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| − | On this page we list the GEOS-Chem bugs that users have recently encountered, and how to fix them. | + | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-03-02 == | + | == Bugs and fixes lists have now been migrated to Github == |
| | | | |
| − | * [[GEOS-Chem v8-03-02#Fix for EPA/NEI 2005 emissions|Fix for EPA/NEI 2005 emissions]]
| + | We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there. |
| − | * [[GEOS-Chem v8-03-02#Minor fixes in gamap_mod.f|Minor fixes in gamap_mod.f]]
| + | |
| − | * [[GEOS-Chem v8-03-02#Bug fix for ND42 diagnostic and ISORROPIA II|Bug fix for ND42 diagnostic and ISORROPIA II]]
| + | |
| − | * [[GEOS-Chem v8-03-02#Minor fix for AOD calculation|Minor fix for AOD calculation]]
| + | |
| − | * [[GEOS-Chem v8-03-02#Avoid using unallocated arrays in edgar_mod.f|Avoid using unallocated arrays in edgar_mod.f]]
| + | |
| − | * [[GEOS-Chem v8-03-02#Transport fix for GEOS-5 nested grid simulations|Transport fix for GEOS-5 nested grid simulations]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:53, 7 September 2010 (EDT) | + | === GEOS-Chem 13 === |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-03-01 == | + | {| border=1 cellspacing=0 cellpadding=5 |
| | + | |-bgcolor="#CCCCCC" |
| | + | !Version |
| | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| − | '''''NOTE: [[GEOS-Chem v8-03-01]] refers to the version that was previously noted as GEOS-Chem v8-02-05.
| + | |-valign="top" |
| | + | |[[GEOS-Chem_model_development_priorities#13.3.0|13.3.0]] |
| | + | |TBD |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/19 '''Milestone 13.3.0'''] |
| | | | |
| − | * [[GEOS-Chem v8-03-01#Patch to enable call to SOA PARA INIT|Patch to enable call to SOA PARA INIT]]
| + | |-valign="top" |
| − | * [[GEOS-Chem v8-03-01#Patch to fix declaration of IONIC in ISORROPIA_II|Patch to fix declaration of IONIC in ISORROPIA_II]]
| + | |[[GEOS-Chem_model_development_priorities#13.2.0|13.2.0]] |
| − | * [[GEOS-Chem v8-03-01#Patch to fix bug in Aromatic SOA|Patch to fix bug in Aromatic SOA]]
| + | |TBD |
| − | * [[GEOS-Chem v8-03-01#Patch to scale AOD diagnostic output to other wavelengths|Patch to scale AOD diagnostic output to other wavelengths]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | * [[GEOS-Chem v8-03-01#Photolysis now computed at midpoint of chemistry timestep|Photolysis now computed at midpoint of chemistry timestep]]
| + | |[https://github.com/geoschem/geos-chem/milestone/18 '''Milestone 13.2.0'''] |
| − | * [[GEOS-Chem v8-03-01#Bug fix in ISORROPIA for offline aerosol|Bug fix in ISORROPIA for offline aerosol]]
| + | |
| − | * [[GEOS-Chem v8-03-01#Minor bug fix in SRCSO2|Minor bug fix in SRCSO2 ]]
| + | |
| − | * [[GEOS-Chem v8-03-01#Bug in GET EMMONOT MEGAN|Bug in GET_EMMONOT_MEGAN]]
| + | |
| − | * [[GEOS-Chem v8-03-01#Bug in READ_ANTHRO_NH3|Bug in READ_ANTHRO_NH3]]
| + | |
| − | * [[GEOS-Chem v8-03-01#Fix for initialization of EMEP ship emissions|Fix for initialization of EMEP ship emissions]]
| + | |
| − | * [[GEOS-Chem v8-03-01#Bug fix in AVGPOLE|Bug fix in AVGPOLE]]
| + | |
| − | * [[GEOS-Chem v8-03-01#Bug fix in EMITHIGH (carbon_mod.f)|Bug fix in EMITHIGH (carbon_mod.f)]]
| + | |
| − | * [[GEOS-Chem v8-03-01#Fix to prevent numerical overflow in EXP function|Fix to prevent numerical overflow in EXP function]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 15:05, 30 June 2010 (EDT) | + | |-valign="top" |
| | + | |[[GEOS-Chem 13.1.0|13.1.0]] |
| | + | |TBD |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/17 '''Milestone 13.1.0'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-04 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 13.0.2|13.0.2]] |
| | + | |12 Apr 2021 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/21?closed=1 '''Milestone 13.0.2'''] |
| | | | |
| − | * [[GEOS-Chem v8-02-04#Memory issue with KPP|Memory issue with KPP]]
| + | |-valign="top" |
| − | * [[GEOS-Chem v8-02-04#Updated reactions in sulfate_mod.f|Updated reactions in sulfate_mod.f]]
| + | |[[GEOS-Chem 13.0.1|13.0.1]] |
| − | * [[GEOS-Chem v8-02-04#Bug fix for EMEP ship emissions|Bug fix for EMEP ship emissions]]
| + | |23 Mar 2021 |
| − | * [[GEOS-Chem v8-02-04#Minor fix for molecular weights in drydep_mod.f|Minor fix for molecular weights in drydep_mod.f]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | * [[GEOS-Chem v8-02-04#Bug fix in biomass_mod.f|Bug fix in biomass_mod.f]]
| + | |[https://github.com/geoschem/geos-chem/milestone/20?closed=1 '''Milestone 13.0.1'''] |
| − | * [[GEOS-Chem v8-02-04#Minor bug fix in gamap_mod.f|Minor bug fix in gamap_mod.f]]
| + | |
| − | * [[GEOS-Chem v8-02-04#Fixes and updates in seasalt_mod.f|Fixes and updates in seasalt_mod.f]]
| + | |
| − | * [[GEOS-Chem v8-02-04#Bug fix in emfossil.f for 0.5 x 0.666 nested grid tagged-CO option|Bug fix in emfossil.f for 0.5 x 0.666 nested grid tagged-CO option]]
| + | |
| − | * [[GEOS-Chem v8-02-04#Bug fix in DIAG20 (diag_pl_mod.f)|Bug fix in DIAG20 (diag_pl_mod.f)]]
| + | |
| − | * [[GEOS-Chem v8-02-04#Div-by-zero error encountered in arsl1k.f|Div-by-zero error encountered in arsl1k.f]]
| + | |
| − | * [[GEOS-Chem v8-02-04#Fix for diagnostic arrays in TPCORE|Fix for diagnostic arrays in TPCORE]]
| + | |
| − | * [[GEOS-Chem v8-02-04#MEGAN now uses MODIS LAI by default|MEGAN now uses MODIS LAI by default]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:29, 23 February 2010 (EST) | + | |-valign="top" |
| | + | |width="80px"|[[GEOS-Chem 13.0.0|13.0.0]] |
| | + | |width="100px"|18 Mar 2021 |
| | + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/8?closed=1 '''Milestone 13.0.0'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-03 ==
| + | |} |
| | | | |
| − | * [[GEOS-Chem v8-02-03#Patch for KPP for v8-02-03|Patch for KPP solver for v8-02-03]]
| + | === GEOS-Chem 12 === |
| − | * [[GEOS-Chem_v8-02-03#Corrected Bond et al BC.2FOC_emissions|Corrected Bond et al BC/OC emissions]]
| + | |
| − | * [[GEOS-Chem_v8-02-03#Several_bug_fixes_in_sulfate_mod.f|Several bug fixes in sulfate_mod.f]]
| + | |
| − | * [[GEOS-Chem_v8-02-03#Missing_NOx_data_in_S.E.-Asia|Missing NOx data in S.E.-Asia]]
| + | |
| − | * [[GEOS-Chem_v8-02-03#Mis-calculation_of_Courant_numbers_in_tpcore_fvdas_mod.f90|Mis-calculation of Courant numbers in tpcore_fvdas_mod.f90]]
| + | |
| − | * [[GEOS-Chem_v8-02-03#Format_problem_in_planeflight_mod.f|Format problem in planeflight_mod.f]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:55, 4 February 2010 (EST) | + | {| border=1 cellspacing=0 cellpadding=5 |
| | + | |-bgcolor="#CCCCCC" |
| | + | !Version |
| | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-02 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.9.3|12.9.3]] |
| | + | |06 Aug 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/16?closed=1 '''Milestone 12.9.3'''] |
| | | | |
| − | * [[GEOS-Chem_v8-02-02#EPA.2FNEI_inventory:_reset_other_species_to_zero|EPA/NEI inventory: reset other species to zero]]
| + | |-valign="top" |
| − | * [[GEOS-Chem_v8-02-02#Scale_factor_for_oceanic_acetone_for_GEOS5_2x2.5|Scale factor for oceanic acetone for GEOS5 2x2.5]] was fixed in GEOS-Chem v8-02-02.
| + | |[[GEOS-Chem 12#12.9.2|12.9.2]] |
| − | * [[GEOS-Chem_v8-02-02#Bug_with_PRIVATE_declaration_in_sulfate_mod.f|Bug with PRIVATE declaration in sulfate_mod.f]]
| + | |24 Jul 2020 |
| − | * [[GEOS-Chem_v8-02-02#Bug_with_online_2ndary_aerosol|Bug with online 2ndary aerosol]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | * [[GEOS-Chem v8-02-02#Typo in HO2 uptake|Typo in HO2 uptake]]
| + | |[https://github.com/geoschem/geos-chem/milestone/15?closed=1 '''Milestone 12.9.2'''] |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:40, 11 January 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.9.1|12.9.1]] |
| | + | |17 Jul 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/14?closed=1 '''Milestone 12.9.1'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-01 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.9.0|12.9.0]] |
| | + | |17 Jul 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/10?closed=1 '''Milestone 12.9.0'''] |
| | | | |
| − | * [[GEOS-Chem_v8-02-01#Output selected tracers only for dry and wet deposition, convection and rain diagnotics|Output selected tracers only for dry and wet deposition, convection and rain diagnotics]]
| + | |-valign="top" |
| − | * [[GEOS-Chem_v8-02-01#On-the-fly regridding for 0.5x0.667 nested grids|On-the-fly regridding for 0.5x0.667 nested grids]]
| + | |[[GEOS-Chem 12#12.8.2|12.8.2]] |
| − | * [[GEOS-Chem_v8-02-01#Bug with EMEP ship emissions for nested grids|Bug with EMEP ship emissions for nested grids]]
| + | |27 May 2020 |
| − | * [[GEOS-Chem_v8-02-01#Bug in sulfate_mod.f to turn off biomass emissions|Bug in sulfate_mod.f to turn off biomass emissions]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | * [[GEOS-Chem_v8-02-01#Minor error in gamap_mod.f|Minor error in gamap_mod.f]]
| + | |[https://github.com/geoschem/geos-chem/milestone/13?closed=1 '''Milestone 12.8.2'''] |
| − | * [[GEOS-Chem_v8-02-01#Bug fix for Streets emissions on 0.5x0.666 nested grid|Bug fix for Streets emissions on 0.5x0.666 nested grid]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 09:55, 12 January 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.8.1|12.8.1]] |
| | + | |21 May 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/12?closed=1 '''Milestone 12.8.1'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-01-04 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.8.0|12.8.0]] |
| | + | |04 Mar 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/7?closed=1 '''Milestone 12.8.0'''] |
| | | | |
| − | * [[GEOS-Chem_v8-01-04#Seg fault in GEOS-5 China nested grid simulation|Seg fault in GEOS-5 China nested grid simulation]]
| + | |-valign="top" |
| − | * [[GEOS-Chem_v8-01-04#Error message in partition.f|Error message in partition.f]]
| + | |[[GEOS-Chem 12#12.7.2|12.7.2]] |
| − | * [[GEOS-Chem_v8-01-04#Erroneous O3 diagnostic (ND45)|Erroneous O3 diagnostic (ND45)]]
| + | |09 Mar 2020 |
| − | * [[GEOS-Chem_v8-01-04#Post-Release Patches|Post-Release Patches]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/11?closed=1 '''Milestone 12.7.2'''] |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 09:58, 12 January 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.7.1|12.7.1]] |
| | + | |19 Feb 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/9?closed=1 '''Milestone 12.7.1'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-01-03 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.7.0|12.7.0]] |
| | + | |03 Feb 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/4?closed=1 '''Milestone 12.7.0'''] |
| | | | |
| − | * [[GEOS-Chem_v8-01-03#TPCORE replaced with version based on GMI model|TPCORE replaced with version based on GMI model]]
| + | |-valign="top" |
| − | * [[GEOS-Chem_v8-01-03#Output of ND51 does not match output in the ctm.bpch file|Output of ND51 does not match output in the ctm.bpch file]]
| + | |[[GEOS-Chem 12#12.6.3|12.6.3]] |
| − | * [[GEOS-Chem_v8-01-03#ND22 (J-value) diagnostic|ND22 (J-value) diagnostic]]
| + | |25 Nov 2019 |
| − | * [[GEOS-Chem_v8-01-03#ND34 (biofuel emissions) diagnostic|ND34 (biofuel emissions) diagnostic]]
| + | |[https://github.com/geoschem/gchp geoschem/gchp] |
| − | * [[GEOS-Chem v8-01-03#Change of location of calls to diagnostics in main.f|Change of location of calls to diagnostics in main.f]]
| + | |[https://github.com/geoschem/gchp/milestone/2?closed=1 '''Milestone 12.6.3'''] |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 10:29, 12 January 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.6.2|12.6.2]] |
| | + | |15 Nov 2019 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/6?closed=1 '''Milestone 12.6.2'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-01-02 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.6.1|12.6.1]] |
| | + | |28 Oct 2019 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/5?closed=1 '''Milestone 12.6.1'''] |
| | | | |
| − | * [[GEOS-Chem v8-01-02#Quick fix for GEOS-5 optical depth|Quick fix for GEOS-5 optical depth]]
| + | |-valign="top" |
| − | **Please see the discussion [[GEOS-5_issues#GEOS-5 update and clarification|about this quick fix for the GEOS-5 optical depths]].
| + | |width="80px"|[[GEOS-Chem 12#12.6.0|12.6.0]] |
| − | **'''''NOTE: if you are using [[GEOS-Chem v8-01-04]] or higher with the [[GEOS-5_issues#Solution|reprocessed GEOS-5 met fields]], then you do not need to use this quick fix.'''''
| + | |width="100px"|18 Oct 2019 |
| − | * [[GEOS-Chem v8-01-02#Corrected labeling of SOA quantities in carbon_mod.f|Corrected labeling of SOA quantities in carbon_mod.f]]
| + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | * [[GEOS-Chem v8-01-02#Double-substitution error in GET_ALK|Double-substitution error in GET_ALK]]
| + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/2?closed=1 '''Milestone 12.6.0'''] |
| − | * [[GEOS-Chem v8-01-02#Robustness fix for reading anthropogenic SO2 and NH3|Robustness fix for reading anthropogenic SO2 and NH3]]
| + | |
| − | * [[GEOS-Chem v8-01-02#Minor bug in gasconc.f & calcrate.f|Minor bug in gasconc.f & calcrate.f]]
| + | |
| − | * [[GEOS-Chem v8-01-02#Minor bug in emfossil.f|Minor bug in emfossil.f]]
| + | |
| − | * [[GEOS-Chem v8-01-02#Fix for mass balance of HNO3 and NIT|Fix for mass balance of HNO3 and NIT]]
| + | |
| − | * [[GEOS-Chem v8-01-02#Bug in ND43|Bug in ND43]]
| + | |
| − | * [[GEOS-Chem v8-01-02#Problem w/ ND65 diagnostic and dynamic tropopause|Problem w/ ND65 diagnostic and dynamic tropopause]]
| + | |
| − | * [[GEOS-Chem v8-01-02#Albedo diagnostic in GEOS-4|Albedo diagnostic in GEOS-4]]
| + | |
| − | * [[GEOS-Chem v8-01-02#Pressure diagnostic : PS-PTOP vs. PEDGE|Pressure diagnostic : PS-PTOP vs. PEDGE]]
| + | |
| − | * [[GEOS-Chem v8-01-02#Minor bug in log file output|Minor bug in log file output]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 10:29, 12 January 2010 (EST)
| + | |} |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-01-01 == | + | == Bugs and fixes in older GEOS-Chem versions == |
| | | | |
| − | * [[GEOS-Chem v8-01-01#Post-release patches|Post-release patches]]
| + | For a complete list of bugs and fixes in older GEOS-Chem versions, please see: |
| − | * [[GEOS-Chem v8-01-01#Fixes for offline simulations|Fixes for offline simulations]]
| + | |
| − | * [[GEOS-Chem v8-01-01#Bugs in ND47/ND65/ND45 in v8-01-01|Bugs in ND47/ND65/ND45 in v8-01-01]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 10:35, 12 January 2010 (EST)
| + | *[[Bugs and fixes in GEOS-Chem 12.0.0 to 12.5.0]] |
| | + | *[[Bugs and fixes in GEOS-Chem v9, v10, and v11]] |
| | + | *[[Bugs and fixes in GEOS-Chem v7 and v8]] |
| | | | |
| − | == Issues resolved in GEOS-Chem v7-04-13 ==
| + | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 14:23, 22 March 2021 (UTC) |
| − | | + | |
| − | * [[GEOS-Chem v7-04-13#regrid_1x1_mod.f|Error in regrid_1x1_mod.f]]
| + | |
| − | * [[GEOS-Chem v7-04-13#smvgear.f|Error in smvgear.f]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:49, 12 January 2010 (EST) | + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v7-04-10 ==
| + | |
| − | | + | |
| − | * [[GEOS-Chem v7-04-10#NaN's in smvgear.f|NaN's in smvgear.f]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:53, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | == ND05 diagnostic quantities zeroed unexpectedly ==
| + | |
| − | | + | |
| − | '''''Helen McIntyre (h.macintyre@see.leeds.ac.uk) wrote:'''''
| + | |
| − | :I'm running the new and old versions of GEOS-Chem, and both seem to not output all the ND05 diagnostics correctly. There are 10 prod/loss diagnostics in this category, but only the 5th, 6th and 7th work. All the rest come out as zero.
| + | |
| − | | + | |
| − | :I've had a brief look though the code, and it seems that the ones that work are calculated in one part of the routine (<tt>sulfate_mod.f</tt>), and the zero ones in another (I don't know if this has anything to do with it).
| + | |
| − | | + | |
| − | :I've just done a 1 day run, with [[GEOS-Chem v8-01-01]] at 4x5 resolution using GEOS-5 met fields. The old version I'm using is v7-02-04 and I get the same result.
| + | |
| − | | + | |
| − | :The 'ctm.bpch', 'geos.log' and 'input.geos' files from the v8-01-01 run can be found here: http://homepages.see.leeds.ac.uk/~lechlm/files/
| + | |
| − | | + | |
| − | '''''Claire Carouge (ccarouge@seas.harvard.edu) replied:'''''
| + | |
| − | | + | |
| − | :There are some problems in the calculations. For the 5th element of AD05 (in Fortran notations and not IDL), the diagnostic come from the value of L1 which is calculated line 1529 (v8-01-04):
| + | |
| − | | + | |
| − | L1 = ( SO20 - SO2_cd + PSO2_DMS(I,J,L) ) * RK1/RK
| + | |
| − | | + | |
| − | :But on line 1508, we have:
| + | |
| − | | + | |
| − | RK1 = 0.d0
| + | |
| − | | + | |
| − | :with the previous comment:
| + | |
| − | | + | |
| − | ! For online runs, SMVGEAR deals w/ this computation,
| + | |
| − | ! so we can simply set RK1 = 0 (rjp, bmy, 3/23/03)
| + | |
| − | | + | |
| − | :So L1 is always 0. I have no idea what RK1 is for, you may have to go into the physics/chemistry behind the code and we are not qualified to help you with it.
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| − | :The other values for AD05 are calculated in the routine CHEM_DMS and this routine is only called in an offline aerosol simulation (l. 545 in <tt>sulfate_mod.f</tt>).
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| − | :So my guess is that the ND05 diagnostic was designed for offline simulations and if you want it for online chemistry, you need to implement it.
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| − | == Bad GEOS-4 A6 met data causing segmentation fault ==
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| − | Please see [[GMAO_GEOS-4#Bad GEOS-4 A6 met data causing segmentation fault|this post about bad GEOS-4 A6 met data causing a segmentation fault]] in GEOS-Chem simulations.
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| − | --[[User:Bmy|Bob Y.]] 15:19, 16 February 2010 (EST)
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| − | == Too many levels in photolysis code ==
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| − | Please see [[Photolysis mechanism#Too many levels in photolysis code|this discussion about the "Too many levels in photolysis code" error]] that can sometimes happen in the FAST-J photolysis code.
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| − | --[[User:Bmy|Bob Y.]] 11:05, 12 January 2010 (EST)
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| − | == Negative tracer in routine WETDEP because of negative RH ==
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| − | See this post: [[GEOS-5 issues#Small negative RH value in 20060206.a6.2x25 file]]
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| − | Fixes are available at [ftp://ftp.as.harvard.edu/pub/geos-chem/patches/v8-01-01/ ftp://ftp.as.harvard.edu/pub/geos-chem/patches/v8-01-01].
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| − | --[[User:Plesager|phs]] 16:31, 6 June 2008 (EDT)
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| − | == Negative tracer in routine WETDEP ==
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| − | Please see [[Wet_deposition#Negative_tracer_in_routine_WETDEP|this post]] for more information.
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| − | --[[User:Bmy|Bob Y.]] 14:25, 16 February 2010 (EST)
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| − | == ISORROPIA and RPMARES ==
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| − | Please see the discussion about the bugs & fixes for ISORROPIA and RPMARES on the Code Developer's Forum for [[Aerosol thermodynamical equilibrium]].
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| − | Also, if you are trying to run an aerosol-only simulation, then please see [[Aerosol thermodynamical equilibrium#Bug in sulfate_mod.f caused by switch to RPMARES|this discussion about a bug that manifested itself only after switching from ISORROPIA to RPMARES]].
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| − | '''''NOTE''''': We will upgrade to [[ISORROPIA II]] in [[GEOS-Chem v8-02-05]]. This will eliminate the problems that ISORROPIA I exhibited at low RH values.
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| − | --[[User:Bmy|Bob Y.]] 14:25, 16 February 2010 (EST)
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On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there.
