Difference between revisions of "GEOS-Chem v11-02 benchmark history"

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(→‎v11-02a)
(→‎v11-02a)
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|-valign="top"
 
|-valign="top"
−
|[[Updates_in_JPL_Publication_15-10|Updating chemistry rate constants based on ''JPL Publication 15-10'']]
+
|[[Updates_in_JPL_Publication_15-10|Update chemistry rate constants based on ''JPL Publication 15-10'']]
 
|Barron Henderson (US EPA),<br>Mat Evans (U. York), &<br>[[Chemistry Issues|Oxidants and Chemistry WG]]
 
|Barron Henderson (US EPA),<br>Mat Evans (U. York), &<br>[[Chemistry Issues|Oxidants and Chemistry WG]]
  
Line 41: Line 41:
 
|-valign="top"
 
|-valign="top"
 
|Bug fixes in the GEOS-Chem sulfate module:
 
|Bug fixes in the GEOS-Chem sulfate module:
−
*[[Sulfate_aerosols#Fix_error_in_production_of_SO4s.2C_NITs_in_SEASALT_CHEM_routine|Fix error in production of SO4s and NITs in SEASALT_CHEM routine]]
+
*[[Sulfate_aerosols#Fix_error_in_production_of_SO4s.2C_NITs_in_SEASALT_CHEM_routine|Fix bug in <tt>SEASALT_CHEM</tt>]]
−
*[[Sulfate_aerosols#Fix_bug_in_CHEM_NIT_routine|Fix bug in CHEM_NIT routine]]
+
*[[Sulfate_aerosols#Fix_bug_in_CHEM_NIT_routine|Fix bug in <tt>CHEM_NIT</tt>]]
−
*[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|Fix for sulfate production in HET_DROP_CHEM]]
+
*[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|Fix for sulfate production in <tt>HET_DROP_CHEM</tt>]]
 
*[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|Fix bugs in sulfate chemistry routines]]
 
*[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|Fix bugs in sulfate chemistry routines]]
 
|<br>Prasad Kasibhatla (Duke)<br>Prasad Kasibhatla (Duke)<br>Qianjie Chen (UW)<br>Viral Shah (UW)
 
|<br>Prasad Kasibhatla (Duke)<br>Prasad Kasibhatla (Duke)<br>Qianjie Chen (UW)<br>Viral Shah (UW)
  
 
|-valign="top"
 
|-valign="top"
−
|[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|Fix bug in computation of dry deposition aerodynamic resistance Ra]]
+
|[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|Fix bug in dry deposition aerodynamic resistance]]
 
|Brian Boys (Dalhousie)
 
|Brian Boys (Dalhousie)
  
 
|-valign="top"
 
|-valign="top"
−
|[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|Fix acetone parameterization in hcox_seaflux_mod.F90]]
+
|[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|Fix acetone parameterization in <tt>hcox_seaflux_mod.F90</tt>]]
 
|[[GCST]]
 
|[[GCST]]
  
Line 62: Line 62:
 
|Bug fixes for diagnostics:
 
|Bug fixes for diagnostics:
 
*[[Particulate_matter_in_GEOS-Chem#Save_out_PM2.5_diagnostic_at_STP_conditions|Save out PM2.5 diagnostic at STP conditions]]
 
*[[Particulate_matter_in_GEOS-Chem#Save_out_PM2.5_diagnostic_at_STP_conditions|Save out PM2.5 diagnostic at STP conditions]]
−
*[[GEOS-Chem_v11-01#Bugs_in_convective_flux_diagnostics_.28ND14.29|Bug fixes in convective mass flux diagnostic (ND14)]]
+
*[[GEOS-Chem_v11-01#Bugs_in_convective_flux_diagnostics_.28ND14.29|Bug fixes in convective mass flux diagnostic]]
 
*[[GEOS-Chem_v11-01#P.28OH.29_not_saved_out_in_ND22_diagnostic|Restore P(OH) in ND22 diagnostic]]
 
*[[GEOS-Chem_v11-01#P.28OH.29_not_saved_out_in_ND22_diagnostic|Restore P(OH) in ND22 diagnostic]]
 
*[[Implementation_of_HEMCO_in_GEOS-Chem#Make_anthropogenic_emissions_diagnostics_3D|Make anthropogenic emissions diagnostics 3D]]
 
*[[Implementation_of_HEMCO_in_GEOS-Chem#Make_anthropogenic_emissions_diagnostics_3D|Make anthropogenic emissions diagnostics 3D]]
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|-valign="top"
 
|-valign="top"
−
|[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]]
+
|[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|Implement ISORROPIA v2.0 as a Fortran module]]
 
|Seb Eastham (Harvard)<br>[[GCST]]
 
|Seb Eastham (Harvard)<br>[[GCST]]
  
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|Updates to the HEMCO emissions component:
 
|Updates to the HEMCO emissions component:
 
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02a|Update to HEMCO v2.0.004]]
 
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02a|Update to HEMCO v2.0.004]]
−
*[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_computation_of_local_time_in_HCO_GetSuncos|Fixed bug in computation of local time in the HEMCO routine <tt>HCO_GetSuncos</tt>]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_computation_of_local_time_in_HCO_GetSuncos|Fixed bug in computation of local time in <tt>HCO_GetSuncos</tt>]]
 
*[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|Default US emissions to NEI2011 after 2013]]
 
*[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|Default US emissions to NEI2011 after 2013]]
−
*[[Implementation_of_HEMCO_in_GEOS-Chem#Read_default_DEP_RESERVOIR_fields_from_file_when_not_found_in_HEMCO_restart_file|Read default DEP_RESERVOIR fields from file when not found in HEMCO restart file]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Read_default_DEP_RESERVOIR_fields_from_file_when_not_found_in_HEMCO_restart_file|Read default <tt>DEP_RESERVOIR</tt> fields from file]]
 
|<br>Christoph Keller (NASA GMAO)<br>Seb Eastham (Harvard)<br>Jessica Morena (Dalhousie)<br>Brian Boys (Dalhousie) & [[GCST]]
 
|<br>Christoph Keller (NASA GMAO)<br>Seb Eastham (Harvard)<br>Jessica Morena (Dalhousie)<br>Brian Boys (Dalhousie) & [[GCST]]
  
 
|-valign="top"
 
|-valign="top"
 
|Updates to gain computational speedup:
 
|Updates to gain computational speedup:
−
*[[FlexChem#In_GEOS-Chem_v11-02_and_later_versions|Add simplified prod/loss families to KPP to gain computational speedup]]
+
*[[FlexChem#In_GEOS-Chem_v11-02_and_later_versions|Add simplified prod/loss families to KPP]]
 
*[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|Remove computational bottleneck in the convection module]]
 
*[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|Remove computational bottleneck in the convection module]]
 
|<br>Mike Long (Harvard)<br>Bob Yantosca ([[GCST]])
 
|<br>Mike Long (Harvard)<br>Bob Yantosca ([[GCST]])
  
 
|-valign="top"
 
|-valign="top"
−
|[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|Fixed typo in nested-grid transport routine <tt>INIT_WINDOW</tt>]]
+
|[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|Fixed typo in routine<tt>INIT_WINDOW</tt>]]
 
|Bob Yantosca ([[GCST]])
 
|Bob Yantosca ([[GCST]])
  
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*[[The NcdfUtilities package#Enable_compression_in_netCDF-4_output_files|Enable data compression in netCDF-4 output files]]
 
*[[The NcdfUtilities package#Enable_compression_in_netCDF-4_output_files|Enable data compression in netCDF-4 output files]]
 
*[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]]
 
*[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]]
−
*[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|HEMCO diagnostic and restart files now have an unlimited time dimension]]
+
*[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|HEMCO files now have an unlimited time dimension]]
 
|<br>Chris Holmes (Florida State)<br>Andy Jacobson (NOAA)<br>[[GCST]]
 
|<br>Chris Holmes (Florida State)<br>Andy Jacobson (NOAA)<br>[[GCST]]
  
 
|-valign="top"
 
|-valign="top"
 
|Makefile and build sequence updates:
 
|Makefile and build sequence updates:
−
*[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|Bug fix: Specifing <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]]
+
*[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|Specifying <tt>NO_REDUCED=no</tt> now compiles for reduced grids]]
−
*[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> for a cleaner build sequence]]
+
*[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> ]]
 
|<br>Jiawei Zhang (Harvard)<br>[[GCST]]
 
|<br>Jiawei Zhang (Harvard)<br>[[GCST]]
  
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|Removal of obsolete variables:
 
|Removal of obsolete variables:
 
*[[#Removed_the_NNPAR_parameter_from_CMN_SIZE_mod.F|Removed the <tt>NNPAR</tt> parameter from <tt>CMN_SIZE_mod.F</tt>]]
 
*[[#Removed_the_NNPAR_parameter_from_CMN_SIZE_mod.F|Removed the <tt>NNPAR</tt> parameter from <tt>CMN_SIZE_mod.F</tt>]]
−
*[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt> in the wetdep module]]
+
*[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt>]]
 
*[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|Removed obsolete fields of the <tt>Input_Opt</tt> object]]
 
*[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|Removed obsolete fields of the <tt>Input_Opt</tt> object]]
 
|[[GCST]]
 
|[[GCST]]

Revision as of 22:44, 18 April 2017

On this page we have posted complete information about all benchmark simulations (both 1-month and 1-year) for GEOS-Chem v11-02.

1-year full-chemistry benchmarks

TBD

1-month benchmarks

v11-02a

Here is the assessment form for 1-month benchmark simulation v11-02a.

Description
Features affecting the full-chemistry simulation in this benchmark:
Feature Submitted by
Update chemistry rate constants based on JPL Publication 15-10 Barron Henderson (US EPA),
Mat Evans (U. York), &
Oxidants and Chemistry WG
Fixes to correct ALK4 lumping issue Barron Henderson (US EPA)
PAN updates Emily Fischer (CSU)
Monthly mean NEI2011 emissions GCST &
Katie Travis (Harvard)
Bug fixes in the GEOS-Chem sulfate module:
Prasad Kasibhatla (Duke)
Prasad Kasibhatla (Duke)
Qianjie Chen (UW)
Viral Shah (UW)
Fix bug in dry deposition aerodynamic resistance Brian Boys (Dalhousie)
Fix acetone parameterization in hcox_seaflux_mod.F90 GCST
Bug fix in cos(SZA) for start of timestep Lizzie Lundgren (GCST)
Bug fixes for diagnostics:
Aaron van Donkelaar (Dalhousie)
Jenny Fisher (U. Wollongong)
GCST
GCST
Jenny Fisher (U. Wollongong)
Chris Holmes (Florida State)
Include TOA pressure when calculating dry pressure edges Seb Eastham (Harvard)
Features not affecting the full-chemistry simulation in this benchmark:
Feature Submitted by
Implement ISORROPIA v2.0 as a Fortran module Seb Eastham (Harvard)
GCST
Updates to the HEMCO emissions component:
Christoph Keller (NASA GMAO)
Seb Eastham (Harvard)
Jessica Morena (Dalhousie)
Brian Boys (Dalhousie) & GCST
Updates to gain computational speedup:
Mike Long (Harvard)
Bob Yantosca (GCST)
Fixed typo in routineINIT_WINDOW Bob Yantosca (GCST)
netCDF file I/O updates:
Chris Holmes (Florida State)
Andy Jacobson (NOAA)
GCST
Makefile and build sequence updates:
Jiawei Zhang (Harvard)
GCST
Bug fixes for running UCX in ESMF environment Christoph Keller (NASA GMAO)
Removal of obsolete variables: GCST
Version, resolution, met fields used: v11-02, GEOS-FP (72L), 4x5, July 2013
1-month benchmark finished on: TBD
Performance statistics:
Compared to previous benchmark: v11-01 public release
This update will impact:
(select all that apply with boldface) 		Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify):
Unit test results may be viewed at: TBD
Plots may be viewed at: TBD
Metrics
Global mean OH (from log file): TBD x 105 molec/cm3
Methyl chloroform lifetime: TBD years
Did either of these change by more than 5%? TBD
At the SURFACE, list all species that changed by 10% or more:
Comments on SURFACE differences:
At 500 hPa, list all species that changed by 10% or more:
Comments on 500 hPa differences:
In the ZONAL MEAN differences, list all species that changed by 10% or more:
Comments on ZONAL MEAN differences:
In the EMISSION RATIO maps, list all species that changed by 10% or more:
Comments on EMISSION RATIO differences:
Additional or summary comments:
Approval
Requires further investigation: TBD
Approved by: TBD
Date of approval: TBD

--Melissa Sulprizio (talk) 18:46, 14 April 2017 (UTC)

1-year Rn-Pb-Be benchmarks

TBD

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