Difference between revisions of "GEOS-Chem v11-01"

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==== v11-01b ====
 
==== v11-01b ====
−
 
−
NOTE: This version will require a 1-month benchmark simulation and a 1-year benchmark simulation.
 
−
 
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{| border=1 cellspacing=0 cellpadding=5
 
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|-bgcolor="#CCCCCC"
 
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!width="400px"|Feature
 
−
!width="80px"|Type
 
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!width="200px"|Submitted by
 
−
!width="250px"|Status
 
−
|-valign="top"
 
−
|Fix to direct/diffuse radiation
 
−
|Science &<br>Bug fix
 
−
|Katie Travis
 
−
|TBD
 
−
|-valign="top"
 
−
|[[Dry_deposition#Fix_for_NO3_.2B_ISOP_product|Fix for NO3 + ISOP product]]
 
−
|Science
 
−
|Katie Travis
 
−
|" "
 
−
|-valign="top"
 
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|Save curtains out along flight track
 
−
|Science
 
−
|Patrick Kim (Harvard)
 
−
|" "
 
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|-valign="top"
 
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|Lightning updates, including:
 
−
*Adjustment to scale factors
 
−
*Updated geographical bounds for lightning yield
 
−
|Science
 
−
|Patrick Kim (Harvard)<br>Katie Travis (Harvard)
 
−
|" "
 
−
|-valign="top"
 
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|Add scaling options for NEI2008/NEI2011:
 
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*Scale non-EGU NO  emissions down by a factor of 2
 
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*Scale NEI NH3 to MASAGE
 
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*Use NEI OC and BC
 
−
|Science
 
−
|Katie Travis (Harvard)
 
−
|" "
 
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|-valign="top"
 
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|Scale down soil NOx by 50% on the basis of comparison to OMI
 
−
|Science
 
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|Patrick Kim (Harvard)<br>Katie Travis (Harvard)
 
−
|" "
 
−
|}
 
−
 
−
--[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 19:21, 17 June 2015 (UTC)
 
−
 
−
==== v11-01c ====
 
  
 
NOTE: This version will require a 1-month benchmark simulation and 1-year benchmark simulation.
 
NOTE: This version will require a 1-month benchmark simulation and 1-year benchmark simulation.
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!width="200px"|Submitted by
 
!width="200px"|Submitted by
 
!width="250px"|Status
 
!width="250px"|Status
 +
 
|-valign="top"
 
|-valign="top"
 
|Update DMS climatology to Lana
 
|Update DMS climatology to Lana
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|Tom Breider (Harvard)
 
|Tom Breider (Harvard)
 
|TBD
 
|TBD
 +
 
|-valign="top"
 
|-valign="top"
 
|[[Wet_deposition#Impaction_scavenging_for_hydrophobic_BC_and_homogeneous_IN_removal|Impaction scavenging for hydrophobic BC]]
 
|[[Wet_deposition#Impaction_scavenging_for_hydrophobic_BC_and_homogeneous_IN_removal|Impaction scavenging for hydrophobic BC]]
 
|Science
 
|Science
 
|Qiaoqiao Wang (Max Planck Institute)
 
|Qiaoqiao Wang (Max Planck Institute)
−
|" "
+
|
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
 
|-valign="top"
 
|-valign="top"
 
|[[Wet_deposition#Impaction_scavenging_for_hydrophobic_BC_and_homogeneous_IN_removal|Homogeneous IN removal]]
 
|[[Wet_deposition#Impaction_scavenging_for_hydrophobic_BC_and_homogeneous_IN_removal|Homogeneous IN removal]]
 
|Science
 
|Science
 
|Qiaoqiao Wang (Max Planck Institute)
 
|Qiaoqiao Wang (Max Planck Institute)
−
|" "
+
|
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
 
|-valign="top"
 
|-valign="top"
 
|[[Aerosol emissions#Online emission of marine primary organic aerosol .28POA.29|Online emission of marine primary organic aerosol (POA)]]
 
|[[Aerosol emissions#Online emission of marine primary organic aerosol .28POA.29|Online emission of marine primary organic aerosol (POA)]]
 
|Science
 
|Science
 
|Brett Gantt (NCSU)<br>Matthew Johnson (NASA Ames)
 
|Brett Gantt (NCSU)<br>Matthew Johnson (NASA Ames)
−
|" "
+
|
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
 
|-valign="top"
 
|-valign="top"
 
|[[Aerosols_Working_Group#Organic_Aerosol_Density_.28v.10-01.29|Density of OA update]]
 
|[[Aerosols_Working_Group#Organic_Aerosol_Density_.28v.10-01.29|Density of OA update]]
 
|Science
 
|Science
 
|Melanie Hammer (Dalhousie)<br>Elo&iuml;se Marais (Harvard)
 
|Melanie Hammer (Dalhousie)<br>Elo&iuml;se Marais (Harvard)
−
|" "
+
|
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
 +
|-valign="top"
 +
|[[Aerosol_optical_properties#Implementation_of_optical_properties_for_brown_carbon|Addition of BrC UV absorption to address impacts on OH]]
 +
|Science
 +
|Melanie Hammer (Dalhousie)
 +
|
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
 +
|-valign="top"
 +
|[[Mineral_dust_aerosols#Surface_chemistry_on_dust|Acid uptake on dust aerosols]]
 +
|Science
 +
|T. Duncan Fairlie (NASA/LARC)
 +
|
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
 +
|-valign="top"
 +
|[[Mineral_dust_aerosols#Improved_dust_size_distribution_scheme|Improved dust size distribution scheme]]
 +
|Science
 +
|Li Zhang (Colorado U.)<br>Daven Henze (Colorado U.)
 +
|
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
 +
|-valign="top"
 +
|[[Sulfate_aerosols#Metal_catalyzed_oxidation_of_SO2|Metal catalyzed oxidation of SO2]] (as a switch)
 +
|Science
 +
|Becky Alexander (UW)
 +
|
 +
 
 
|}
 
|}
  
−
--[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 17:00, 22 June 2015 (UTC)
+
--[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 19:03, 22 June 2015 (UTC)
  
−
==== v11-01d ====
+
==== v11-01c ====
  
 
NOTE: This version will require a 1-month benchmark simulation only.
 
NOTE: This version will require a 1-month benchmark simulation only.
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!width="200px"|Submitted by
 
!width="200px"|Submitted by
 
!width="250px"|Status
 
!width="250px"|Status
 +
 
|-valign="top"
 
|-valign="top"
 
|[[POPs_simulation#Updates_to_PAH_code|Updates to PAH code]]
 
|[[POPs_simulation#Updates_to_PAH_code|Updates to PAH code]]
Line 152: Line 141:
 
|Carey Friedman (MIT)
 
|Carey Friedman (MIT)
 
|TBD
 
|TBD
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
|-valign="top"
 
|-valign="top"
 
|[[Mercury#Remove in-plume reduction of Hg|Remove in-plume reduction of Hg]]
 
|[[Mercury#Remove in-plume reduction of Hg|Remove in-plume reduction of Hg]]
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|-valign="top"
 
|-valign="top"
−
|[[Mineral_dust_aerosols#Surface_chemistry_on_dust|Acid uptake on dust aerosols]]
+
|[[MEGAN_biogenic_emissions#CO2_direct_effect_on_isoprene_emissions|CO2 direct effect on isoprene emissions]]
 
|Science
 
|Science
−
|T. Duncan Fairlie (NASA/LARC)
+
|Amos Tai (CUHK)
 
|
 
|
 
*Delivered to [[GEOS-Chem Support Team|GCST]]
 
*Delivered to [[GEOS-Chem Support Team|GCST]]
  
 
|-valign="top"
 
|-valign="top"
−
|[[NOx-Ox-HC-aerosol#Monthly mean surface distributions|Monthly mean surface methane distributions]]
+
|[[Organics_Working_Group#Criegee_intermediates|Criegee intermediates]]
 
|Science
 
|Science
−
|Lee Murray (NASA GISS/LDEO)
+
|Dylan Millet (U. Minnesota)<br>Elo&iuml;se Marais (Harvard)
−
|TBD
+
|
 +
*Delivered to [[GEOS-Chem Support Team|GCST]]
 +
 
  
 
|-valign="top"
 
|-valign="top"
−
|[[MEGAN_biogenic_emissions#CO2_direct_effect_on_isoprene_emissions|CO2 direct effect on isoprene emissions]]
+
|[[PAN|PAN updates]]
 
|Science
 
|Science
−
|Amos Tai (CUHK)
+
|Emily Fischer (CSU)
 
|
 
|
−
*Delivered to [[GEOS-Chem Support Team|GCST]] (Nov 3013)
+
*Delivered to [[GEOS-Chem Support Team|GCST]]
  
 
|-valign="top"
 
|-valign="top"
−
|[[Organics_Working_Group#Criegee_intermediates|Criegee intermediates]]
+
|NetCDF output: Flexible diagnostic package and tracer restart file
 
|Science
 
|Science
−
|Dylan Millet (U. Minnesota)<br>Elo&iuml;se Marais (Harvard)
+
|[[GEOS-Chem Support Team]]
−
|
+
|TBD
−
*Delivered to [[GEOS-Chem Support Team|GCST]] (Nov 3013)
+
  
 
|-valign="top"
 
|-valign="top"
−
|[[Mineral_dust_aerosols#Improved_dust_size_distribution_scheme|Improved dust size distribution scheme]]
+
|Harmonizing Henry's Law coefficients across wet and dry deposition (SO2 treated as effective Henry's Law)
 
|Science
 
|Science
−
|Li Zhang (Colorado U.)<br>Daven Henze (Colorado U.)
+
|Duncan Fairlie (NASA/LARC)<br>Daniel Jacob (Harvard)<br>Prasad Kasibhatla (Duke)<br>Becky Alexander (UW)
−
|
+
|TBD
−
*Delivered to [[GEOS-Chem Support Team|GCST]] (Jan 2014)
+
  
 
|-valign="top"
 
|-valign="top"
−
|[[Sulfate_aerosols#Metal_catalyzed_oxidation_of_SO2|Metal catalyzed oxidation of SO2]] (as a switch)
+
|Flexchem
 
|Science
 
|Science
−
|Becky Alexander (UW)
+
|Mike Long (Harvard)
 
|TBD
 
|TBD
  
 
|-valign="top"
 
|-valign="top"
−
|[[Aerosol_optical_properties#Implementation_of_optical_properties_for_brown_carbon|Addition of BrC UV absorption to address impacts on OH]]
+
|Uniformity of units
 
|Science
 
|Science
−
|Melanie Hammer (Dalhousie)
+
|Lizzie Lundgren ([[GEOS-Chem Support Team]])
 +
|
 +
*To be implemented after Flexchem
 +
 
 +
|-valign="top"
 +
|[[NOx-Ox-HC-aerosol#Monthly mean surface distributions|Monthly mean surface methane distributions]]
 +
|Science
 +
|Lee Murray (NASA GISS/LDEO)
 
|TBD
 
|TBD
  
 
|-valign="top"
 
|-valign="top"
−
|Update MODIS LAI fields through 2015
+
|Fix to direct/diffuse radiation
 +
|Science &<br>Bug fix
 +
|Katie Travis
 +
|TBD
 +
 
 +
|-valign="top"
 +
|[[Dry_deposition#Fix_for_NO3_.2B_ISOP_product|Fix for NO3 + ISOP product]]
 
|Science
 
|Science
−
|Barron Henderson (UF)
+
|Katie Travis
 
|TBD
 
|TBD
  
 
|-valign="top"
 
|-valign="top"
−
|Flexchem
+
|Update MODIS LAI fields through 2015
 
|Science
 
|Science
−
|Mike Long (Harvard)
+
|Barron Henderson (UF)
 
|TBD
 
|TBD
  
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|Science
 
|Science
 
|Jenny Fisher (U. Wollongong)
 
|Jenny Fisher (U. Wollongong)
−
|TBD
 
−
 
−
|-valign="top"
 
−
|Uniformity of units
 
−
|Science
 
−
|Lizzie Lundgren ([[GEOS-Chem Support Team]])
 
 
|TBD
 
|TBD
  
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|Science
 
|Science
 
|Dylan Millet (UMN)<br>Xin Chen (UMN)  
 
|Dylan Millet (UMN)<br>Xin Chen (UMN)  
−
|TBD
 
−
 
−
|-valign="top"
 
−
|Harmonizing Henry's Law coefficients across wet and dry deposition (SO2 treated as effective Henry's Law)
 
−
|Science
 
−
|Duncan Fairlie (NASA/LARC)<br>Daniel Jacob (Harvard)<br>Prasad Kasibhatla (Duke)<br>Becky Alexander (UW)
 
−
|TBD
 
−
 
−
|-valign="top"
 
−
|NetCDF output: Flexible diagnostic package and tracer restart file
 
−
|Science
 
−
|[[GEOS-Chem Support Team]]
 
 
|TBD
 
|TBD
  
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|}
 
|}
  
−
--[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 18:08, 17 June 2015 (UTC)
+
--[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 19:03, 22 June 2015 (UTC)
  
 
=== New data directories ===
 
=== New data directories ===

Revision as of 19:03, 22 June 2015

Overview

History

The table below shows the previous, current, and successive versions of GEOS-Chem:

Previous version This version Next version
GEOS-Chem v10-01 GEOS-Chem v11-01 TBD
PUBLIC RELEASE 17 Jun 2015 TBD TBD
View v10-01 benchmark history View v11-01 benchmark history TBD

--Bob Y. (talk) 20:29, 17 June 2015 (UTC)

What's new in this version

NOTE: v11-01a, v11-02b, etc. denote 1-month benchmark simulations, which are designed to evaluate GEOS-Chem's performance at intermediate stages of development.

v11-01a

Please see the Benchmark approval form for GEOS-Chem v11-01a for complete information about the validation of GEOS-Chem v10-01a.

Feature Type Submitted by Status
Correctly incorporate moisture into air quantity calculations and tracer unit conversions Science &
Bug fix 		Lizzie Lundgren (GEOS-Chem Support Team) TBD

--Bob Y. 13:33, 5 May 2015 (EDT)

v11-01b

NOTE: This version will require a 1-month benchmark simulation and 1-year benchmark simulation.

Feature Type Submitted by Status
Update DMS climatology to Lana Science Tom Breider (Harvard) TBD
Impaction scavenging for hydrophobic BC Science Qiaoqiao Wang (Max Planck Institute)
Homogeneous IN removal Science Qiaoqiao Wang (Max Planck Institute)
Online emission of marine primary organic aerosol (POA) Science Brett Gantt (NCSU)
Matthew Johnson (NASA Ames)
Density of OA update Science Melanie Hammer (Dalhousie)
Eloïse Marais (Harvard)
Addition of BrC UV absorption to address impacts on OH Science Melanie Hammer (Dalhousie)
Acid uptake on dust aerosols Science T. Duncan Fairlie (NASA/LARC)
Improved dust size distribution scheme Science Li Zhang (Colorado U.)
Daven Henze (Colorado U.)
Metal catalyzed oxidation of SO2 (as a switch) Science Becky Alexander (UW)

--Melissa Sulprizio (talk) 19:03, 22 June 2015 (UTC)

v11-01c

NOTE: This version will require a 1-month benchmark simulation only.

Feature Type Submitted by Status
Updates to PAH code Science Carey Friedman (MIT) TBD
Remove in-plume reduction of Hg Science Yanxu Zhang (Harvard) " "

--Melissa Sulprizio (talk) 18:23, 16 June 2015 (UTC)

In the pipeline

The following features are slated for inclusion in GEOS-Chem v11-01:

Feature Type Submitted by Status
CO2 direct effect on isoprene emissions Science Amos Tai (CUHK)
Criegee intermediates Science Dylan Millet (U. Minnesota)
Eloïse Marais (Harvard)


PAN updates Science Emily Fischer (CSU)
NetCDF output: Flexible diagnostic package and tracer restart file Science GEOS-Chem Support Team TBD
Harmonizing Henry's Law coefficients across wet and dry deposition (SO2 treated as effective Henry's Law) Science Duncan Fairlie (NASA/LARC)
Daniel Jacob (Harvard)
Prasad Kasibhatla (Duke)
Becky Alexander (UW) 		TBD
Flexchem Science Mike Long (Harvard) TBD
Uniformity of units Science Lizzie Lundgren (GEOS-Chem Support Team)
  • To be implemented after Flexchem
Monthly mean surface methane distributions Science Lee Murray (NASA GISS/LDEO) TBD
Fix to direct/diffuse radiation Science &
Bug fix 		Katie Travis TBD
Fix for NO3 + ISOP product Science Katie Travis TBD
Update MODIS LAI fields through 2015 Science Barron Henderson (UF) TBD
Updated organic deposition Science Katie Travis (Harvard)
Jenny Fisher (U. Wollongong) 		TBD
Hg emission update: NEI, EDGAR, NPRI, UNEP Science Hg and POPs WG TBD
Optimized ocean rate coefficients for Hg simulation Science Shaojie Song (MIT) TBD
Update offline oxidant fields for Hg simulation Science Viral Shah (UW)
Johan Schmidt (Harvard) 		TBD
Dry deposition updates for Hg simulation Science Bess Corbitt (Harvard) TBD
New atmospheric Hg redox mechanism Science Hannah Horowitz (Harvard) TBD
GTMM revision Science Bess Corbitt (Harvard) TBD
EPA-derived BC/OA emissions over US (1990-2012) Science David Ridley (MIT) TBD
Update density of BC to 1.8 and add absorption enhancement factor in input.geos Science Xuan Wang (MIT) TBD
Updates to isoprene chemistry, includes:
  • Fast photolysis of carbonyl nitrates
  • Aerosol uptake of organic nitrates
 Science Jenny Fisher (U. Wollongong)
Eloïse Marais (Harvard)
Kelvin Bates (Caltech)
Katie Travis (Harvard) 		TBD
Nighttime isoprene chemistry updates Science Rebecca Schwantes (Caltech) TBD
Remove dependence of species drydep on HNO3 drydep Science Katie Travis (Harvard)
Jenny Fisher (U. Wollongong) 		TBD
Arctic Hg cycling Science Jenny Fisher (U. Wollongong) TBD
A snow NOx source from deep snowpack Science Maria Zatko (UW)
Becky Alexander (UW) 		TBD
Land cover module in GEOS-Chem Science Jeffrey Geddes (MIT)
Michael Long (Harvard) 		TBD
Merge standard simulation with specialty simulations for OVOC, acids, aromatics, dicarbonyls, terpenes Science Dylan Millet (UMN)
Xin Chen (UMN) 		TBD
Automate redistribution of NOx in HEMCO Science Lee Murray (NASA GISS/LDEO) TBD
Injection height for fire emissions Science Emily Fischer (CSU) TBD
Improved lightning emission scheme Science Lee Murray (NASA GISS/LDEO) TBD

--Melissa Sulprizio (talk) 19:03, 22 June 2015 (UTC)

New data directories

The following new data directories have been added for GEOS-Chem v11-01. You will have to download the directories relevant to your simulation.

  • TBD

Validation

In this section we provide information about the benchmarks and tests that we have done to validate GEOS-Chem v11-01.

1-month and 1-year benchmarks

For complete information about the benchmark simulations used to validate GEOS-Chem v11-01, please see our GEOS-Chem v11-01 benchmark history wiki page.

--Melissa Sulprizio 10:30, 5 May 2015 (EDT)

Unit tests for GEOS-Chem v11-01

We performed a full set of unit tests on GEOS-Chem before submitting each 1-month benchmark. Click on the links below to see the results from each set of unit tests:

Unit test Date Notes
TBD TBD

--Melissa Sulprizio 10:30, 5 May 2015 (EDT)

Previous issues now resolved in GEOS-Chem v11-01

The following bugs and/or technical issues have now been resolved in GEOS-Chem v11-01.

  • None yet

Outstanding issues not yet resolved in GEOS-Chem v11-01

The following issues have not yet been resolved in GEOS-Chem v11-01. Some of these issues represent questions of open research rather than bugs in the source code.

  • None yet
Retrieved from "https://wiki.seas.harvard.edu/geos-chem/index.php?title=GEOS-Chem_v11-01&oldid=21959"