-EMIS CH4 " "
3 (I,J) CH4-COL: Coal emisisons [kg] CH4-EMIS CH4 " "
4 (I,J) CH4-LIV: Livestock emissions [kg] CH4-EMIS CH4 " "
5 (I,J) CH4-WST: Waste emisisons [kg] CH4-EMIS CH4 " "
6 (I,J) CH4-BFL: Biofuel emissions [kg] CH4-EMIS CH4 " "
7 (I,J) CH4-RIC: Rice field emissions [kg] CH4-EMIS CH4 " "
8 (I,J) CH4-OTA: Other anthropogenic emissions [kg] CH4-EMIS CH4 " "
9 (I,J) CH4-BBN: Biomass burning emissions [kg] CH4-EMIS CH4 " "
10 (I,J) CH4-WTL: Wetland emissions [kg] CH4-EMIS CH4 " "
11 (I,J) CH4-SAB: Soil absorption [kg] CH4-EMIS CH4 " "
12 (I,J) CH4-OTN: Other natural emissions [kg] CH4-EMIS CH4 " "

ND59: TOMAS size-resolved aerosol emissions

ND59 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Size-resolved primary aerosol number emission [No.] NK-EMISS TOMAS
2 (I,J,L) Size-resolved primary aerosol sulfate mass emission [kg S] SF-EMIS TOMAS
3 (I,J,L) Size-resolved primary aerosol sea-salt emission [kg] SS-EMIS TOMAS
4 (I,J,L) Size-resolved primary Hydrophillic EC mass emission [kg] ECIL-SRC TOMAS
5 (I,J,L) Size-resolved primary Hydrophobic EC mass emission [kg] ECOB-SRC TOMAS
6 (I,J,L) Size-resolved primary Hydrophillic OC mass emission [kg] OCIL-SRC TOMAS
7 (I,J,L) Size-resolved primary Hydropobic OC mass emission [kg] OCOB-SRC TOMAS
8 (I,J,L) Size-resolved dust mass emission [kg] DUST-SRC TOMAS

ND60

TOMAS simulations: Aerosol microphysics rate

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Condensation rate [no.] or [kg] TMS-COND TOMAS
2 (I,J,L) Coagulation rate [no.] or [kg] TMS-COAG TOMAS
3 (I,J,L) Nucleation rate [no.] or [kg] TMS-NUCL TOMAS
4 (I,J,L) Aqueous oxidation rate [no.] or [kg] TMS-AQOX TOMAS
5 (I,J,L) Accumulated error fixed [no.] or [kg] AERO-FIX TOMAS
6 (I,J,L) SOA condensation rate [no.] or [kg] TMS-SOA TOMAS

Non-TOMAS simulations: Wetland fraction

ND59 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Wetland fraction unitless WET-FRAC CH4

ND61: TOMAS 3-D rate

ND61 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Particle Dp >10 nm formation rate [cm-3s-1] TOMAS-3D TOMAS
2 (I,J,L) Nucleation rate (cluster size) [cm-3s-1] TOMAS-3D TOMAS

ND62: Instantaneous columns

ND62 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,N) I-J instantaneous integrated column density for tracers [molec/cm2] or
[atoms C/cm2] 		INST-MAP all none Removed in v11-02

ND63: Ship emission diagnostics

ND63 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Fraction of NOx remaining unitless SHIP-$$$ fullchem
2 (I,J) Integrated Ozone Production Efficiency (OPE) unitless SHIP-$$$ fullchem
3 (I,J) Ship plume NOx remaining [molec/cm2/s] SHIP-$$$ fullchem
4 (I,J) Ship plume Ox production [molec/cm2/s] SHIP-$$$ fullchem
5 (I,J) Ship NOx emissions [molec/cm2/s] SHIP-$$$ fullchem

ND64: Radiative flux

ND64 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Net UV flux in bin [W/m2] FJX-FLUX fullchem NOTE: Might be broken in v11-01 and v11-02
2 (I,J,L) Direct UV flux in bin [W/m2] FJX-FLUX fullchem NOTE: Might be broken in v11-01 and v11-02
3 (I,J,L) Diffuse UV flux in bin [W/m2] FJX-FLUX fullchem NOTE: Might be broken in v11-01 and v11-02

ND65: Chemical production and loss diagnostics

ND65 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Chemical family P/L rates. See the FlexChem wiki page for more information. [molec/cm3/s] PORL-L=$ fullchem
tagCO
tagO3 		Prod_?PRD?
Loss_?LOS?

ND66: GMAO 3-D met fields

NOTE: Any field of the State_Met object can be saved out to netCDF diagnostic output files under the diagnostic name: Met_<fieldname>.

ND66 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) UWND : U-winds [m/s] DAO-3D-$ all Met_U
2 (I,J,L) VWND : V-winds [m/s] DAO-3D-$ all Met_V
3 (I,J,L) TMPU : Temperature [K] DAO-3D-$ all Met_T
4 (I,J,L) SPHU : Specific humidity [g H20/kg air] DAO-3D-$ all Met_SPHU
5 (I,J,L) CMFMC: Convective Mass Flux [kg/m2/s] DAO-3D-$ all Met_CMFMC NOTE: Met_CMFMC must be placed into a netCDF collection defined on level edges
6 (I,J,L) DTRAIN : Detrainment Flux [kg/m2/s] DAO-3D-$ all Met_DTRAIN

ND67: GMAO 2-D met fields

NOTE: Any field of the State_Met object can be saved out to netCDF diagnostic output files under the diagnostic name: Met_<fieldname>.

ND67 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) HFLUX: sensible heat flux from surface [W/m2] DAO-FLDS all Met_HFLUX
2 (I,J) RADSWG: solar radiation at the ground [W/m2] DAO-FLDS all Met_RADSWG
3 (I,J) PRECTOT: total precipitation at the ground [mm/day] DAO-FLDS all Met_PRECTOT
4 (I,J) PRECCON: total convective precipitation at the ground [mm/day] DAO-FLDS all Met_PRECCON
5 (I,J) TS: surface air temperature
For GEOS-4, GEOS-5, and MERRA, this is really the air temperature at 2 m altitude above the surface. 		[K] DAO-FLDS all Met_TS
6 (I,J) RADSWT: solar radiation at the top of the atmosphere [W/m2] DAO-FLDS all Met_RADSWT
7 (I,J) USTAR: friction velocity [m/s] DAO-FLDS all Met_USTAR
8 (I,J) Z0: surface roughness height [m] DAO-FLDS all Met_Z0
9 (I,J) PBL (aka PBLM): planetary boundary layer depth [m] DAO-FLDS all Met_PBL
10 (I,J) CLDFRC: column cloud fraction [0 - 1] DAO-FLDS all Met_CLDFRC
11 (I,J) U10M: U-winds at 10 meters altitude [m/s] DAO-FLDS all Met_U10M
12 (I,J) V10M: V-winds at 10 meters altitude [m/s] DAO-FLDS all Met_V10M
13 (I,J) PS-PBL: Boundary Layer Top Pressure [hPa] DAO-FLDS all None
14 (I,J) ALBD: Surface Albedo [unitless] DAO-FLDS all Met_ALBD
15 (I,J) PHIS: Geopotential Heights [m] DAO-FLDS all Met_PHIS
16 (I,J) CLTOP : Cloud Top Height [levels] DAO-FLDS all Met_CLDTOPS
17 (I,J) TROPP: Tropopause pressure [hPa] DAO-FLDS all Met_TROPP
18 (I,J) SLP: Sea Level pressure (read directly from the met fields) [hPa] DAO-FLDS all Met_SLP
19 (I,J) TSKIN : Ground / Sea Surface Temp [K] DAO-FLDS all Met_TSKIN
20 (I,J) PARDF : Photosynthetically active diffuse radiation [W/m2] DAO-FLDS all Met_PARDF
21 (I,J) PARDR : Photosynthetically active direct radiation [W/m2] DAO-FLDS all Met_PARDR
22 (I,J) GWETTOP: Top soil wetness [unitless] DAO-FLDS all Met_GWETTOP
23 (I,J) EFLUX: Latent heat flux [W/m2] DAO-FLDS all Met_EFLUX

ND68: Air mass and related quantities

NOTE: Any field of the State_Met object can be saved out to netCDF diagnostic output files under the diagnostic name: Met_<fieldname>.

ND68 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) BXHEIGHT: Grid box heights [m] BXHGHT-$ all Met_BXHEIGHT
2 (I,J,L) AD: Air mass in grid box [kg] BXHGHT-$ all Met_AD
3 (I,J,L) AVGW : Mixing ratio of water vapor [v/v] BXHGHT-$ all Met_AVGW
4 (I,J,L) AIRNUMDEN: Air number density [molec air/cm3] BXHGHT-$ all Met_AIRNUMDEN
5 (I,J,L) T: Temperature [K] BXHGHT-$ all Met_T
6 (I,J,L) PMID: Pressure at average pressure level [hPa] BXHGHT-$ all Met_PMID
7 (I,J,L) PEDGE: Presure at grid box lower edge [hPa] BXHGHT-$ all Met_PEDGE
8 (I,J,L) RH: Relative humidity [%] BXHGHT-$ all Met_RH

ND69: Surface areas

ND69 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) DXYP: grid box surface areas [m2] DXYP all AREA Surface area in m2 is written to each netCDF diagnostic file created by HEMCO or History; no need to request it explicitly

ND70: Print debug output

This diagnostic does not print to bpch or netCDF, but toggles debug printout to the GEOS-Chem log file.

ND71: Hourly maximum mixing ratio

ND71 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,N) Hourly maximum tracer mixing ratio at the surface [v/v] IJ-MAX-$ all None Will not be converted to netCDF in v11-02

ND72: RRTMG diagnostics

ND72 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,N) All-sky TOA short-wave radiation W/m2 RADMAP-$ RRTMG RadAllSkySWTOA NetCDF output not yet activated in v11-02
2 (I,J,N) All-sky surface short-wave radiation W/m2 RADMAP-$ RRTMG RadAllSkySWSurf NetCDF output not yet activated in v11-02
3 (I,J,N) All-sky TOA long-wave radiation W/m2 RADMAP-$ RRTMG RadAllSkyLWTOA NetCDF output not yet activated in v11-02
4 (I,J,N) All-sky surface long-wave radiation W/m2 RADMAP-$ RRTMG RadAllSkyLWSurf NetCDF output not yet activated in v11-02
5 (I,J,N) Clear-sky TOA short-wave radiation W/m2 RADMAP-$ RRTMG RadClrSkySWTOA NetCDF output not yet activated in v11-02
6 (I,J,N) Clear-sky surface short-wave radiation W/m2 RADMAP-$ RRTMG RadClrSkySWSurf NetCDF output not yet activated in v11-02
7 (I,J,N) Clear-sky TOA long-wave radiation W/m2 RADMAP-$ RRTMG RadClrSkyLWTOA NetCDF output not yet activated in v11-02
8 (I,J,N) Clear-sky surface long-wave radiation W/m2 RADMAP-$ RRTMG RadClrSkyLWSurf NetCDF output not yet activated in v11-02

ND73: ISORROPIA diagnostics

ND73 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,N) ISORROPIA aerosol pH 1 ISRPIA-$ fullchem
aerosol 		Chem_PHSAV Stored in State_Chm%PHSAV
2 (I,J,N) ISORROPIA H+ concentration [M] ISRPIA-$ fullchem
aerosol 		Chem_HPLUSAV Stored in State_Chm%HPLUSSAV
3 (I,J,N) ISORROPIA aerosol water [μg/m3] ISRPIA-$ fullchem
aerosol 		Chem_WATERSAV Stored in State_Chm%WATERSAV
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