Difference between revisions of "GEOS-Chem v11-02 benchmark history"

From Geos-chem
Jump to: navigation, search
(→‎v11-02a)
(→‎v11-02a)
Line 139: Line 139:
 
|Performance statistics:
 
|Performance statistics:
 
|
 
|
−
*Ran on TBD
+
*Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50 GHz)
−
*Wall time: TBD
+
*Wall time: 04:22:54
−
*[[Scalability|CPU time / wall time]]: TBD
+
*[[Scalability|CPU time / wall time]]: 22.5896
−
*% of ideal performance: TBD
+
*% of ideal performance: 94.12%
−
*Memory: TBD
+
*Memory: 5.2038 GB
 
|-
 
|-
 
|Compared to previous benchmark:
 
|Compared to previous benchmark:
Line 152: Line 152:
 
|-
 
|-
 
|[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at:
 
|[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at:
−
|TBD
+
|http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02a/v11-02a.results.html
 
|-
 
|-
 
|Plots may be viewed at:
 
|Plots may be viewed at:
−
|TBD
+
|http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02a/
 
|-bgcolor="#cccccc"
 
|-bgcolor="#cccccc"
 
!Metrics
 
!Metrics
Line 161: Line 161:
 
|-
 
|-
 
|Global mean OH (from log file):
 
|Global mean OH (from log file):
−
|TBD x 10<sup>5</sup> molec/cm<sup>3</sup>
+
|12.3128108012973 x 10<sup>5</sup> molec/cm<sup>3</sup>
 
|-
 
|-
 
|Methyl chloroform lifetime:
 
|Methyl chloroform lifetime:
−
|TBD years
+
|5.1159 years
 
|-
 
|-
 
|Did either of these change by more than 5%?
 
|Did either of these change by more than 5%?
−
|TBD
+
|No. Mean OH changed by -2.57% and MCF lifetime changed by 2.94%.
 
|-
 
|-
 
|At the SURFACE, list all species that changed by 10% or more:
 
|At the SURFACE, list all species that changed by 10% or more:
−
|
+
|NO, O3, PAN, CO, ALK4, ISOP, HNO3, H2O2, ACET, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, R4N2, PRPE, C3H8, CH2O, C2H6, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, MSA, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, CHBr3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG2, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASO3G3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2
 
|-
 
|-
 
|Comments on SURFACE differences:
 
|Comments on SURFACE differences:
Line 177: Line 177:
 
|-
 
|-
 
|At 500 hPa, list all species that changed by 10% or more:
 
|At 500 hPa, list all species that changed by 10% or more:
−
|
+
|NO, PAN, CO, ALK4, ISOP, HNO3, H2O2, ACET, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, R4N2, PRPE, C3H8, CH2O, C2H6, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, MSA, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, CHBr3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG2, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASO3G3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2
 
|-
 
|-
 
|Comments on 500 hPa differences:
 
|Comments on 500 hPa differences:
Line 184: Line 184:
 
|-
 
|-
 
|In the ZONAL MEAN differences, list all species that changed by 10% or more:
 
|In the ZONAL MEAN differences, list all species that changed by 10% or more:
−
|
+
|NO, PAN, ALK4, ISOP, HNO3, H2O2, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, PRPE, C3H8, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, CHBr3, MPN, ISOPND, ISOPNB, MOBA, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG3, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASOG3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2
 
|-
 
|-
 
|Comments on ZONAL MEAN differences:
 
|Comments on ZONAL MEAN differences:
Line 192: Line 192:
 
|In the EMISSION RATIO maps, list all species that changed by 10% or more:
 
|In the EMISSION RATIO maps, list all species that changed by 10% or more:
 
|
 
|
 +
*Anthropogenic: ALD2, ALK4, BC, C2H6, C3H8, CH2O, CO, MEK, NH3, NO, OC, PRPE, SO2, SO4
 +
*Biomass: ACET, ALD2, ALK4, BC, C2H6, C3H8, CH2O, CO, MEK, NH3, NO, OC, PRPE, SO2
 +
*Biogenic: ALD2, ISOP, PRPE
 +
*CO from MONOT
 +
*NO fertilizer and soil
 
|-
 
|-
 
|Comments on EMISSION RATIO differences:
 
|Comments on EMISSION RATIO differences:
 
|
 
|
−
*
+
*Anthropogenic emissions over US change slightly because of the change from hourly NEI2011 emissions to [[EPA/NEI11_North_American_emissions#Monthly_mean_emissions|monthly mean NEI2011 emissions]].
 +
*ACET ocean source decreases slightly from the [[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|fix for acetone parameterization in <tt>hcox_seaflux_mod.F90</tt>]]
 
|-
 
|-
 
|Additional or summary comments:
 
|Additional or summary comments:

Revision as of 17:38, 19 April 2017

On this page we have posted complete information about all benchmark simulations (both 1-month and 1-year) for GEOS-Chem v11-02.

1-year full-chemistry benchmarks

TBD

1-month benchmarks

v11-02a

Here is the assessment form for 1-month benchmark simulation v11-02a.

Description
Features affecting the full-chemistry simulation in this benchmark:
Feature Submitted by
Update chemistry rate constants based on JPL Publication 15-10 Barron Henderson (US EPA),
Mat Evans (U. York), &
Oxidants and Chemistry WG
Fixes to correct ALK4 lumping issue Barron Henderson (US EPA)
PAN updates Emily Fischer (CSU)
Monthly mean NEI2011 emissions GCST &
Katie Travis (Harvard)
Bug fixes in the GEOS-Chem sulfate module:
Prasad Kasibhatla (Duke)
Prasad Kasibhatla (Duke)
Qianjie Chen (UW)
Viral Shah (UW)
Fix bug in dry deposition aerodynamic resistance Brian Boys (Dalhousie)
Fix acetone parameterization in hcox_seaflux_mod.F90 GCST
Bug fix in cos(SZA) for start of timestep Lizzie Lundgren (GCST)
Bug fixes for diagnostics:
Aaron van Donkelaar (Dalhousie)
Jenny Fisher (U. Wollongong)
GCST
GCST
Jenny Fisher (U. Wollongong)
Chris Holmes (Florida State)
Include TOA pressure when calculating dry pressure edges Seb Eastham (Harvard)
Features not affecting the full-chemistry simulation in this benchmark:
Feature Submitted by
Implement ISORROPIA v2.0 as a Fortran module Seb Eastham (Harvard)
GCST
Updates to the HEMCO emissions component:
Christoph Keller (NASA GMAO)
Seb Eastham (Harvard)
Jessica Morena (Dalhousie)
Brian Boys (Dalhousie) & GCST
Updates to gain computational speedup:
Mike Long (Harvard)
Bob Yantosca (GCST)
Fixed typo in routineINIT_WINDOW Bob Yantosca (GCST)
netCDF file I/O updates:
Chris Holmes (Florida State)
Andy Jacobson (NOAA)
GCST
Makefile and build sequence updates:
Jiawei Zhang (Harvard)
GCST
Bug fixes for running UCX in ESMF environment Christoph Keller (NASA GMAO)
Removal of obsolete variables: GCST
Version, resolution, met fields used: v11-02, GEOS-FP (72L), 4x5, July 2013
1-month benchmark finished on: TBD
Performance statistics:
  • Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50 GHz)
  • Wall time: 04:22:54
  • CPU time / wall time: 22.5896
  • % of ideal performance: 94.12%
  • Memory: 5.2038 GB
Compared to previous benchmark: v11-01 public release
This update will impact:
(select all that apply with boldface) 		Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify):
Unit test results may be viewed at: http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02a/v11-02a.results.html
Plots may be viewed at: http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02a/
Metrics
Global mean OH (from log file): 12.3128108012973 x 105 molec/cm3
Methyl chloroform lifetime: 5.1159 years
Did either of these change by more than 5%? No. Mean OH changed by -2.57% and MCF lifetime changed by 2.94%.
At the SURFACE, list all species that changed by 10% or more: NO, O3, PAN, CO, ALK4, ISOP, HNO3, H2O2, ACET, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, R4N2, PRPE, C3H8, CH2O, C2H6, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, MSA, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, CHBr3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG2, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASO3G3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2
Comments on SURFACE differences:
At 500 hPa, list all species that changed by 10% or more: NO, PAN, CO, ALK4, ISOP, HNO3, H2O2, ACET, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, R4N2, PRPE, C3H8, CH2O, C2H6, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, MSA, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, CHBr3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG2, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASO3G3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2
Comments on 500 hPa differences:
In the ZONAL MEAN differences, list all species that changed by 10% or more: NO, PAN, ALK4, ISOP, HNO3, H2O2, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, PRPE, C3H8, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, CHBr3, MPN, ISOPND, ISOPNB, MOBA, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG3, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASOG3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2
Comments on ZONAL MEAN differences:
In the EMISSION RATIO maps, list all species that changed by 10% or more:
  • Anthropogenic: ALD2, ALK4, BC, C2H6, C3H8, CH2O, CO, MEK, NH3, NO, OC, PRPE, SO2, SO4
  • Biomass: ACET, ALD2, ALK4, BC, C2H6, C3H8, CH2O, CO, MEK, NH3, NO, OC, PRPE, SO2
  • Biogenic: ALD2, ISOP, PRPE
  • CO from MONOT
  • NO fertilizer and soil
Comments on EMISSION RATIO differences:
Additional or summary comments:
Approval
Requires further investigation: TBD
Approved by: TBD
Date of approval: TBD

--Melissa Sulprizio (talk) 18:46, 14 April 2017 (UTC)

1-year Rn-Pb-Be benchmarks

TBD

Retrieved from "https://wiki.seas.harvard.edu/geos-chem/index.php?title=GEOS-Chem_v11-02_benchmark_history&oldid=31731"