Difference between revisions of "GCHP v11-02"

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(→‎GEOS-Chem HP Version Mapping and Status)
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== Overview ==
 
== Overview ==
  
−
=== GEOS-Chem HP Version Mapping and Status ===
+
TBD
  
−
The table below maps GEOS-Chem versions with the compatible high performance option (GCHP) versions and status. The high performance framework for GEOS-Chem is maintained in a separate repository and is not currently a git submodule within GEOS-Chem. Until we switch to incorporating the GCHP repository as a git submodule, you must manually checkout the appropriate GCHP version via git tags for the GEOS-Chem version you are using using the mapping below as a guide.
+
== Version Mapping and Status ==
 +
 
 +
The table below maps GEOS-Chem versions with the compatible high performance option (GCHP) versions and status. The high performance framework for GEOS-Chem is maintained in a separate repository. Until we incorporate the GCHP repository as a git submodule, you must manually checkout the appropriate GCHP version via the listed git tag for the GEOS-Chem version you are using.
  
 
{| border=1 cellspacing=0 cellpadding=5  
 
{| border=1 cellspacing=0 cellpadding=5  
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|In progress
 
|In progress
 
|
 
|
−
*[[GEOS-Chem_v11-02_benchmark_history#v11-02b|v11-02b 1-month benchmark form]]
 
−
*[[GEOS-Chem_v11-02_benchmark_history#v11-02b_1-month_comparison|v11-02b HP 1-month benchmark form]]
 
  
 
|}
 
|}
  
−
=== What's new in this version ===
+
=== HP Version Features ===
  
 
''NOTE: v11-02a, v11-02b, etc. denote 1-month benchmark simulations, which are designed to evaluate GEOS-Chem's performance at intermediate stages of development.''
 
''NOTE: v11-02a, v11-02b, etc. denote 1-month benchmark simulations, which are designed to evaluate GEOS-Chem's performance at intermediate stages of development.''
  
−
==== v11-02b / GCHP v1.1.0 ====
+
==== HP v1.1.0 ====
  
−
Please see the the following link for complete information about the validation of GEOS-Chem v11-02a:
+
Please see the the following link for complete information about the validation of HP v1.1.0:
−
#[[GEOS-Chem_v11-02_benchmark_history#v11-02a|''Approval form for 1-month benchmark simulation v11-02a'']]
+
*[[GEOS-Chem_v11-02_benchmark_history#v11-02b|v11-02b 1-month benchmark form]]
−
#[[GEOS-Chem_v11-02_benchmark_history#v11-02a-Run0|''Results for 1-year benchmark simulation v11-02a-Run0'']]
+
*[[GEOS-Chem_v11-02_benchmark_history#v11-02b_1-month_comparison|v11-02b HP 1-month benchmark form]]
−
#[[GEOS-Chem_v11-02_benchmark_history#v11-02a-Run0|''Results for 1-year benchmark simulation v11-02a-Run1'']] (final version)
+
  
 
{| border=1 cellspacing=0 cellpadding=5  
 
{| border=1 cellspacing=0 cellpadding=5  
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|-valign="top"
 
|-valign="top"
−
|[[Updates_in_JPL_Publication_15-10|Update chemistry rate constants based on ''JPL Publication 15-10'']]
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|
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|Barron Henderson (US EPA),<br>Mat Evans (U. York), &<br>[[Chemistry Issues|Oxidants and Chemistry WG]]
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|
−
|Science
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|
−
|Approved 12 May 2017
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|
−
 
+
−
|-valign="top"
+
−
|[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|Fixes to correct ALK4 lumping issue]]
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−
|Barron Henderson (US EPA)
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−
|Science
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−
|" "
+
−
 
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−
|-valign="top"
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−
|[[PAN|PAN updates (including emissions, deposition, species, chemistry)]]
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−
|Emily Fischer (CSU)
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−
|Science
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−
|" "
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−
 
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−
|-valign="top"
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−
|[[EPA/NEI11_North_American_emissions#Monthly_mean_emissions|Monthly mean NEI2011 emissions]]
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−
|[[GCST]] &<br>Katie Travis (Harvard)
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−
|Science
+
−
|" "
+
−
 
+
−
|-valign="top"
+
−
|Bug fixes in the GEOS-Chem sulfate module:
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−
*[[Sulfate_aerosols#Fix_error_in_production_of_SO4s.2C_NITs_in_SEASALT_CHEM_routine|Fix error in production of SO4s and NITs in <tt>SEASALT_CHEM</tt>]]
+
−
*[[Sulfate_aerosols#Fix_bug_in_CHEM_NIT_routine|Fix bug in <tt>CHEM_NIT</tt>]]
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−
*[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|Fix for sulfate production in <tt>HET_DROP_CHEM</tt>]]
+
−
*[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|Fix bugs in sulfate chemistry routines]]
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−
|<br>Prasad Kasibhatla (Duke)<br>Prasad Kasibhatla (Duke)<br>Qianjie Chen (UW)<br>Viral Shah (UW)
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−
|Bug fix
+
−
|" "
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−
 
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−
|-valign="top"
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−
|[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|Fix bug in dry deposition aerodynamic resistance]]
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−
|Brian Boys (Dalhousie)
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−
|Bug fix
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−
|" "
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−
 
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−
|-valign="top"
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−
|[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|Fix acetone parameterization in <tt>hcox_seaflux_mod.F90</tt>]]
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−
|[[GCST]]
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−
|Bug fix
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−
|" "
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−
 
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−
|-valign="top"
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−
|[[GEOS-Chem_v11-01#Bug_in_cos.28SZA.29_for_start_of_timestep|Bug fix in cos(SZA) for start of timestep]]
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−
|Lizzie Lundgren ([[GCST]])
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−
|Bug fix
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−
|" "
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−
 
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|-valign="top"
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−
|[[GEOS-Chem_v11-02#Include_TOA_pressure_when_calculating_dry_pressure_edges|Include TOA pressure when calculating dry pressure edges]]
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−
|Seb Eastham (Harvard)
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−
|Science
+
−
|" "
+
  
 
|-
 
|-
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|-valign="top"
 
|-valign="top"
−
|[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|Implement ISORROPIA v2.0 as a Fortran module]]
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|
−
|Seb Eastham (Harvard) &<br>[[GCST]]
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|
−
|Structural
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|
−
|" "
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|
−
 
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−
|-valign="top"
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−
|Updates to the HEMCO emissions component:
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−
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02a|Update to HEMCO v2.0.004]]
+
−
*[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_computation_of_local_time_in_HCO_GetSuncos|Fixed bug in computation of local time in <tt>HCO_GetSuncos</tt>]]
+
−
*[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|Default US emissions to NEI2011 after 2013]]
+
−
*[[Implementation_of_HEMCO_in_GEOS-Chem#Read_default_DEP_RESERVOIR_fields_from_file_when_not_found_in_HEMCO_restart_file|Read default <tt>DEP_RESERVOIR</tt> fields from file]]
+
−
|<br>Christoph Keller (NASA GMAO)<br>Seb Eastham (Harvard)<br>Jessica Morena (Dalhousie)<br>Brian Boys (Dalhousie) & [[GCST]]
+
−
|Structural<br>& Bug fix
+
−
|" "
+
−
 
+
−
|-valign="top"
+
−
|Updates to gain computational speedup:
+
−
*[[FlexChem#In_GEOS-Chem_v11-02_and_later_versions|Add simplified prod/loss families to KPP]]
+
−
*[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|Remove computational bottleneck in the convection module]]
+
−
|<br>Mike Long (Harvard)<br>Bob Yantosca ([[GCST]])
+
−
|Structural<br>& Bug fix
+
−
|" "
+
−
 
+
−
|-valign="top"
+
−
|[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|Fixed typo in <tt>INIT_WINDOW</tt>]]
+
−
|Bob Yantosca ([[GCST]])
+
−
|Bug fix
+
−
|" "
+
−
 
+
−
|-valign="top"
+
−
|netCDF file I/O updates:
+
−
*[[The NcdfUtilities package#Enable_compression_in_netCDF-4_output_files|Enable data compression in netCDF-4 output files]]
+
−
*[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]]
+
−
*[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|HEMCO files now have an unlimited time dimension]]
+
−
|<br>Chris Holmes (Florida State)<br>Andy Jacobson (NOAA)<br>[[GCST]]
+
−
|Bug fix &<br>Structural
+
−
|" "
+
−
 
+
−
|-valign="top"
+
−
|Makefile and build sequence updates:
+
−
*[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|Specifying <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]]
+
−
*[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt>]]
+
−
|<br>Jiawei Zhang (Harvard)<br>[[GCST]]
+
−
|Bug fix &<br>Structural
+
−
|" "
+
−
 
+
−
|-valign="top"
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−
|[[UCX_chemistry_mechanism#Bug_fixes_for_running_UCX_in_ESMF_environment|Bug fixes for running UCX in ESMF environment]]
+
−
|Christoph Keller (NASA GMAO)
+
−
|Bug fix
+
−
|" "
+
−
 
+
−
|-valign="top"
+
−
|Bug fixes for diagnostics:
+
−
*[[Particulate_matter_in_GEOS-Chem#Save_out_PM2.5_diagnostic_at_STP_conditions|Save out PM2.5 diagnostic at STP conditions]]
+
−
*[[GEOS-Chem_v11-01#Bugs_in_convective_flux_diagnostics_.28ND14.29|Bug fixes in convective mass flux diagnostic]]
+
−
*[[GEOS-Chem_v11-01#P.28OH.29_not_saved_out_in_ND22_diagnostic|Restore P(OH) in ND22 diagnostic]]
+
−
*[[Implementation_of_HEMCO_in_GEOS-Chem#Make_anthropogenic_emissions_diagnostics_3D|Make anthropogenic emissions diagnostics 3D]]
+
−
*[[Tagged_CO_simulation#Fix_ND65_bugs_in_tagged_CO_simulation|Fix ND65 bugs in tagged CO simulation]]
+
−
*[[Mineral_dust_aerosols#Bug_in_ND21_diagnostic_indexing_for_size-resolved_dust_species|Fix bug in ND21 diagnostic indexing for dust species]]
+
−
|<br>Aaron van Donkelaar (Dalhousie)<br>Jenny Fisher (U. Wollongong)<br>[[GCST]]<br>Jenny Fisher (U. Wollongong)<br>Chris Holmes (Florida State)
+
−
|Bug fix
+
−
|" "
+
−
 
+
−
|-valign="top"
+
−
|Removal of obsolete variables:
+
−
*[[#Removed_the_NNPAR_parameter_from_CMN_SIZE_mod.F|Removed the <tt>NNPAR</tt> parameter from <tt>CMN_SIZE_mod.F</tt>]]
+
−
*[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt>]]
+
−
*[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|Removed obsolete fields of the <tt>Input_Opt</tt> object]]
+
−
|[[GCST]]
+
−
|Structural
+
−
|" "
+
  
 
|}
 
|}
  
−
==== v11-01 / GCHP v1.0.0 ====
+
==== HP v1.0.0 ====
  
−
Please see the the following link for complete information about the validation of GEOS-Chem v11-02b:
+
GEOS-Chem HP v1.0.0 did not undergo a formal benchmark. Please see the following link for information about the internal benchmark of this version:
−
#[[GEOS-Chem_v11-02_benchmark_history#v11-02b|''Approval form for 1-month benchmark simulation v11-02b'']]
+
#[[GEOS-Chem_HP_Status|GEOS-Chem HP Status]]
−
#[[GEOS-Chem_v11-02_benchmark_history#v11-02b_HP_1-month|''Approval form for 1-month benchmark simulation v11-02b with high performance option (GCHP)'']]
+
  
 
{| border=1 cellspacing=0 cellpadding=5  
 
{| border=1 cellspacing=0 cellpadding=5  
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|-
 
|-
−
!colspan="4" bgcolor="#CCFFFF"|Features '''not''' affecting the full-chemistry simulation:
+
!colspan="4" bgcolor="#CCFFFF"|Features affecting the full-chemistry simulation:
  
 
|-valign="top"
 
|-valign="top"
−
|[[GEOS-Chem HP|Source code updates for high performance option (GCHP)]]
+
|
−
|Seb Eastham (Harvard)<br>Lizzie Lundgren (Harvard)<br>Mike Long (Harvard)<br>Jiawei Zhuang (Harvard)<br>Bob Yantosca (Harvard)
+
|
−
|Structural
+
|
−
|In progress
+
|
  
−
|-valign="top"
+
|-
−
|Bug fixes for diagnostics:
+
!colspan="4" bgcolor="#CCFFFF"|Features '''not''' affecting the full-chemistry simulation:
−
*[[GEOS-Chem_v11-02#ND26_vertical_flux_diagnostic_does_not_yield_mass_balance_in_advection|Use FZ array to compute ND26 vertical flux diagnostic]]
+
−
*[[GEOS-Chem_v11-02#ND40_planeflight_diagnostic_not_always_written_out_when_turned_on|Always write ND40 planeflight diagnostic when enabled]]
+
−
|<br>Ilya Stanevic (Toronto)<br>Lee Murray (Rochester)
+
−
|Bug fix
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−
|" "
+
  
 
|-valign="top"
 
|-valign="top"
−
|[[Tagged_O3_simulation#Write_initial_and_final_Ox_mass_to_file|Write initial and final Ox mass to file when using the tagged O3 simulation]]
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|
−
|Bob Yantosca ([[GCST]])
+
|
−
|Structural
+
|
−
|" "
+
|
−
 
+
−
|-valign="top"
+
−
|[[GEOS-Chem_v11-02#CO2_emissions_unit_conversion_not_consistent_with_new_advection_pressure|Convert CO2 emissions units using dry pressure used in advection]]
+
−
|Meemong Lee (JPL)
+
−
|Science
+
−
|" "
+
−
 
+
−
|-valign="top"
+
−
|[[QFED_biomass_burning_emissions|Add QFED emissions for 2014-2016]]
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−
|Christoph Keller (NASA GMAO)
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−
|Science
+
−
|" "
+
  
 
|}
 
|}
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!width="80px"|Type
 
!width="80px"|Type
 
!width="150px"|Status
 
!width="150px"|Status
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|-valign="top"  
 
|-valign="top"  
−
|TBD
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|
−
|TBD
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|TBD
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|
−
|TBD
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|
−
 
+
  
 
|}
 
|}

Revision as of 17:00, 12 June 2017

Overview

TBD

Version Mapping and Status

The table below maps GEOS-Chem versions with the compatible high performance option (GCHP) versions and status. The high performance framework for GEOS-Chem is maintained in a separate repository. Until we incorporate the GCHP repository as a git submodule, you must manually checkout the appropriate GCHP version via the listed git tag for the GEOS-Chem version you are using.

GEOS-Chem version GHP git tag Status Resources
v11-02b hp_v1.1.0 In progress

HP Version Features

NOTE: v11-02a, v11-02b, etc. denote 1-month benchmark simulations, which are designed to evaluate GEOS-Chem's performance at intermediate stages of development.

HP v1.1.0

Please see the the following link for complete information about the validation of HP v1.1.0:

Feature Submitted by Type Status
Features affecting the full-chemistry simulation:
Features not affecting the full-chemistry simulation:

HP v1.0.0

GEOS-Chem HP v1.0.0 did not undergo a formal benchmark. Please see the following link for information about the internal benchmark of this version:

  1. GEOS-Chem HP Status
Feature Submitted by Type Status
Features affecting the full-chemistry simulation:
Features not affecting the full-chemistry simulation:


In the pipeline

Feature Submitted by Type Status
On hold

Outstanding issues not yet resolved in GEOS-Chem HP v11-02

TBD

Retrieved from "https://wiki.seas.harvard.edu/geos-chem/index.php?title=GCHP_v11-02&oldid=33246"