Difference between revisions of "GEOS-Chem v11-02 benchmark history"

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|-bgcolor="#CCCCCC"
 
|-bgcolor="#CCCCCC"
 
!width="500px"|Feature
 
!width="500px"|Feature
 +
!width="80px"|Type
 
!width="200px"|Submitted by
 
!width="200px"|Submitted by
  
 
|-valign="top"
 
|-valign="top"
 
|[[Updates_in_JPL_Publication_15-10|Updating chemistry rate constants based on ''JPL Publication 15-10'']]
 
|[[Updates_in_JPL_Publication_15-10|Updating chemistry rate constants based on ''JPL Publication 15-10'']]
 +
|Science
 
|Barron Henderson (US EPA)<br>Mat Evans (U. York)<br>[[Chemistry Issues|Oxidants and Chemistry WG]]
 
|Barron Henderson (US EPA)<br>Mat Evans (U. York)<br>[[Chemistry Issues|Oxidants and Chemistry WG]]
  
 
|-valign="top"
 
|-valign="top"
 
|[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|Fixes to correct ALK4 lumping issue]]
 
|[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|Fixes to correct ALK4 lumping issue]]
 +
|Science
 
|Barron Henderson (US EPA)
 
|Barron Henderson (US EPA)
  
 
|-valign="top"
 
|-valign="top"
 
|[[PAN|PAN updates]]
 
|[[PAN|PAN updates]]
 +
|Science
 
|Emily Fischer (CSU)
 
|Emily Fischer (CSU)
  
 
|-valign="top"
 
|-valign="top"
 
|[[EPA/NEI11_North_American_emissions#Monthly_mean_emissions|Monthly mean NEI2011 emissions]]
 
|[[EPA/NEI11_North_American_emissions#Monthly_mean_emissions|Monthly mean NEI2011 emissions]]
 +
|Science
 
|[[GCST]]<br>Katie Travis (Harvard)
 
|[[GCST]]<br>Katie Travis (Harvard)
  
 +
|-valign="top"
 +
|Bug fixes in the GEOS-Chem sulfate module:
 +
*[[Sulfate_aerosols#Fix_error_in_production_of_SO4s.2C_NITs_in_SEASALT_CHEM_routine|Fix error in production of SO4s and NITs in SEASALT_CHEM routine]]
 +
*[[Sulfate_aerosols#Fix_bug_in_CHEM_NIT_routine|Fix bug in CHEM_NIT routine]]
 +
*[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|Fix for sulfate production in HET_DROP_CHEM]]
 +
*[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|Fix bugs in sulfate chemistry routines]]
 +
|Bug fix
 +
|Prasad Kasibhatla (Duke)<br>Qianjie Chen (UW)<br>Viral Shah (UW)
 +
 +
|-valign="top"
 +
|[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|Fix bug in computation of dry deposition aerodynamic resistance Ra]]
 +
|Bug fix
 +
|Brian Boys (Dalhousie)
 +
 +
|-valign="top"
 +
|[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|Fix acetone parameterization in hcox_seaflux_mod.F90]]
 +
|Bug fix
 +
|[[GCST]]
 +
 +
|-valign="top"
 +
|[[GEOS-Chem_v11-01#Bug_in_cos.28SZA.29_for_start_of_timestep|Bug fix in cos(SZA) for start of timestep]]
 +
|Bug fix
 +
|Lizzie Lundgren ([[GCST]])
 +
 +
|-valign="top"
 +
|Bug fixes for diagnostics:
 +
*[[Particulate_matter_in_GEOS-Chem#Save_out_PM2.5_diagnostic_at_STP_conditions|Save out PM2.5 diagnostic at STP conditions]]
 +
*[[GEOS-Chem_v11-01#Bugs_in_convective_flux_diagnostics_.28ND14.29|Bug fixes in convective mass flux diagnostic (ND14)]]
 +
*[[GEOS-Chem_v11-01#P.28OH.29_not_saved_out_in_ND22_diagnostic|Restore P(OH) in ND22 diagnostic]]
 +
*[[Implementation_of_HEMCO_in_GEOS-Chem#Make_anthropogenic_emissions_diagnostics_3D|Make anthropogenic emissions diagnostics 3D]]
 +
*[[Tagged_CO_simulation#Fix_ND65_bugs_in_tagged_CO_simulation|Fix ND65 bugs in tagged CO simulation]]
 +
*[[Mineral_dust_aerosols#Bug_in_ND21_diagnostic_indexing_for_size-resolved_dust_species|Fix bug in ND21 diagnostic indexing for dust species]]
 +
|Bug fix
 +
|Aaron van Donkelaar (Dalhousie)<br>Jenny Fisher (U. Wollongong)<br>[[GCST]]<br>Chris Holmes (Florida State)
 +
 +
|-valign="top"
 +
|[[GEOS-Chem_v11-02#Include_TOA_pressure_when_calculating_dry_pressure_edges|Include TOA pressure when calculating dry pressure edges]]
 +
|Science
 +
|Seb Eastham (Harvard)
  
 
|}
 
|}
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|-bgcolor="#CCCCCC"
 
|-bgcolor="#CCCCCC"
 
!width="500px"|Feature
 
!width="500px"|Feature
 +
!width="80px"|Type
 
!width="200px"|Submitted by
 
!width="200px"|Submitted by
  
 
|-valign="top"
 
|-valign="top"
 
|[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]]
 
|[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]]
 +
|Structural
 
|Seb Eastham (Harvard)<br>[[GCST]]
 
|Seb Eastham (Harvard)<br>[[GCST]]
 +
 +
|-valign="top"
 +
|Updates to the HEMCO emissions component:
 +
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02a|Update to HEMCO v2.0.004]]
 +
*[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_computation_of_local_time_in_HCO_GetSuncos|Fixed bug in computation of local time in the HEMCO routine <tt>HCO_GetSuncos</tt>]]
 +
*[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|Default US emissions to NEI2011 after 2013]]
 +
*[[Implementation_of_HEMCO_in_GEOS-Chem#Read_default_DEP_RESERVOIR_fields_from_file_when_not_found_in_HEMCO_restart_file|Read default DEP_RESERVOIR fields from file when not found in HEMCO restart file]]
 +
|Structural<br>& Bug fix
 +
|Christoph Keller (NASA GMAO)<br>Seb Eastham (Harvard)<br>Jessica Morena (Dalhousie)<br>[[GCST]]<br>Brian Boys (Dalhousie)
 +
 +
|-valign="top"
 +
|Updates to gain computational speedup:
 +
*[[FlexChem#In_GEOS-Chem_v11-02_and_later_versions|Add simplified prod/loss families to KPP to gain computational speedup]]
 +
*[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|Remove computational bottleneck in the convection module]]
 +
|Structural<br>& Bug fix
 +
|Mike Long (Harvard)<br>Bob Yantosca ([[GCST]])
 +
 +
|-valign="top"
 +
|[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|Fixed typo in nested-grid transport routine <tt>INIT_WINDOW</tt>]]
 +
|Bug fix
 +
|Bob Yantosca ([[GCST]])
 +
 +
|-valign="top"
 +
|netCDF file I/O updates:
 +
*[[The NcdfUtilities package#Enable_compression_in_netCDF-4_output_files|Enable data compression in netCDF-4 output files]]
 +
*[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]]
 +
*[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|HEMCO diagnostic and restart files now have an unlimited time dimension]]
 +
|Bug fix &<br>Structural
 +
|Chris Holmes (Florida State)<br>Andy Jacobson (NOAA)<br>[[GCST]]
 +
 +
|-valign="top"
 +
|Makefile and build sequence updates:
 +
*[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|Bug fix: Specifing <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]]
 +
*[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> for a cleaner build sequence]]
 +
|Bug fix &<br>Structural
 +
|Jiawei Zhang (Harvard)<br>[[GCST]]
 +
 +
|-valign="top"
 +
|[[UCX_chemistry_mechanism#Bug_fixes_for_running_UCX_in_ESMF_environment|Bug fixes for running UCX in ESMF environment]]
 +
|Bug fix
 +
|Christoph Keller (NASA GMAO)
 +
 +
|-valign="top"
 +
|Removal of obsolete variables:
 +
*[[#Removed_the_NNPAR_parameter_from_CMN_SIZE_mod.F|Removed the <tt>NNPAR</tt> parameter from <tt>CMN_SIZE_mod.F</tt>]]
 +
*[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt> in the wetdep module]]
 +
*[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|Removed obsolete fields of the <tt>Input_Opt</tt> object]]
 +
|Structural
 +
|[[GCST]]
  
 
|}
 
|}
  
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|-
 
−
|Developer name(s) and institution(s):
 
−
|
 
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*
 
 
|-
 
|-
 
|Version, resolution, met fields used:
 
|Version, resolution, met fields used:

Revision as of 21:12, 14 April 2017

On this page we have posted complete information about all benchmark simulations (both 1-month and 1-year) for GEOS-Chem v11-02.

1-year full-chemistry benchmarks

TBD

1-month benchmarks

v11-02a

Here is the assessment form for 1-month benchmark simulation v11-02a.

Description
New features added into GEOS-Chem:

Features affecting the full-chemistry simulation in this benchmark:

Feature Type Submitted by
Updating chemistry rate constants based on JPL Publication 15-10 Science Barron Henderson (US EPA)
Mat Evans (U. York)
Oxidants and Chemistry WG
Fixes to correct ALK4 lumping issue Science Barron Henderson (US EPA)
PAN updates Science Emily Fischer (CSU)
Monthly mean NEI2011 emissions Science GCST
Katie Travis (Harvard)
Bug fixes in the GEOS-Chem sulfate module: Bug fix Prasad Kasibhatla (Duke)
Qianjie Chen (UW)
Viral Shah (UW)
Fix bug in computation of dry deposition aerodynamic resistance Ra Bug fix Brian Boys (Dalhousie)
Fix acetone parameterization in hcox_seaflux_mod.F90 Bug fix GCST
Bug fix in cos(SZA) for start of timestep Bug fix Lizzie Lundgren (GCST)
Bug fixes for diagnostics: Bug fix Aaron van Donkelaar (Dalhousie)
Jenny Fisher (U. Wollongong)
GCST
Chris Holmes (Florida State)
Include TOA pressure when calculating dry pressure edges Science Seb Eastham (Harvard)


Features not affecting the full-chemistry simulation in this benchmark:

Feature Type Submitted by
Implement ISORROPIA v2.0 as a Fortran module (eliminating COMMON blocks) Structural Seb Eastham (Harvard)
GCST
Updates to the HEMCO emissions component: Structural
& Bug fix 		Christoph Keller (NASA GMAO)
Seb Eastham (Harvard)
Jessica Morena (Dalhousie)
GCST
Brian Boys (Dalhousie)
Updates to gain computational speedup: Structural
& Bug fix 		Mike Long (Harvard)
Bob Yantosca (GCST)
Fixed typo in nested-grid transport routine INIT_WINDOW Bug fix Bob Yantosca (GCST)
netCDF file I/O updates: Bug fix &
Structural 		Chris Holmes (Florida State)
Andy Jacobson (NOAA)
GCST
Makefile and build sequence updates: Bug fix &
Structural 		Jiawei Zhang (Harvard)
GCST
Bug fixes for running UCX in ESMF environment Bug fix Christoph Keller (NASA GMAO)
Removal of obsolete variables: Structural GCST
Version, resolution, met fields used: v11-02, GEOS-FP (72L), 4x5, July 2013
1-month benchmark finished on: TBD
Performance statistics:
Compared to previous benchmark: v11-01 public release
This update will impact:
(select all that apply with boldface) 		Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify):
Unit test results may be viewed at: TBD
Plots may be viewed at: TBD
Metrics
Global mean OH (from log file): TBD x 105 molec/cm3
Methyl chloroform lifetime: TBD years
Did either of these change by more than 5%? TBD
At the SURFACE, list all species that changed by 10% or more:
Comments on SURFACE differences:
At 500 hPa, list all species that changed by 10% or more:
Comments on 500 hPa differences:
In the ZONAL MEAN differences, list all species that changed by 10% or more:
Comments on ZONAL MEAN differences:
In the EMISSION RATIO maps, list all species that changed by 10% or more:
Comments on EMISSION RATIO differences:
Additional or summary comments:
Approval
Requires further investigation: TBD
Approved by: TBD
Date of approval: TBD

--Melissa Sulprizio (talk) 18:46, 14 April 2017 (UTC)

1-year Rn-Pb-Be benchmarks

TBD

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