Sandbox: Difference between revisions

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{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center"


<!-- ======================================================== -->
|-height="50" bgcolor="#00AAAA" align="center"
<!-- ===== REFERENCE: TITLE                            ===== -->
|colspan="2"|<p><font color="#FFFFFF" size="+2">'''Reference Section'''</font></p>
<!-- ======================================================== -->
<p>&nbsp;</p>
<table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center">


<tr bgcolor="#00AAAA">
|-valign="top" bgcolor="#CCCCCC"
<th colspan="2" height="50" valign="middle"><p><font color="#FFFFFF" size="+2">Reference Section</font></p></th>
!width="500px"|<big>IDL</big>
</tr>
!width="500px"|<big>GAMAP</big>


<!-- ======================================================== -->
|-valign="top"
<!-- ===== REFERENCE: FIRST ROW                        ===== -->
| <!-- IDL -->
<!-- ======================================================== -->
<tr bgcolor="#cccccc">
<th width="50%"scope="col"><big>IDL</big></th>
<th width="50%"scope="col"><big>GAMAP</big></th>
</tr>
 
<tr>
 
<!-- IDL: Links -->
<td width="50%" valign="top">
* [http://www.exelisvis.com/ Exelis Visual Information Solutions (vendor)]  
* [http://www.exelisvis.com/ Exelis Visual Information Solutions (vendor)]  
* [http://www.exelisvis.com/docs/routines-1.html Online IDL Reference Manual @ Exelis website]
* [http://www.exelisvis.com/docs/routines-1.html Online IDL Reference Manual @ Exelis website]
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* [http://cimss.ssec.wisc.edu/~gumley/doc/idltips.pdf The Underground Guide to IDL by Liam Gumley (PDF)]
* [http://cimss.ssec.wisc.edu/~gumley/doc/idltips.pdf The Underground Guide to IDL by Liam Gumley (PDF)]
* [[Reading binary files in IDL]]
* [[Reading binary files in IDL]]
</td>
| <!-- GAMAP -->
 
<!-- Diagnostics: Links -->
<td width="50%" valign="top">
* [http://acmg.seas.harvard.edu/gamap/ GAMAP web page]
* [http://acmg.seas.harvard.edu/gamap/ GAMAP web page]
* [http://acmg.seas.harvard.edu/gamap/doc/ GAMAP on-line users' guide]
* [http://acmg.seas.harvard.edu/gamap/doc/ GAMAP on-line users' guide]
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**[[Date and time computations with GAMAP]]
**[[Date and time computations with GAMAP]]
**[[Text manipulation with GAMAP]]
**[[Text manipulation with GAMAP]]
</td>
</tr>
{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center"
|-height="50" bgcolor="#00AAAA" align="center"
|colspan="2"|<p><font color="#FFFFFF" size="+2">Reference Section</font></p>
|-valign="top" bgcolor="#CCCCCC"
!width="500px"|<big>Coding</big>
!width="500px"|<big>Diagnostics</big>
|-valign="top"
| <!-- Coding -->
* [[GEOS-Chem versions under development]]
* [[Bugs and fixes|List of GEOS-Chem bugs and in which version they were resolved]]
* [[Currently unresolved issues in GEOS-Chem]]
* [[Common GEOS-Chem error messages]]
* [[Known issues caused by compiler bugs|Known GEOS-Chem issues caused by compiler bugs]]
* [[GEOS-Chem performance]]
* [[Machine issues and portability]]
* [[Passing array arguments efficiently in GEOS-Chem]]
* [[Floating point math issues]]
* [[Version control with Git]]
| <!-- Diagnostics -->
* [http://acmg.seas.harvard.edu/geos/doc/man/appendix_5.html Overview of diagnostics characteristics]
* [[Diagnostic time step]]
* [[Mass Flux (ND24/25/26)]]
* [[Additional diagnostics]]


|-valign="top" bgcolor="#CCCCCC"
|-valign="top" bgcolor="#CCCCCC"
!width="500px"|<big>Emissions</big>
!width="500px"|<big>Fortran</big>
!width="500px"|<big>Chemistry</big>
!width="500px"|<big>Perl</big>


|-valign="top"
|-valign="top"
|<!-- Emissions -->
|<!-- Fortran -->
* [[HEMCO|HEMCO emissions component]]
* [[HEMCO data directories]]
* [[Aerosol emissions]]
* [[Aircraft emissions]]
* [[Anthropogenic emissions]]
* [[Scale factors for anthropogenic emissions]]
* [[Biofuel emissions]]
* [[Biogenic emissions]]
* [[Biomass burning emissions]]
* [[Lightning NOx emissions]]
* [[Ship emissions]]
* [[Soil NOx emissions]]
* [[Volcanic SO2 emissions from Aerocom|Volcanic emissions]]
* [[Historical and Future Emissions|Historical and future emissions]]
|<!-- Chemistry -->
* [[GEOS-Chem chemistry mechanisms]]
* [[GEOS-Chem chemistry mechanisms#Stratospheric chemistry|Stratopsheric chemistry options]]
* [[GEOS-Chem chemistry mechanisms#Specialty simulations|Specialty simulations (aka "offline simulations")]]
* Other resources
** [[Chemistry Issues]]
** [[Process Analysis Diagnostics]]
** [[Photolysis mechanism|Photolysis mechanisms used in GEOS-Chem]]
** [[DSMACC chemical box model]]
** [[Isoprene|List of recent papers about isoprene]]
** [[Linking GEOS-Chem to CMAQ]]
** [[Coupling GEOS-Chem with RRTMG]]
*[[GEOS-Chem species database]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
*[[Physical properties of GEOS-Chem species]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
*[[Species_indexing_in_GEOS-Chem|Species and tracer indexing in GEOS-Chem]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
 
<!-- ======================================================== -->
<!-- ===== REFERENCE: SECOND ROW                        ===== -->
<!-- ======================================================== -->
 
<!-- Header title -->
<tr bgcolor="#cccccc">
<th width="50%"scope="col"><big>Fortran</big></th>
<th width="50%"scope="col"><big>Perl</big></th>
</tr>
 
<tr>
 
<!-- Fortran: Links -->
<td width="50%" valign="top">
* [[Intel Fortran Compiler]]
* [[Intel Fortran Compiler]]
** [http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v11.pdf Version 11.1]
** [http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v11.pdf Version 11.1]
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* [http://www.kcl.ac.uk/kis/support/cc/fortran/f90home.html#1.0 Fortran 90 Home Page at King's College, London]
* [http://www.kcl.ac.uk/kis/support/cc/fortran/f90home.html#1.0 Fortran 90 Home Page at King's College, London]
* [http://www.cs.rpi.edu/~szymansk/oof90.html Object Oriented Fortran 90 Programming]
* [http://www.cs.rpi.edu/~szymansk/oof90.html Object Oriented Fortran 90 Programming]
</td>
|<!-- Perl -->
 
<!-- Perl: Links  -->
<td width="50%" valign="top">
* [http://www.perl.com Perl.com]
* [http://www.perl.com Perl.com]
* [http://www.perl.org/books/beginning-perl/ ''Beginning Perl'' by Simon Cozens (free online book)]
* [http://www.perl.org/books/beginning-perl/ ''Beginning Perl'' by Simon Cozens (free online book)]
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* [http://www.enginsite.com/Library-Robert%27s-Perl-Tutorial.htm MediaWiki User's Guide]
* [http://www.enginsite.com/Library-Robert%27s-Perl-Tutorial.htm MediaWiki User's Guide]
* [http://www.cpan.org/ Comprehensive Perl Archive Network (CPAN.org)]
* [http://www.cpan.org/ Comprehensive Perl Archive Network (CPAN.org)]
</td>


</tr>
|-valign="top" bgcolor="#CCCCCC"
!width="500px"|<big>R</big>
!width="500px"|<big>Python</big>


<!-- Header title -->
|-valign="top"
<tr bgcolor="#cccccc">
|<!-- R -->
<th width="50%"scope="col"><big>R</big></th>
<th width="50%"scope="col"><big>Python</big></th>
</tr>
 
<tr>
 
<!-- R: links -->
<td width="50%" valign="top">
*[http://www.r-project.org/ The R project for statistical computing]
*[http://www.r-project.org/ The R project for statistical computing]
*[http://journal.r-project.org/ The R journal]
*[http://journal.r-project.org/ The R journal]
*[http://www.mayin.org/ajayshah/KB/R/index.html R by example]
*[http://www.mayin.org/ajayshah/KB/R/index.html R by example]
*[[Using R to analyze GEOS-Chem data]]
*[[Using R to analyze GEOS-Chem data]]
</td>
|<!-- Python -->
 
<!-- Python: links -->
<td width="50%" valign="top">
*[[Python code for GEOS-Chem]]
*[[Python code for GEOS-Chem]]
*[http://www.python.org Python.org]: Main site for all things Python
*[http://www.python.org Python.org]: Main site for all things Python
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*[http://wiki.python.org/moin/BeginnersGuide/Programmers PythonWiki.org: List of tutorials and resources]
*[http://wiki.python.org/moin/BeginnersGuide/Programmers PythonWiki.org: List of tutorials and resources]
*[https://developers.google.com/edu/python/ Google's Python tutorial]
*[https://developers.google.com/edu/python/ Google's Python tutorial]
</td>


</tr>
|-valign="top" bgcolor="#CCCCCC"
!width="500px"|<big>NCAR Command Language (NCL)</big>
!width="500px"|<big>Wiki documentation</big>


<!-- Header title -->
|-valign="top"
<tr bgcolor="#cccccc">
|<!-- MCL -->
<th width="50%"scope="col"><big>NCAR Command Language (NCL)</big></th>
<th width="50%"scope="col"><big>Wiki Documentation</big></th>
</tr>
 
<tr>
 
<!-- Wiki Documentation: Links -->
<td width="50%" valign="top">
* [http://www.ncl.ucar.edu/ NCL main page]
* [http://www.ncl.ucar.edu/ NCL main page]
* [http://www.ncl.ucar.edu/Applications/ NCL applications]
* [http://www.ncl.ucar.edu/Applications/ NCL applications]
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* [http://www.ncl.ucar.edu/Support/email_lists.shtml Sign up for NCL-Talk email list]
* [http://www.ncl.ucar.edu/Support/email_lists.shtml Sign up for NCL-Talk email list]
* [[NCL_tools_for_GEOS-Chem|NCL4GC: NCL tools for GEOS-Chem]]
* [[NCL_tools_for_GEOS-Chem|NCL4GC: NCL tools for GEOS-Chem]]
</td>
|<!-- Wiki doc -->
<td width="50%" valign="top">
* [[Sandbox]]
* [[Sandbox]]
* [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
* [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
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* [http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration Settings list]
* [http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration Settings list]
* [http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
</td>
|}
 
</tr>
 
</table>

Revision as of 18:21, 4 November 2016

feel free to experiment here

GEOS&#150;Chem Wiki

The GEOS–Chem model is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the NASA Global Modeling and Assimilation Office. It is applied by research groups around the world to a wide range of atmospheric composition problems, Central management and support of the model is provided by the Atmospheric Chemistry Modeling Group at Harvard University.

This wiki is meant to facilitate communication between GEOS-Chem users and developers. If this is your first time here, check out the features page. If you would like to contribute to the wiki, please register as a user by clicking create account at the top right corner of this page.

New information is continually being added to the wiki, so please check back here often, or even better, subscribe to the recent changes' RSS feed: you will not miss a discussion!

Getting started w/ GEOS-Chem: Welcome letter for new users GEOS-Chem basics
Current public release: GEOS-Chem v10-01 v10-01 benchmark history
Version in development: GEOS-Chem v11-01 v11-01 benchmark history
Version for high-performance
computing (HPC) environments: 		GEOS-Chem HP GEOS-Chem HP Dev Kit
List of publications: Refer to this page


General information about GEOS-Chem

Introduction and overview Steering Committee and working groups
Getting started with GEOS-Chem General technical information


GEOS-Chem Code Developers' Forums

Coding Diagnostics
Emissions Chemistry
Dynamics Deposition
Aerosols Met fields
Nested grid simulations Earth System Modeling Framework
Benchmarking and Evaluation Related projects


Reference Section

IDL GAMAP
Fortran Perl
R Python
NCAR Command Language (NCL) Wiki documentation
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