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| − | On this page we list the GEOS-Chem bugs that users have recently encountered, and how to fix them. | + | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. |
| | | | |
| − | == Issues resolved in GEOS-Chem v9-01-02 == | + | == Bugs and fixes lists have now been migrated to Github == |
| | | | |
| − | #[[GEOS-Chem v9-01-02#Mis-indexing error in partition.f|Corrected mis-indexing error in partition.f caused by the dynamic tropopause]]
| + | We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there. |
| − | #[[GEOS-Chem v9-01-02#Out-of-bounds error in readchem.f|Corrected out-of-bounds error in readchem.f]]
| + | |
| − | #[[Restart files#Potential issue with reading restart.cspec file|Fix for mis-indexing issue in CSPEC restart file]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Various bug fixes for the offline Hg simulation|Various bug fixes for the offline Hg simulation]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Bug fix for leap years with GCAP|Bug fixes for leap years when using GCAP met fields]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Minor bug fixes for emissions routines affecting offline simulations|Minor bug fixes for emissions routines affecting offline simulations]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Fixes for minor issues affecting nested-grid simulations|Minor bug fixes for emissions routines affecting offline simulations]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Bug fixes for compatibility with the PGI compiler|Fixes for better compatibility with the PGI compiler]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Washout fix for non-aerosol species|Washout fix for non-aerosol species]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Fix for GEIA emissions scaling factor over Botswana|Fix for GEIA emissions scaling factor over Botswana]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Fixed minor issues in MERRA cloud convection routine|Fixed minor issues in MERRA cloud convection routine]]
| + | |
| − | #[[GEOS-Chem_v9-01-02#Fix for vertical regridding of offline OH for offline simulations|Fix for vertical regridding of offline OH for offline simulations]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Further bug fixes for the offline Hg simulation|Further bug fixes for the offline Hg simulation]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Further fixes for nested-grid simulations|Further fixes for nested-grid simulations]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Fix for partitioning chemical species|Fix for partitioning chemical species]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Bug fixes for biofuel emissions|Bug fixes for biofuel emissions]]
| + | |
| − | #[[Ship emissions#Potential bug in EDGAR ship emissions code|Fix bug in EDGAR ship emissions code]]
| + | |
| − | #[[Ship emissions#Bug in ship NOx emissions|Bug fix for ship NOx emissions]]
| + | |
| − | #[[GEOS-Chem_v9-01-02#Prevent_out-of-bounds_errors_in_ND01_and_ND02_diagnostics_for_Rn-Pb-Be_simulation|Prevent out-of-bounds errors in ND01 and ND02 diagnostics (Rn-Pb-Be simulation)]]
| + | |
| − | #[[GEOS-Chem_v9-01-02#Do_not_use_erroneous_MEGAN_AEF_data_for_nested-grid_simulations|Do not use erroneous MEGAN AEF data for nested-grid simulations]]
| + | |
| | | | |
| − | --[[User:Melissa Payer|Melissa Payer]] 12:08, 21 November 2011 (EST)<br> | + | === GEOS-Chem 13 === |
| − | --[[User:Bmy|Bob Y.]] 12:05, 28 November 2011 (EST)
| + | |
| | | | |
| − | == Issues resolved in GEOS-Chem v9-01-01 == | + | {| border=1 cellspacing=0 cellpadding=5 |
| | + | |-bgcolor="#CCCCCC" |
| | + | !Version |
| | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| − | #[[GEOS-Chem v9-01-01#Patches from v8-03-02|Standardization of patches from v8-03-02]]
| + | |-valign="top" |
| − | #[[GEOS-Chem v9-01-01#Bug fix for biofuels in EPA.2FNEI05|Bug fix for biofuels in EPA/NEI05]]
| + | |[[GEOS-Chem_model_development_priorities#13.3.0|13.3.0]] |
| − | #[[GEOS-Chem v9-01-01#Important bug fixes for ship emissions|Important bug fixes for ship emissions]]
| + | |TBD |
| − | #[[GEOS-Chem v9-01-01#Duplicate diagnostics|Duplicate diagnostics]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem v9-01-01#Starting runs at times other than 00 GMT|Starting runs at times other than 00 GMT]]
| + | |[https://github.com/geoschem/geos-chem/milestone/19 '''Milestone 13.3.0'''] |
| − | #[[GEOS-Chem v9-01-01#Fix ND15 for non-local PBL scheme|Fix ND15 for non-local PBL scheme]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Fix to prevent div-by-zero in sulfate mod.f|Fix to prevent div-by-zero in sulfate_mod.f]]
| + | |
| − | #[[GEOS-Chem v9-01-01#PEDGE-.24 in timeseries diagnostics|PEDGE-$ in timeseries diagnostics]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Running offline simulations on the GEOS-5 72L grid|Running offline simulations on the GEOS-5 72L grid]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Fixes to improve efficiency in vdiff mod.f90|Fixes to improve efficiency in vdiff_mod.f90]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Typos in megan mod.f|Typos in megan_mod.f]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Typos in edgar mod.f|Typos in edgar_mod.f]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 11:25, 18 February 2011 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem_model_development_priorities#13.2.0|13.2.0]] |
| | + | |TBD |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/18 '''Milestone 13.2.0'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-03-02 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 13.1.0|13.1.0]] |
| | + | |TBD |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/17 '''Milestone 13.1.0'''] |
| | | | |
| − | #[[GEOS-Chem v8-03-02#Fix for EPA/NEI 2005 emissions|Fix for EPA/NEI 2005 emissions]]
| + | |-valign="top" |
| − | #[[GEOS-Chem v8-03-02#Minor fixes in gamap_mod.f|Minor fixes in gamap_mod.f]]
| + | |[[GEOS-Chem 13.0.2|13.0.2]] |
| − | #[[GEOS-Chem v8-03-02#Bug fix for ND42 diagnostic and ISORROPIA II|Bug fix for ND42 diagnostic and ISORROPIA II]]
| + | |12 Apr 2021 |
| − | #[[GEOS-Chem v8-03-02#Minor fix for AOD calculation|Minor fix for AOD calculation]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem v8-03-02#Avoid using unallocated arrays in edgar_mod.f|Avoid using unallocated arrays in edgar_mod.f]]
| + | |[https://github.com/geoschem/geos-chem/milestone/21?closed=1 '''Milestone 13.0.2'''] |
| − | #[[GEOS-Chem v8-03-02#Transport fix for GEOS-5 nested grid simulations|Transport fix for GEOS-5 nested grid simulations]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:53, 7 September 2010 (EDT) | + | |-valign="top" |
| | + | |[[GEOS-Chem 13.0.1|13.0.1]] |
| | + | |23 Mar 2021 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/20?closed=1 '''Milestone 13.0.1'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-03-01 == | + | |-valign="top" |
| | + | |width="80px"|[[GEOS-Chem 13.0.0|13.0.0]] |
| | + | |width="100px"|18 Mar 2021 |
| | + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/8?closed=1 '''Milestone 13.0.0'''] |
| | | | |
| − | #[[GEOS-Chem v8-03-01#Patch to enable call to SOA PARA INIT|Patch to enable call to SOA PARA INIT]]
| + | |} |
| − | #[[GEOS-Chem v8-03-01#Patch to fix declaration of IONIC in ISORROPIA_II|Patch to fix declaration of IONIC in ISORROPIA_II]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Patch to fix bug in Aromatic SOA|Patch to fix bug in Aromatic SOA]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Patch to scale AOD diagnostic output to other wavelengths|Patch to scale AOD diagnostic output to other wavelengths]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Photolysis now computed at midpoint of chemistry timestep|Photolysis now computed at midpoint of chemistry timestep]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug fix in ISORROPIA for offline aerosol|Bug fix in ISORROPIA for offline aerosol]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Minor bug fix in SRCSO2|Minor bug fix in SRCSO2 ]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug in GET EMMONOT MEGAN|Bug in GET_EMMONOT_MEGAN]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug in READ_ANTHRO_NH3|Bug in READ_ANTHRO_NH3]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Fix for initialization of EMEP ship emissions|Fix for initialization of EMEP ship emissions]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug fix in AVGPOLE|Bug fix in AVGPOLE]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug fix in EMITHIGH (carbon_mod.f)|Bug fix in EMITHIGH (carbon_mod.f)]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Fix to prevent numerical overflow in EXP function|Fix to prevent numerical overflow in EXP function]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 15:05, 30 June 2010 (EDT) | + | === GEOS-Chem 12 === |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-04 == | + | {| border=1 cellspacing=0 cellpadding=5 |
| | + | |-bgcolor="#CCCCCC" |
| | + | !Version |
| | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| − | #[[GEOS-Chem v8-02-04#Memory issue with KPP|Memory issue with KPP]]
| + | |-valign="top" |
| − | #[[GEOS-Chem v8-02-04#Updated reactions in sulfate_mod.f|Updated reactions in sulfate_mod.f]]
| + | |[[GEOS-Chem 12#12.9.3|12.9.3]] |
| − | #[[GEOS-Chem v8-02-04#Bug fix for EMEP ship emissions|Bug fix for EMEP ship emissions]]
| + | |06 Aug 2020 |
| − | #[[GEOS-Chem v8-02-04#Minor fix for molecular weights in drydep_mod.f|Minor fix for molecular weights in drydep_mod.f]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem v8-02-04#Bug fix in biomass_mod.f|Bug fix in biomass_mod.f]]
| + | |[https://github.com/geoschem/geos-chem/milestone/16?closed=1 '''Milestone 12.9.3'''] |
| − | #[[GEOS-Chem v8-02-04#Minor bug fix in gamap_mod.f|Minor bug fix in gamap_mod.f]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Fixes and updates in seasalt_mod.f|Fixes and updates in seasalt_mod.f]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Bug fix in emfossil.f for 0.5 x 0.666 nested grid tagged-CO option|Bug fix in emfossil.f for 0.5 x 0.666 nested grid tagged-CO option]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Bug fix in DIAG20 (diag_pl_mod.f)|Bug fix in DIAG20 (diag_pl_mod.f)]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Div-by-zero error encountered in arsl1k.f|Div-by-zero error encountered in arsl1k.f]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Fix for diagnostic arrays in TPCORE|Fix for diagnostic arrays in TPCORE]]
| + | |
| − | #[[GEOS-Chem v8-02-04#MEGAN now uses MODIS LAI by default|MEGAN now uses MODIS LAI by default]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:29, 23 February 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.9.2|12.9.2]] |
| | + | |24 Jul 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/15?closed=1 '''Milestone 12.9.2'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-03 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.9.1|12.9.1]] |
| | + | |17 Jul 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/14?closed=1 '''Milestone 12.9.1'''] |
| | | | |
| − | #[[GEOS-Chem v8-02-03#Patch for KPP for v8-02-03|Patch for KPP solver for v8-02-03]]
| + | |-valign="top" |
| − | #[[GEOS-Chem_v8-02-03#Corrected Bond et al BC.2FOC_emissions|Corrected Bond et al BC/OC emissions]]
| + | |[[GEOS-Chem 12#12.9.0|12.9.0]] |
| − | #[[GEOS-Chem_v8-02-03#Several_bug_fixes_in_sulfate_mod.f|Several bug fixes in sulfate_mod.f]]
| + | |17 Jul 2020 |
| − | #[[GEOS-Chem_v8-02-03#Missing_NOx_data_in_S.E.-Asia|Missing NOx data in S.E.-Asia]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem_v8-02-03#Mis-calculation_of_Courant_numbers_in_tpcore_fvdas_mod.f90|Mis-calculation of Courant numbers in tpcore_fvdas_mod.f90]]
| + | |[https://github.com/geoschem/geos-chem/milestone/10?closed=1 '''Milestone 12.9.0'''] |
| − | #[[GEOS-Chem_v8-02-03#Format_problem_in_planeflight_mod.f|Format problem in planeflight_mod.f]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:55, 4 February 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.8.2|12.8.2]] |
| | + | |27 May 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/13?closed=1 '''Milestone 12.8.2'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-02 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.8.1|12.8.1]] |
| | + | |21 May 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/12?closed=1 '''Milestone 12.8.1'''] |
| | | | |
| − | #[[GEOS-Chem_v8-02-02#EPA.2FNEI_inventory:_reset_other_species_to_zero|EPA/NEI inventory: reset other species to zero]]
| + | |-valign="top" |
| − | #[[GEOS-Chem_v8-02-02#Scale_factor_for_oceanic_acetone_for_GEOS5_2x2.5|Scale factor for oceanic acetone for GEOS5 2x2.5]] was fixed in GEOS-Chem v8-02-02.
| + | |[[GEOS-Chem 12#12.8.0|12.8.0]] |
| − | #[[GEOS-Chem_v8-02-02#Bug_with_PRIVATE_declaration_in_sulfate_mod.f|Bug with PRIVATE declaration in sulfate_mod.f]]
| + | |04 Mar 2020 |
| − | #[[GEOS-Chem_v8-02-02#Bug_with_online_2ndary_aerosol|Bug with online 2ndary aerosol]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem v8-02-02#Typo in HO2 uptake|Typo in HO2 uptake]]
| + | |[https://github.com/geoschem/geos-chem/milestone/7?closed=1 '''Milestone 12.8.0'''] |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:40, 11 January 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.7.2|12.7.2]] |
| | + | |09 Mar 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/11?closed=1 '''Milestone 12.7.2'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-01 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.7.1|12.7.1]] |
| | + | |19 Feb 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/9?closed=1 '''Milestone 12.7.1'''] |
| | | | |
| − | #[[GEOS-Chem_v8-02-01#Output selected tracers only for dry and wet deposition, convection and rain diagnotics|Output selected tracers only for dry and wet deposition, convection and rain diagnotics]]
| + | |-valign="top" |
| − | #[[GEOS-Chem_v8-02-01#On-the-fly regridding for 0.5x0.667 nested grids|On-the-fly regridding for 0.5x0.667 nested grids]]
| + | |[[GEOS-Chem 12#12.7.0|12.7.0]] |
| − | #[[GEOS-Chem_v8-02-01#Bug with EMEP ship emissions for nested grids|Bug with EMEP ship emissions for nested grids]]
| + | |03 Feb 2020 |
| − | #[[GEOS-Chem_v8-02-01#Bug in sulfate_mod.f to turn off biomass emissions|Bug in sulfate_mod.f to turn off biomass emissions]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem_v8-02-01#Minor error in gamap_mod.f|Minor error in gamap_mod.f]]
| + | |[https://github.com/geoschem/geos-chem/milestone/4?closed=1 '''Milestone 12.7.0'''] |
| − | #[[GEOS-Chem_v8-02-01#Bug fix for Streets emissions on 0.5x0.666 nested grid|Bug fix for Streets emissions on 0.5x0.666 nested grid]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 09:55, 12 January 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.6.3|12.6.3]] |
| | + | |25 Nov 2019 |
| | + | |[https://github.com/geoschem/gchp geoschem/gchp] |
| | + | |[https://github.com/geoschem/gchp/milestone/2?closed=1 '''Milestone 12.6.3'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-01-04 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.6.2|12.6.2]] |
| | + | |15 Nov 2019 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/6?closed=1 '''Milestone 12.6.2'''] |
| | | | |
| − | #[[GEOS-Chem_v8-01-04#Seg fault in GEOS-5 China nested grid simulation|Seg fault in GEOS-5 China nested grid simulation]]
| + | |-valign="top" |
| − | #[[GEOS-Chem_v8-01-04#Error message in partition.f|Error message in partition.f]]
| + | |[[GEOS-Chem 12#12.6.1|12.6.1]] |
| − | #[[GEOS-Chem_v8-01-04#Erroneous O3 diagnostic (ND45)|Erroneous O3 diagnostic (ND45)]]
| + | |28 Oct 2019 |
| − | #[[GEOS-Chem_v8-01-04#Post-Release Patches|Post-Release Patches]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/5?closed=1 '''Milestone 12.6.1'''] |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 09:58, 12 January 2010 (EST) | + | |-valign="top" |
| | + | |width="80px"|[[GEOS-Chem 12#12.6.0|12.6.0]] |
| | + | |width="100px"|18 Oct 2019 |
| | + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/2?closed=1 '''Milestone 12.6.0'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-01-03 ==
| + | |} |
| | | | |
| − | #[[GEOS-Chem_v8-01-03#TPCORE replaced with version based on GMI model|TPCORE replaced with version based on GMI model]]
| + | == Bugs and fixes in older GEOS-Chem versions == |
| − | #[[GEOS-Chem_v8-01-03#Output of ND51 does not match output in the ctm.bpch file|Output of ND51 does not match output in the ctm.bpch file]]
| + | |
| − | #[[GEOS-Chem_v8-01-03#ND22 (J-value) diagnostic|ND22 (J-value) diagnostic]]
| + | |
| − | #[[GEOS-Chem_v8-01-03#ND34 (biofuel emissions) diagnostic|ND34 (biofuel emissions) diagnostic]]
| + | |
| − | #[[GEOS-Chem v8-01-03#Change of location of calls to diagnostics in main.f|Change of location of calls to diagnostics in main.f]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 10:29, 12 January 2010 (EST) | + | For a complete list of bugs and fixes in older GEOS-Chem versions, please see: |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-01-02 ==
| + | *[[Bugs and fixes in GEOS-Chem 12.0.0 to 12.5.0]] |
| | + | *[[Bugs and fixes in GEOS-Chem v9, v10, and v11]] |
| | + | *[[Bugs and fixes in GEOS-Chem v7 and v8]] |
| | | | |
| − | #[[GEOS-Chem v8-01-02#Quick fix for GEOS-5 optical depth|Quick fix for GEOS-5 optical depth]]
| + | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 14:23, 22 March 2021 (UTC) |
| − | #*Please see the discussion [[GEOS-5_issues#GEOS-5 update and clarification|about this quick fix for the GEOS-5 optical depths]].
| + | |
| − | #*'''''NOTE: if you are using [[GEOS-Chem v8-01-04]] or higher with the [[GEOS-5_issues#Solution|reprocessed GEOS-5 met fields]], then you do not need to use this quick fix.'''''
| + | |
| − | #[[GEOS-Chem v8-01-02#Corrected labeling of SOA quantities in carbon_mod.f|Corrected labeling of SOA quantities in carbon_mod.f]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Double-substitution error in GET_ALK|Double-substitution error in GET_ALK]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Robustness fix for reading anthropogenic SO2 and NH3|Robustness fix for reading anthropogenic SO2 and NH3]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Minor bug in gasconc.f & calcrate.f|Minor bug in gasconc.f & calcrate.f]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Minor bug in emfossil.f|Minor bug in emfossil.f]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Fix for mass balance of HNO3 and NIT|Fix for mass balance of HNO3 and NIT]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Bug in ND43|Bug in ND43]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Problem w/ ND65 diagnostic and dynamic tropopause|Problem w/ ND65 diagnostic and dynamic tropopause]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Albedo diagnostic in GEOS-4|Albedo diagnostic in GEOS-4]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Pressure diagnostic : PS-PTOP vs. PEDGE|Pressure diagnostic : PS-PTOP vs. PEDGE]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Minor bug in log file output|Minor bug in log file output]]
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| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:29, 12 January 2010 (EST) | + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v8-01-01 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem v8-01-01#Post-release patches|Post-release patches]]
| + | |
| − | #[[GEOS-Chem v8-01-01#Fixes for offline simulations|Fixes for offline simulations]]
| + | |
| − | #[[GEOS-Chem v8-01-01#Bugs in ND47/ND65/ND45 in v8-01-01|Bugs in ND47/ND65/ND45 in v8-01-01]]
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| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:35, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v7-04-13 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem v7-04-13#regrid_1x1_mod.f|Error in regrid_1x1_mod.f]]
| + | |
| − | #[[GEOS-Chem v7-04-13#smvgear.f|Error in smvgear.f]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:49, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v7-04-10 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem v7-04-10#NaN's in smvgear.f|NaN's in smvgear.f]]
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| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:53, 12 January 2010 (EST)
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| − | | + | |
| − | == Other issues ==
| + | |
| − | | + | |
| − | === ND05 diagnostic quantities zeroed unexpectedly ===
| + | |
| − | | + | |
| − | '''''Helen McIntyre wrote:'''''
| + | |
| − | :I'm running the new and old versions of GEOS-Chem, and both seem to not output all the ND05 diagnostics correctly. There are 10 prod/loss diagnostics in this category, but only the 5th, 6th and 7th work. All the rest come out as zero.
| + | |
| − | | + | |
| − | :I've had a brief look though the code, and it seems that the ones that work are calculated in one part of the routine (<tt>sulfate_mod.f</tt>), and the zero ones in another (I don't know if this has anything to do with it).
| + | |
| − | | + | |
| − | :I've just done a 1 day run, with [[GEOS-Chem v8-01-01]] at 4x5 resolution using GEOS-5 met fields. The old version I'm using is v7-02-04 and I get the same result.
| + | |
| − | | + | |
| − | :The 'ctm.bpch', 'geos.log' and 'input.geos' files from the v8-01-01 run can be found here: http://homepages.see.leeds.ac.uk/~lechlm/files/
| + | |
| − | | + | |
| − | '''''Claire Carouge replied:'''''
| + | |
| − | | + | |
| − | :There are some problems in the calculations. For the 5th element of AD05 (in Fortran notations and not IDL), the diagnostic come from the value of L1 which is calculated line 1529 (v8-01-04):
| + | |
| − | | + | |
| − | L1 = ( SO20 - SO2_cd + PSO2_DMS(I,J,L) ) * RK1/RK
| + | |
| − | | + | |
| − | :But on line 1508, we have:
| + | |
| − | | + | |
| − | RK1 = 0.d0
| + | |
| − | | + | |
| − | :with the previous comment:
| + | |
| − | | + | |
| − | ! For online runs, SMVGEAR deals w/ this computation,
| + | |
| − | ! so we can simply set RK1 = 0 (rjp, bmy, 3/23/03)
| + | |
| − | | + | |
| − | :So L1 is always 0. I have no idea what RK1 is for, you may have to go into the physics/chemistry behind the code and we are not qualified to help you with it.
| + | |
| − | | + | |
| − | :The other values for AD05 are calculated in the routine CHEM_DMS and this routine is only called in an offline aerosol simulation (l. 545 in <tt>sulfate_mod.f</tt>).
| + | |
| − | | + | |
| − | :So my guess is that the ND05 diagnostic was designed for offline simulations and if you want it for online chemistry, you need to implement it.
| + | |
| − | | + | |
| − | === Bad GEOS-4 A6 met data causing segmentation fault ===
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| − | | + | |
| − | Please see [[GMAO_GEOS-4#Bad GEOS-4 A6 met data causing segmentation fault|this post about bad GEOS-4 A6 met data causing a segmentation fault]] in GEOS-Chem simulations.
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| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 15:19, 16 February 2010 (EST)
| + | |
| − | | + | |
| − | === Too many levels in photolysis code ===
| + | |
| − | | + | |
| − | Please see [[Photolysis mechanism#Too many levels in photolysis code|this discussion about the "Too many levels in photolysis code" error]] that can sometimes happen in the FAST-J photolysis code.
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| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 11:05, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | === Negative tracer in routine WETDEP ===
| + | |
| − | | + | |
| − | See this post: [[GEOS-5 issues#Small negative RH value in 20060206.a6.2x25 file|Small negative RH value in in 20060206.a6.2x25 file]]. This has been corrected in [[GEOS-Chem v8-01-02]] and higher versions.
| + | |
| − | | + | |
| − | Also see [[Wet_deposition#Negative_tracer_in_routine_WETDEP|this post]] for more information.
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| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 14:48, 31 March 2011 (EDT)
| + | |
| − | | + | |
| − | === ISORROPIA and RPMARES ===
| + | |
| − | | + | |
| − | Please see the discussion about the bugs & fixes for ISORROPIA and RPMARES on the Code Developer's Forum for [[Aerosol thermodynamical equilibrium]].
| + | |
| − | | + | |
| − | Also, if you are trying to run an aerosol-only simulation, then please see [[Aerosol thermodynamical equilibrium#Bug in sulfate_mod.f caused by switch to RPMARES|this discussion about a bug that manifested itself only after switching from ISORROPIA to RPMARES]].
| + | |
| − | | + | |
| − | '''''NOTE: We have switched from RPMARES to [[ISORROPIA II]] in [[GEOS-Chem v8-03-01]] and higher versions. This eliminates the problems that ISORROPIA I exhibited at low RH values.'''''
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 14:48, 31 March 2011 (EDT)
| + | |
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there.
