Difference between revisions of "GEOS-Chem v11-02 benchmark history"

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!  
 
!  
 
|-
 
|-
−
|New features added into GEOS-Chem:
+
|Features affecting the full-chemistry simulation in this benchmark:
 
|
 
|
−
Features affecting the full-chemistry simulation in this benchmark:
+
{| border=1 cellspacing=0 cellpadding=5
−
 
+
|-
−
{| border=1 cellspacing=0 cellpadding=5  
+
−
|-bgcolor="#CCCCCC"
+
 
!width="500px"|Feature
 
!width="500px"|Feature
−
!width="80px"|Type
 
 
!width="200px"|Submitted by
 
!width="200px"|Submitted by
  
 
|-valign="top"
 
|-valign="top"
 
|[[Updates_in_JPL_Publication_15-10|Updating chemistry rate constants based on ''JPL Publication 15-10'']]
 
|[[Updates_in_JPL_Publication_15-10|Updating chemistry rate constants based on ''JPL Publication 15-10'']]
−
|Science
+
|Barron Henderson (US EPA),<br>Mat Evans (U. York) &<br>[[Chemistry Issues|Oxidants and Chemistry WG]]
−
|Barron Henderson (US EPA)<br>Mat Evans (U. York)<br>[[Chemistry Issues|Oxidants and Chemistry WG]]
+
  
 
|-valign="top"
 
|-valign="top"
 
|[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|Fixes to correct ALK4 lumping issue]]
 
|[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|Fixes to correct ALK4 lumping issue]]
−
|Science
 
 
|Barron Henderson (US EPA)
 
|Barron Henderson (US EPA)
  
 
|-valign="top"
 
|-valign="top"
 
|[[PAN|PAN updates]]
 
|[[PAN|PAN updates]]
−
|Science
 
 
|Emily Fischer (CSU)
 
|Emily Fischer (CSU)
  
 
|-valign="top"
 
|-valign="top"
 
|[[EPA/NEI11_North_American_emissions#Monthly_mean_emissions|Monthly mean NEI2011 emissions]]
 
|[[EPA/NEI11_North_American_emissions#Monthly_mean_emissions|Monthly mean NEI2011 emissions]]
−
|Science
+
|[[GCST]] &<br>Katie Travis (Harvard)
−
|[[GCST]]<br>Katie Travis (Harvard)
+
  
 
|-valign="top"
 
|-valign="top"
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*[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|Fix for sulfate production in HET_DROP_CHEM]]
 
*[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|Fix for sulfate production in HET_DROP_CHEM]]
 
*[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|Fix bugs in sulfate chemistry routines]]
 
*[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|Fix bugs in sulfate chemistry routines]]
−
|Bug fix
+
|<br>Prasad Kasibhatla (Duke)<br>Prasad Kasibhatla (Duke)<br>Qianjie Chen (UW)<br>Viral Shah (UW)
−
|Prasad Kasibhatla (Duke)<br>Qianjie Chen (UW)<br>Viral Shah (UW)
+
  
 
|-valign="top"
 
|-valign="top"
 
|[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|Fix bug in computation of dry deposition aerodynamic resistance Ra]]
 
|[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|Fix bug in computation of dry deposition aerodynamic resistance Ra]]
−
|Bug fix
 
 
|Brian Boys (Dalhousie)
 
|Brian Boys (Dalhousie)
  
 
|-valign="top"
 
|-valign="top"
 
|[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|Fix acetone parameterization in hcox_seaflux_mod.F90]]
 
|[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|Fix acetone parameterization in hcox_seaflux_mod.F90]]
−
|Bug fix
 
 
|[[GCST]]
 
|[[GCST]]
  
 
|-valign="top"
 
|-valign="top"
 
|[[GEOS-Chem_v11-01#Bug_in_cos.28SZA.29_for_start_of_timestep|Bug fix in cos(SZA) for start of timestep]]
 
|[[GEOS-Chem_v11-01#Bug_in_cos.28SZA.29_for_start_of_timestep|Bug fix in cos(SZA) for start of timestep]]
−
|Bug fix
 
 
|Lizzie Lundgren ([[GCST]])
 
|Lizzie Lundgren ([[GCST]])
  
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*[[Tagged_CO_simulation#Fix_ND65_bugs_in_tagged_CO_simulation|Fix ND65 bugs in tagged CO simulation]]
 
*[[Tagged_CO_simulation#Fix_ND65_bugs_in_tagged_CO_simulation|Fix ND65 bugs in tagged CO simulation]]
 
*[[Mineral_dust_aerosols#Bug_in_ND21_diagnostic_indexing_for_size-resolved_dust_species|Fix bug in ND21 diagnostic indexing for dust species]]
 
*[[Mineral_dust_aerosols#Bug_in_ND21_diagnostic_indexing_for_size-resolved_dust_species|Fix bug in ND21 diagnostic indexing for dust species]]
−
|Bug fix
+
|<br>Aaron van Donkelaar (Dalhousie)<br>Jenny Fisher (U. Wollongong)<br>[[GCST]]<br>[[GCST]]<br>Jenny Fisher (U. Wollongong)<br>Chris Holmes (Florida State)
−
|Aaron van Donkelaar (Dalhousie)<br>Jenny Fisher (U. Wollongong)<br>[[GCST]]<br>Chris Holmes (Florida State)
+
  
 
|-valign="top"
 
|-valign="top"
 
|[[GEOS-Chem_v11-02#Include_TOA_pressure_when_calculating_dry_pressure_edges|Include TOA pressure when calculating dry pressure edges]]
 
|[[GEOS-Chem_v11-02#Include_TOA_pressure_when_calculating_dry_pressure_edges|Include TOA pressure when calculating dry pressure edges]]
−
|Science
 
 
|Seb Eastham (Harvard)
 
|Seb Eastham (Harvard)
  
 
|}
 
|}
−
 
+
|-
−
 
+
|Features not affecting the full-chemistry simulation in this benchmark:
−
Features not affecting the full-chemistry simulation in this benchmark:
+
|
−
 
+
 
{| border=1 cellspacing=0 cellpadding=5  
 
{| border=1 cellspacing=0 cellpadding=5  
−
|-bgcolor="#CCCCCC"
+
|-
 
!width="500px"|Feature
 
!width="500px"|Feature
−
!width="80px"|Type
 
 
!width="200px"|Submitted by
 
!width="200px"|Submitted by
  
 
|-valign="top"
 
|-valign="top"
 
|[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]]
 
|[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]]
−
|Structural
 
 
|Seb Eastham (Harvard)<br>[[GCST]]
 
|Seb Eastham (Harvard)<br>[[GCST]]
  
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*[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|Default US emissions to NEI2011 after 2013]]
 
*[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|Default US emissions to NEI2011 after 2013]]
 
*[[Implementation_of_HEMCO_in_GEOS-Chem#Read_default_DEP_RESERVOIR_fields_from_file_when_not_found_in_HEMCO_restart_file|Read default DEP_RESERVOIR fields from file when not found in HEMCO restart file]]
 
*[[Implementation_of_HEMCO_in_GEOS-Chem#Read_default_DEP_RESERVOIR_fields_from_file_when_not_found_in_HEMCO_restart_file|Read default DEP_RESERVOIR fields from file when not found in HEMCO restart file]]
−
|Structural<br>& Bug fix
+
|<br>Christoph Keller (NASA GMAO)<br>Seb Eastham (Harvard)<br>Jessica Morena (Dalhousie)<br>Brian Boys (Dalhousie) & [[GCST]]
−
|Christoph Keller (NASA GMAO)<br>Seb Eastham (Harvard)<br>Jessica Morena (Dalhousie)<br>[[GCST]]<br>Brian Boys (Dalhousie)
+
  
 
|-valign="top"
 
|-valign="top"
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*[[FlexChem#In_GEOS-Chem_v11-02_and_later_versions|Add simplified prod/loss families to KPP to gain computational speedup]]
 
*[[FlexChem#In_GEOS-Chem_v11-02_and_later_versions|Add simplified prod/loss families to KPP to gain computational speedup]]
 
*[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|Remove computational bottleneck in the convection module]]
 
*[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|Remove computational bottleneck in the convection module]]
−
|Structural<br>& Bug fix
+
|<br>Mike Long (Harvard)<br>Bob Yantosca ([[GCST]])
−
|Mike Long (Harvard)<br>Bob Yantosca ([[GCST]])
+
  
 
|-valign="top"
 
|-valign="top"
 
|[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|Fixed typo in nested-grid transport routine <tt>INIT_WINDOW</tt>]]
 
|[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|Fixed typo in nested-grid transport routine <tt>INIT_WINDOW</tt>]]
−
|Bug fix
 
 
|Bob Yantosca ([[GCST]])
 
|Bob Yantosca ([[GCST]])
  
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*[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]]
 
*[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]]
 
*[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|HEMCO diagnostic and restart files now have an unlimited time dimension]]
 
*[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|HEMCO diagnostic and restart files now have an unlimited time dimension]]
−
|Bug fix &<br>Structural
+
|<br>Chris Holmes (Florida State)<br>Andy Jacobson (NOAA)<br>[[GCST]]
−
|Chris Holmes (Florida State)<br>Andy Jacobson (NOAA)<br>[[GCST]]
+
  
 
|-valign="top"
 
|-valign="top"
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*[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|Bug fix: Specifing <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]]
 
*[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|Bug fix: Specifing <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]]
 
*[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> for a cleaner build sequence]]
 
*[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> for a cleaner build sequence]]
−
|Bug fix &<br>Structural
+
|<br>Jiawei Zhang (Harvard)<br>[[GCST]]
−
|Jiawei Zhang (Harvard)<br>[[GCST]]
+
  
 
|-valign="top"
 
|-valign="top"
 
|[[UCX_chemistry_mechanism#Bug_fixes_for_running_UCX_in_ESMF_environment|Bug fixes for running UCX in ESMF environment]]
 
|[[UCX_chemistry_mechanism#Bug_fixes_for_running_UCX_in_ESMF_environment|Bug fixes for running UCX in ESMF environment]]
−
|Bug fix
 
 
|Christoph Keller (NASA GMAO)
 
|Christoph Keller (NASA GMAO)
  
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*[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt> in the wetdep module]]
 
*[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt> in the wetdep module]]
 
*[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|Removed obsolete fields of the <tt>Input_Opt</tt> object]]
 
*[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|Removed obsolete fields of the <tt>Input_Opt</tt> object]]
−
|Structural
 
 
|[[GCST]]
 
|[[GCST]]
  

Revision as of 22:37, 18 April 2017

On this page we have posted complete information about all benchmark simulations (both 1-month and 1-year) for GEOS-Chem v11-02.

1-year full-chemistry benchmarks

TBD

1-month benchmarks

v11-02a

Here is the assessment form for 1-month benchmark simulation v11-02a.

Description
Features affecting the full-chemistry simulation in this benchmark:
Feature Submitted by
Updating chemistry rate constants based on JPL Publication 15-10 Barron Henderson (US EPA),
Mat Evans (U. York) &
Oxidants and Chemistry WG
Fixes to correct ALK4 lumping issue Barron Henderson (US EPA)
PAN updates Emily Fischer (CSU)
Monthly mean NEI2011 emissions GCST &
Katie Travis (Harvard)
Bug fixes in the GEOS-Chem sulfate module:
Prasad Kasibhatla (Duke)
Prasad Kasibhatla (Duke)
Qianjie Chen (UW)
Viral Shah (UW)
Fix bug in computation of dry deposition aerodynamic resistance Ra Brian Boys (Dalhousie)
Fix acetone parameterization in hcox_seaflux_mod.F90 GCST
Bug fix in cos(SZA) for start of timestep Lizzie Lundgren (GCST)
Bug fixes for diagnostics:
Aaron van Donkelaar (Dalhousie)
Jenny Fisher (U. Wollongong)
GCST
GCST
Jenny Fisher (U. Wollongong)
Chris Holmes (Florida State)
Include TOA pressure when calculating dry pressure edges Seb Eastham (Harvard)
Features not affecting the full-chemistry simulation in this benchmark:
Feature Submitted by
Implement ISORROPIA v2.0 as a Fortran module (eliminating COMMON blocks) Seb Eastham (Harvard)
GCST
Updates to the HEMCO emissions component:
Christoph Keller (NASA GMAO)
Seb Eastham (Harvard)
Jessica Morena (Dalhousie)
Brian Boys (Dalhousie) & GCST
Updates to gain computational speedup:
Mike Long (Harvard)
Bob Yantosca (GCST)
Fixed typo in nested-grid transport routine INIT_WINDOW Bob Yantosca (GCST)
netCDF file I/O updates:
Chris Holmes (Florida State)
Andy Jacobson (NOAA)
GCST
Makefile and build sequence updates:
Jiawei Zhang (Harvard)
GCST
Bug fixes for running UCX in ESMF environment Christoph Keller (NASA GMAO)
Removal of obsolete variables: GCST
Version, resolution, met fields used: v11-02, GEOS-FP (72L), 4x5, July 2013
1-month benchmark finished on: TBD
Performance statistics:
Compared to previous benchmark: v11-01 public release
This update will impact:
(select all that apply with boldface) 		Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify):
Unit test results may be viewed at: TBD
Plots may be viewed at: TBD
Metrics
Global mean OH (from log file): TBD x 105 molec/cm3
Methyl chloroform lifetime: TBD years
Did either of these change by more than 5%? TBD
At the SURFACE, list all species that changed by 10% or more:
Comments on SURFACE differences:
At 500 hPa, list all species that changed by 10% or more:
Comments on 500 hPa differences:
In the ZONAL MEAN differences, list all species that changed by 10% or more:
Comments on ZONAL MEAN differences:
In the EMISSION RATIO maps, list all species that changed by 10% or more:
Comments on EMISSION RATIO differences:
Additional or summary comments:
Approval
Requires further investigation: TBD
Approved by: TBD
Date of approval: TBD

--Melissa Sulprizio (talk) 18:46, 14 April 2017 (UTC)

1-year Rn-Pb-Be benchmarks

TBD

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