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| | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. | | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. |
| | | | |
| − | Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more general information about some frequently encountered errors. Also visit our [[Currently unresolved issues in GEOS-Chem]] and [[Known issues caused by compiler bugs]] wiki pages for more information about unresolved issues.
| + | == Bugs and fixes lists have now been migrated to Github == |
| | | | |
| − | == Issues resolved in GEOS-Chem 12.1.0 ==
| + | We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there. |
| | | | |
| − | The bugs and technical issues listed below were resolved in [[GEOS-Chem 12#12.1.0|GEOS-Chem 12.1.0]].
| + | === GEOS-Chem 13 === |
| | | | |
| − | {| border=1 cellspacing=0 cellpadding=5 | + | {| border=1 cellspacing=0 cellpadding=5 |
| | |-bgcolor="#CCCCCC" | | |-bgcolor="#CCCCCC" |
| − | !width="250px"|Module or area | + | !Version |
| − | !width="750px"|Issue that was resolved | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |CH4 simulation | + | |[[GEOS-Chem_model_development_priorities#13.3.0|13.3.0]] |
| − | |
| + | |TBD |
| − | *[[CH4_simulation#Add_fixes_for_seasonal_scale_factors_in_CH4_simulations|Add fixes for seasonal scale factors in CH4 simulations]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/19 '''Milestone 13.3.0'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Chemistry and Photolysis | + | |[[GEOS-Chem_model_development_priorities#13.2.0|13.2.0]] |
| − | |
| + | |TBD |
| − | *[[#Allow_for_SZA_to_98_degrees_when_getting_photolysis_rates|Allow for SZA to 98 degrees when getting photolysis rates]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-Chem_v11-02#Code_cleanup_suggestions|Move Fast-JX .dat files from the <tt>geos-chem-unittest</tt> repository to <tt>gcgrid/ExtData</tt>]]
| + | |[https://github.com/geoschem/geos-chem/milestone/18 '''Milestone 13.2.0'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |CO2 simulation | + | |[[GEOS-Chem 13.1.0|13.1.0]] |
| − | |
| + | |TBD |
| − | *[[GEOS-Chem_12#Update_HEMCO_configuration_file_for_tagged_CO_simulation|Update HEMCO configuration file for the tagged CO simulation]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/17 '''Milestone 13.1.0'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Emissions | + | |[[GEOS-Chem 13.0.2|13.0.2]] |
| − | |Updates and fixes for the CEDS anthropogenic emissions inventory:
| + | |12 Apr 2021 |
| − | *[[CEDS_anthropogenic_emissions#Add_missing_RCO_sector_to_CEDS_emissions_entries|Add missing RCO sector to CEDS emissions entries]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[CEDS_anthropogenic_emissions#Include_CEDS_ship_emissions|Include CEDS ship emissions as default global ship emissions inventory]]
| + | |[https://github.com/geoschem/geos-chem/milestone/21?closed=1 '''Milestone 13.0.2'''] |
| − | *[[CEDS_anthropogenic_emissions#Reduce_file_size_for_CEDS_inventory|Reduce file size for CEDS inventory]]
| + | |
| − | | + | |
| − | HEMCO fixes:
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Bug_fix:_Read_data_with_the_.22E.22_cycle_flag_just_once|HEMCO bug fix: prevent excessive attempts to read the HEMCO restart file when using GEOS-Chem "Classic"]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Add_fix_for_collapsing_model_levels_to_reduced_grid|Add fix for collapsing model levels to reduced grid]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_unit_conversion_in_HCO_UNIT_GetAreaScal|Fix unit conversion in HCO_UNIT_GetAreaScal]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |PBL Mixing
| + | |
| − | |
| + | |
| − | *[[Boundary_layer_mixing#Mass_is_not_conserved_when_using_non-local_PBL_mixing|Fix mass conservation in non-local PBL mixing]]
| + | |
| − | | + | |
| − | |} | + | |
| − | | + | |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 21:24, 21 December 2018 (UTC)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem 12.0.2 == | + | |
| − | | + | |
| − | The bugs and technical issues listed below were be resolved in [[GEOS-Chem 12#12.0.2|GEOS-Chem 12.0.2]].
| + | |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | |
| − | |-bgcolor="#CCCCCC"
| + | |
| − | !width="250px"|Module or area
| + | |
| − | !width="750px"|Issue that was resolved
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Diagnostics | + | |[[GEOS-Chem 13.0.1|13.0.1]] |
| − | | | + | |23 Mar 2021 |
| − | *[[#Fixed_local-time_averaging_in_ND51_and_ND51b_satellite_timeseries_diagnostics|Fixed local-time averaging in ND51 and ND51b satellite timeseries diagnostics]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/20?closed=1 '''Milestone 13.0.1'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Specialty simulations | + | |width="80px"|[[GEOS-Chem 13.0.0|13.0.0]] |
| − | | | + | |width="100px"|18 Mar 2021 |
| − | *[[TOMAS_aerosol_microphysics#Fixes_for_missing_biomass_emissions_and_incorrect_aerosol_dry_deposition|Fixes to correct missing BC/OC biomass emissions and incorrect aerosol drydep in TOMAS simulations]]
| + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[CO2_simulation#CO2_emissions_are_double_counted|Avoid double-counting of emissions in the CO2 simulation]]
| + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/8?closed=1 '''Milestone 13.0.0'''] |
| | | | |
| | |} | | |} |
| | | | |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 21:25, 21 December 2018 (UTC) | + | === GEOS-Chem 12 === |
| | | | |
| − | == Issues resolved in GEOS-Chem 12.0.1 ==
| + | {| border=1 cellspacing=0 cellpadding=5 |
| − | | + | |
| − | The bugs and technical issues listed below were resolved in [[GEOS-Chem 12#12.0.1|GEOS-Chem 12.0.1]], which was released on 24 Aug 2018.
| + | |
| − | {| border=1 cellspacing=0 cellpadding=5 | + | |
| | |-bgcolor="#CCCCCC" | | |-bgcolor="#CCCCCC" |
| − | !width="250px"|Module or area | + | !Version |
| − | !width="750px"|Issue that was resolved | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Diagnostics | + | |[[GEOS-Chem 12#12.9.3|12.9.3]] |
| − | |
| + | |06 Aug 2020 |
| − | *[[#Fix typo when registering the State_Chm%SSAlk field|Fix typo when registering the <tt>State_Chm%SSAlk</tt> field]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Sulfate aerosols#Fix mis-indexing in the ND05 diagnostic|Fix mis-indexing in the ND05 diagnostic]]
| + | |[https://github.com/geoschem/geos-chem/milestone/16?closed=1 '''Milestone 12.9.3'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Mercury | + | |[[GEOS-Chem 12#12.9.2|12.9.2]] |
| − | |
| + | |24 Jul 2020 |
| − | *[[Mercury#Restore_biomass_emissions_and_do_not_double_count_anthropogenic_emissions|Fixes for the Hg specialty simualtion: Restore biomass emissions and do not double-count anthropogenic emissions]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/15?closed=1 '''Milestone 12.9.2'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Structural updates | + | |[[GEOS-Chem 12#12.9.1|12.9.1]] |
| − | |
| + | |17 Jul 2020 |
| − | *Nullify rather than deallocate 3D met arrays for compatibility with gfortran 6+ when using GCHP
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-Chem_Makefile_Structure#Add a more robust test for netCDF-Fortran in Makefile_header.mk|Add a more robust test for netCDF-Fortran in Makefile_header.mk]]
| + | |[https://github.com/geoschem/geos-chem/milestone/14?closed=1 '''Milestone 12.9.1'''] |
| − | *[[GNU_Fortran_compiler#Compiliation_issues_with_GNU_Fortran_8.2.0|Fix compilation issues encountered with GNU Fortran 8.2.0]]
| + | |
| − | *[[Intel_Fortran_Compiler#Compilation_issues_with_Intel_Fortran_18|Fix compilation issues encountered with Intel Fortran 18]]
| + | |
| − | | + | |
| − | |} | + | |
| − | | + | |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 16:53, 24 August 2018 (UTC) | + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem 12.0.0 ==
| + | |
| − | | + | |
| − | The bugs and technical issues listed below were resolved in [[GEOS-Chem 12#12.0.0|GEOS-Chem 12.0.0]], which was released on 10 Aug 2018.
| + | |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | |
| − | |-bgcolor="#CCCCCC"
| + | |
| − | !width="250px"|Module or area
| + | |
| − | !width="750px"|Issue that was resolved
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Aerosols | + | |[[GEOS-Chem 12#12.9.0|12.9.0]] |
| − | |
| + | |17 Jul 2020 |
| − | *[[GEOS-Chem_12#Fix_issues_in_complexSOA_and_complexSOA_SVPOA_restart_files|Fix issues in complexSOA and complexSOA_SVPOA restart files]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/10?closed=1 '''Milestone 12.9.0'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Chemistry | + | |[[GEOS-Chem 12#12.8.2|12.8.2]] |
| − | |
| + | |27 May 2020 |
| − | *[[Stratospheric_chemistry#Disable_STE_calculation_printed_to_log_file|Disable STE calculation printed to log file]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Linoz_stratospheric_ozone_chemistry#Turn_on_Synoz_when_Linoz_is_set_to_false_in_input.geos|Turn on Synoz when Linoz is set to false in input.geos]]
| + | |[https://github.com/geoschem/geos-chem/milestone/13?closed=1 '''Milestone 12.8.2'''] |
| − | *[[GEOS-Chem_12#Remove_duplicate_C3HI_spectrum_in_FJX_spec.dat_and_FJX_j2j.dat|Remove duplicate C3HI spectrum in FJX_spec.dat and FJX_j2j.dat]]
| + | |
| − | *[[GEOS-Chem 12#Add PH2O2 to the default list of prod/loss families in the KPP mechanisms|Add P(H2O2) to the default list of prod/loss families in the KPP mechanisms]]
| + | |
| − | *[[GEOS-Chem_12#Bug_fix_for_liquid_water_content_in_gckpp_HetRates.F90|Bug fix for liquid water content in gckpp_Hetrates.F90]]
| + | |
| − | *[[GEOS-Chem_12#Fixed_typo_in_call_to_GAMMA_HOBr_AER|Fixed typo in call to GAMMA_HOBr_AER (in KPP module gckpp_HetRates.F90)]]
| + | |
| − | *[[Organics_Working_Group#Add_missing_Criegee_intermediate_reaction|Add missing Criegee intermediate reaction]]
| + | |
| − | *[[GEOS-Chem_12#Bug_fix_for_CH4_boundary_conditions|Bug fix for CH4 boundary conditions]]
| + | |
| − | *[[FlexChem#FlexChem bug fix: do not zero ACTA, EOH, HCOOH|Bug fix in FlexChem: do not zero out ACTA, EOH, HCOOH concentrations]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Diagnostics | + | |[[GEOS-Chem 12#12.8.1|12.8.1]] |
| − | |
| + | |21 May 2020 |
| − | *[[GEOS-Chem 12#Fixed typo that prevented PM2.5 from being archived to netCDF output|Fixed typo that prevented PM2.5 from being archived to netCDF output]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Planeflight_diagnostic#Stop_with_error_if_the_plane_type_is_not_specified_in_Planeflight.dat|Planeflight diagnostic fix: Stop with error if the plane type is not specified in Planeflight.dat]]
| + | |[https://github.com/geoschem/geos-chem/milestone/12?closed=1 '''Milestone 12.8.1'''] |
| − | *[[#Bug fix for reference time in netCDF diagnostic files|Bug fix for reference time in netCDF diagnostic files]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Emissions | + | |[[GEOS-Chem 12#12.8.0|12.8.0]] |
| − | |
| + | |04 Mar 2020 |
| − | *[[Lightning_NOx_emissions#Limit_flash_rate_density_in_hcox_lightnox_mod.F90|Limit flash rate density in hcox_lightnox_mod.F90]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-Chem_12#Add_entries_to_HEMCO_Config.rc_for_SOAP_and_pFe_in_CEDS_inventory|Add entries to HEMCO_Config.rc for SOAP and pFe in CEDS inventory]]
| + | |[https://github.com/geoschem/geos-chem/milestone/7?closed=1 '''Milestone 12.8.0'''] |
| − | *[[Trash_burning_emissions#Avoid_double_counting_trash_emissions|Turn off TRASH emissions by default to avoid double counting]]
| + | |
| − | *Update to HEMCO v2.1.007, which includes minor updates:
| + | |
| − | *#[[Implementation of HEMCO in GEOS-Chem#Fixed_error_in_HEMCO_.22exact.22_time_option|Fixed error in HEMCO "exact" cycling option]]
| + | |
| − | *#[[Implementation of HEMCO in GEOS-Chem#Stop with error if multiple containers have the same name|Stop with error if multiple containers have the same name]]
| + | |
| − | *#[[Implementation of HEMCO in GEOS-Chem#Bug fix for distributing emissions in the vertical dimension|Bug fix for distributing emissions in the vertical dimension]]
| + | |
| − | *#[[Implementation of HEMCO in GEOS-Chem#Add extra error checks in HEMCO standalone module|Add extra error checks in HEMCO standalone module]]
| + | |
| − | *#[[Implementation of HEMCO in GEOS-Chem#Remove null string character from netCDF unit string|Remove null string character from netCDF unit string for GEOS-Chem "Classic" simulations]]
| + | |
| − | *#[[Implementation_of_HEMCO_in_GEOS-Chem#Bug fix for HEMCO soil NOx error with ifort 17|Bug fix for HEMCO soil NOx error with ifort 17]]
| + | |
| − | *Correct issues when specifying [[DICE-Africa anthropogenic emissions inventory|DICE-Africa emissions]]:
| + | |
| − | *#[[DICE-Africa_anthropogenic_emissions_inventory#Avoid_double-counting_between_DICE-Africa_and_other_inventories|Avoid double-counting between DICE-Africa and other inventories]]
| + | |
| − | *#[[DICE-Africa_anthropogenic_emissions_inventory#Use_unique_names_for_DICE-Africa_entries_in_HEMCO_Config.rc|Use unique names for DICE-Africa entries in the <tt>HEMCO_Config.rc</tt> file]]
| + | |
| − | *Updates for [[QFED biomass burning emissions]]:
| + | |
| − | *#[[QFED biomass burning emissions#Update to QFED v2.5r1|Update to QFED v2.5r1]]
| + | |
| − | *#[[QFED_biomass_burning_emissions#Fix_QFED_files_for_2016.2F10.2F13|Fix QFED v2.4r6 files for 2016/10/13]]
| + | |
| − | *[[GEOS-Chem 12#Avoid double counting CEDS and GEIA NH3 biofuel emissions|Avoid double counting CEDS and GEIA NH3 biofuel emissions]]
| + | |
| − | *[[Ship_emissions#Fix_bug_in_ARCTAS_SHIP_SO2_scale_factors|Bug fix for ARCTAS_SHIP in <tt>HEMCO_Config.rc</tt> files]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Specialty simulations | + | |[[GEOS-Chem 12#12.7.2|12.7.2]] |
| − | | | + | |09 Mar 2020 |
| − | *[[Coupling_GEOS-Chem_with_RRTMG#Bug_fixes_for_RRTMG_in_v11-02|Bug fixes for v11-02 simulations using the RRTMG radiative transfer model]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/11?closed=1 '''Milestone 12.7.2'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Structural updates | + | |[[GEOS-Chem 12#12.7.1|12.7.1]] |
| − | |
| + | |19 Feb 2020 |
| − | *Initial structural updates to interface GEOS-Chem into WRF
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *Now always declare the netCDF time variable with an unlimited dimension
| + | |[https://github.com/geoschem/geos-chem/milestone/9?closed=1 '''Milestone 12.7.1'''] |
| − | | + | |
| − | |}
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v11-02 ==
| + | |
| − | | + | |
| − | ----
| + | |
| − | ----
| + | |
| − | <big><strong>GEOS-Chem v11-02-final</strong> '''will also carry the designation''' <strong>GEOS-Chem 12.0.0</strong>'''.''' We are migrating to a purely numeric versioning system in order to adhere more closely to software development best practices. For a complete description of the new versioning system, please see [[GEOS-Chem version numbering system|our ''GEOS-Chem version numbering system'' wiki page]].</big>
| + | |
| − | ----
| + | |
| − | ----
| + | |
| − | | + | |
| − | | + | |
| − | The bugs and technical issues listed below were resolved in [[GEOS-Chem v11-02]] (aka 12.0.0). Also be sure to visit [[Known issues caused by compiler bugs|our ''Known issues caused by compiler bugs'' wiki page]] for a list of compiler-related issues and workarounds.
| + | |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | |
| − | |-bgcolor="#CCCCCC"
| + | |
| − | !width="250px"|Module or area
| + | |
| − | !width="750px"|Issue that was resolved
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Chemistry | + | |[[GEOS-Chem 12#12.7.0|12.7.0]] |
| − | |
| + | |03 Feb 2020 |
| − | *[[FlexChem#Add_simplified_P.2FL_families_to_KPP|(v11-02a) Add simplified prod/loss families to KPP to gain computational speedup]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|(v11-02a) Fixes to correct ALK4 lumping issue]]
| + | |[https://github.com/geoschem/geos-chem/milestone/4?closed=1 '''Milestone 12.7.0'''] |
| − | *[[Sulfate_aerosols#Fix_bug_in_CHEM_NIT_routine|(v11-02a) Fix bug in CHEM_NIT routine]]
| + | |
| − | *[[Sulfate_aerosols#Fix_error_in_production_of_SO4s.2C_NITs_in_SEASALT_CHEM_routine|(v11-02a) Fix error in production of SO4s and NITs in SEASALT_CHEM routine]]
| + | |
| − | *[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|(v11-02a) Fix for sulfate production in HET_DROP_CHEM]]
| + | |
| − | *[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|(v11-02a) Fix bugs in sulfate chemistry routines]]
| + | |
| − | *[[Chemistry_Issues#Fixes_for_carbon_creating_reactions|(v11-02c) Add fixes to chemical mechanism to preserve total carbon]]
| + | |
| − | *[[PAN#Bug_fixes_for_EOH_and_MGLY|(v11-02c) Fix bugs for EOH and MGLY following implementation of PAN updates in v11-02a]]
| + | |
| − | *[[UCX_chemistry_mechanism#Fix_bug_impacting_dust_radius_obtained_in_RDUST_ONLINE|(v11-02d) Fix bug impacting dust radii obtained in RDUST_ONLINE]]
| + | |
| − | *[[GEOS-Chem_v11-02#Add_fix_for_IPMN_reactions_contributing_to_high_P.28Ox.29_and_L.28NOx.29|(v11-02d) Fixed IMPN reactions that contributed to high P(Ox) and L(Ox)]]
| + | |
| − | *[[GEOS-Chem_v11-02#Add_bug_fixes_for_GLYX.2C_MGLY.2C_IEPOX.2C_and_IMAE_heterogeneous_chemistry_added_in_v11-02c|(v11-02d) Fixed bugs in GLYX, MGLY, IEPOX, and IMAE heterogeneous chemistry]]
| + | |
| − | *[[ISORROPIA_II#Bug_fixes_for_ISORROPIA_II_stable_mode|(v11-02e) Bug fixes for ISORROPIA II stable mode]]
| + | |
| − | *[[GEOS-Chem_v11-02#Remove_MONX_from_chemical_mechanisms|(v11-02e) Remove MONX from chemical mechanisms]]
| + | |
| − | *[[Secondary_organic_aerosols#Add_MTPO_as_an_advected_and_chemical_species_to_all_full-chemistry_simulations|(v11-02e) Add MTPO to all full-chemistry simulations]]
| + | |
| − | *[[Secondary_organic_aerosols#SOA_formation_from_aqueous_isoprene_uptake|(v11-02e) Always use SOA formation from aqueous isoprene uptake (remove input switch)]]
| + | |
| − | *[[Halogen_chemistry_mechanism#Fixes_in_gckpp_HetRates.F90_following_implementation_in_v11-02d|(v11-02e) Fixes for KPP heterogenous chemistry module for halogen chemistry mechanism]]
| + | |
| − | *[[Secondary_organic_aerosols#Fixes_for_isoprene_SOA_for_consistency_with_Marais_et_al._.282016.29|(v11-02e) Fixes for isoprene SOA for consistency with Marais et al (2016)]]
| + | |
| − | *[[UCX_chemistry_mechanism#v11-02|(v11-02e) Remove UCX 2-D initial boundary conditions option]]
| + | |
| − | *[[UCX_chemistry_mechanism#Fix_for_UCX_mesospheric_NOy_routine|(v11-02f) Fix for UCX mesospheric NOy routine]]
| + | |
| − | *[[Halogen_chemistry_mechanism#Fix_for_N2O5_uptake|(v11-02f) Fix for N2O5 update]]
| + | |
| − | *[[GEOS-Chem_v11-02#Fix_for_organic_nitrate_chemistry|(v11-02f) Fix for organic nitrate chemistry]]
| + | |
| − | *[[GEOS-Chem_v11-02#KPP_errors_with_halogen_chemistry_and_tropchem-based_mechanisms|(v11-02f) Change tolerance value as a temporary fix for convergence errors in 2x2.5 tropchem simulation]]
| + | |
| − | | + | |
| − | *[[Secondary_organic_aerosols#Only add ISOAAQ species to OCPISOA when using the complex SOA option|(v11-02-rc) Only add ISOAAQ species to OCPISOA when using the complex SOA option]]
| + | |
| − | *[[Secondary_organic_aerosols#Only_add_ISOAAQ_species_to_PM2.5_diagnostics_for_simulations_using_the_complex_SOA_option|(v11-02-rc) Only add ISOAAQ species to the PM2.5 diagnostics when using the Complex SOA option]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |[[Cloud convection]] | + | |[[GEOS-Chem 12#12.6.3|12.6.3]] |
| − | | | + | |25 Nov 2019 |
| − | *[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|(v11-02a) Remove computational bottleneck in the convection module]]
| + | |[https://github.com/geoschem/gchp geoschem/gchp] |
| | + | |[https://github.com/geoschem/gchp/milestone/2?closed=1 '''Milestone 12.6.3'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |[[CO2 simulation]] | + | |[[GEOS-Chem 12#12.6.2|12.6.2]] |
| − | | | + | |15 Nov 2019 |
| − | *[[CO2 simulation#CO2_emissions_unit_conversion_not_consistent_with_new_advection_pressure|(v11-02b) CO2 emissions unit conversion was not consistent with the new advection pressure]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/6?closed=1 '''Milestone 12.6.2'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Diagnostics | + | |[[GEOS-Chem 12#12.6.1|12.6.1]] |
| − | |
| + | |28 Oct 2019 |
| − | *[[Particulate_matter_in_GEOS-Chem#Save_out_PM2.5_diagnostic_at_STP_conditions|(v11-02a) Save out PM2.5 diagnostic at STP conditions]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-Chem_v11-01#Bugs_in_convective_flux_diagnostics_.28ND14.29|(v11-02a) Bug fixes in convective flux diagnostics (ND14)]]
| + | |[https://github.com/geoschem/geos-chem/milestone/5?closed=1 '''Milestone 12.6.1'''] |
| − | *[[GEOS-Chem_v11-01#P.28OH.29_not_saved_out_in_ND22_diagnostic|(v11-02a) Restore P(OH) in ND22 diagnostic]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Make_anthropogenic_emissions_diagnostics_3D|(v11-02a) Make anthropogenic emissions diagnostics 3D]]
| + | |
| − | *[[Tagged_CO_simulation#Fix_ND65_bugs_in_tagged_CO_simulation|(v11-02a) Fix ND65 bugs in tagged CO simulation]]
| + | |
| − | *[[Mineral_dust_aerosols#Bug_in_ND21_diagnostic_indexing_for_size-resolved_dust_species|(v11-02a) Fix bug in ND21 diagnostic indexing for dust species]]
| + | |
| − | *[[GEOS-Chem_v11-02#ND40_planeflight_diagnostic_not_always_written_out_when_turned_on|(v11-02b) Always write out ND40 planeflight diagnostic when enabled]]
| + | |
| − | *[[GEOS-Chem v11-02#Bug fixes for the ND50 timeseries diagnostic|(v11-02c) Bug fixes for the ND50 timeseries diagnostic]]
| + | |
| − | *[[Stratospheric_chemistry#STE_fluxes|(v11-02c) Fix the STE diagnostics and use them in the standard benchmarking procedure]]
| + | |
| − | *[[Secondary_organic_aerosols#Fix_diagnostics_bugs_in_the_SOA-SVPOA_simulation|(v11-02c) Fix diagnostic bugs in the SOA-SVPOA simulation]]
| + | |
| − | *[[GEOS-Chem_v11-02#Fixes_for_two_new_ND21_binary_diagnostics_introduced_in_v11-02|(v11-02e) Fixes for two new ND21 binary diagnostics introduced in v11-02]]
| + | |
| − | *[[Secondary_organic_aerosols#Calculation_of_PM2.5.2C_AOD.2C_and_aerosol_mass|(v11-02e} Always use simple SOA in computation of PM2.5 and AOD]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Date and time (and related quantities) | + | |width="80px"|[[GEOS-Chem 12#12.6.0|12.6.0]] |
| − | |
| + | |width="100px"|18 Oct 2019 |
| − | *[[GEOS-Chem_v11-01#Bug_in_cos.28SZA.29_for_start_of_timestep|(v11-02a) Fixed bug in computation of cosine of solar zenith angle]]
| + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | | + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/2?closed=1 '''Milestone 12.6.0'''] |
| − | |-valign="top"
| + | |
| − | |[[Dry deposition|Dry]] and [[Wet deposition|wet deposition]] | + | |
| − | |
| + | |
| − | *[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|(v11-02a) Fix bug in computation of dry deposition aerodynamic resistance Ra]]
| + | |
| − | *[[Aerosol_emissions#Bug_fix_for_MOPO_and_MOPI_definitions_in_species_database|(v11-02c) Fix bug in species definitions for marine POA simulation]]
| + | |
| − | *[[GEOS-Chem_v11-02#Fix_dust_rainout_settings_to_match_BCPO|(v11-02e) Fix dust rainout settings to match that of hydrophobic BC (aka BCPO)]]
| + | |
| − | *[[Physical_properties_of_GEOS-Chem_species#Fix_Henry.27s_law_parameters_for_HCl|(v11-02f) Fix Henry's law parameters for HCl]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[HEMCO|Emissions (via HEMCO)]]
| + | |
| − | |
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02a|(v11-02a) Update to HEMCO v2.0.004]]
| + | |
| − | *[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|(v11-02a) Default US emissions to NEI2011 after 2013]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_computation_of_local_time_in_HCO_GetSuncos|(v11-02a) Fixed bug in computation of local time in the HEMCO routine <tt>HCO_GetSuncos</tt>]]
| + | |
| − | *[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|(v11-02a) Fix acetone parameterization in hcox_seaflux_mod.F90]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Read_default_DEP_RESERVOIR_fields_from_file_when_not_found_in_HEMCO_restart_file|(v11-02a) Change DEP_RESERVOIR time cycling option to C]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Now_use_YYYYMMDDhhmm_format_for_time_stamp_values|(v11-02c) Now use <tt>YYYYMMDDhhmm</tt> for time stamp values]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Avoid_segmentation_fault_in_DustGinoux_extension|(v11-02c) Add error trap in to avoid a segmentation fault when the DustGinoux extension is turned off]]
| + | |
| − | *[[Mercury#Bug_fixes_for_Hg_emissions|(v11-02c) Bug fixes for Hg emissions]]
| + | |
| − | *[[Secondary_organic_aerosols#Update_simple_SOA_entries_in_HEMCO_to_follow_MTPA.2BLIMO.2BMTPO|(v11-02e) Update simple SOA entries in HEMCO_Config.rc to follow MTPA+LIMO+MTPO]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02e|(v11-02e) Fix bug in HEMCO reference time algorithm]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02f|(v11-02f) Update from HEMCO v2.1.001 to 2.1.005]]
| + | |
| − | *[[Biomass_burning_emissions#Fix_bug_in_biomass_burning_emissions_when_GFED_is_turned_off|(v11-02f) Fix bug in biomass burning when GFED is turned off]]
| + | |
| − | *[[RCP_future_emissions_scenarios#Fix_missing_HCOOH_factors_for_RCP_in_HEMCO_Config.rc|(v11-02f) Fix missing HCOOH factors for RCP scenarios in HEMCO_Config.rc file]]
| + | |
| − | *(v11-02-rc) Turn off XIAO inventory to avoid double-counting anthropogenic propane emissions]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Fixes to facilitate running GEOS-Chem in HPC environments | + | |
| − | | | + | |
| − | *[[UCX_chemistry_mechanism#Bug_fixes_for_running_UCX_in_ESMF_environment|(v11-02a) Bug fixes for using UCX chemistry in the ESMF environment]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Nested Model Working Group|Nested-grid simulations]] | + | |
| − | |
| + | |
| − | *[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|(v11-02a) Fixed typo in nested-grid transport routine <tt>INIT_WINDOW</tt>]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Mercury|Mercury simulation]]
| + | |
| − | |
| + | |
| − | *(v11-02-rc) Minor fixes (including updated parameters) for the [[Mercury]] simulation.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Overview_of_GMAO_met_data_products|Meteorological fields]]
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem v11-02#Add MERRA2 to #if and #elif statements where it had been omitted|(v11-02c) Add MERRA2 to <tt>#if</tt> and <tt>#elif</tt> statements where it had been omitted]]
| + | |
| − | *[[Downloading_GEOS-Chem_source_code_and_data#Inconsistency_in_GEOS-FP_files_at_Harvard_and_Dalhousie_for_July_2013|(v11-02e) Sync GEOS-FP met field files on Harvard FTP with those at Dalhousie]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[The NcdfUtilities package|netCDF]] and file I/O issues
| + | |
| − | |
| + | |
| − | *[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|(v11-02a) Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]]
| + | |
| − | *[[The NcdfUtilities package#Enable_compression_in_netCDF-4_output_files|(v11-02a) Enable data compression in netCDF-4 output files]]
| + | |
| − | *[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|(v11-02a) HEMCO diagnostic and restart files now have an unlimited time dimension]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Rn-Pb-Be simulation|Rn-Pb-Be simulation]] | + | |
| − | |
| + | |
| − | *[[Rn-Pb-Be_simulation#Vertical_Grid|(v11-02e) The Rn-Pb-Be simulation now uses 72 vertical levels by default]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Structural issues
| + | |
| − | |
| + | |
| − | *[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|(v11-02a) Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]]
| + | |
| − | *[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|(v11-02a) Bug fix: Specifing <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]]
| + | |
| − | *[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|(v11-02a) Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> for a cleaner build sequence]]
| + | |
| − | *[[GEOS-Chem v11-02#Print the version number to the log file|(v11-02a) Print the version number to the log file]]
| + | |
| − | *[[#Removed_the_NNPAR_parameter_from_CMN_SIZE_mod.F|(v11-02a) Removed the <tt>NNPAR</tt> parameter from <tt>CMN_SIZE_mod.F</tt>]]
| + | |
| − | *[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|(v11-02a) Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt> in the wetdep module]]
| + | |
| − | *[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|(v11-02a) Removed obsolete fields of the <tt>Input_Opt</tt> object]]
| + | |
| − | *[[GEOS-Chem_v11-02#Fixed_an_incorrect_format_statement_in_input_mod.F|(v11-02c) Fixed an incorrect format statement in <tt>input_mod.F</tt>]]
| + | |
| − | *[[Sulfate_aerosols#Add_bug_fix_in_sulfate_mod.F_involving_reorder_IF_statements_for_Fahey_and_Seinfeld_decision_algorithm|(v11-02e) Reordered IF statement in <tt>sulfate_mod.F</tt> for Fahey & Seinfeld decision algorithm]]
| + | |
| − | *[[GEOS-Chem_v11-02#Change_timestep_units_from_minutes_to_seconds|(v11-02e) Change timestep units from minutes to seconds]]
| + | |
| − | *[[UCX_chemistry_mechanism#Remove_UCX_.23ifdefs_and_replace_with_Input_Opt.25LUCX|(v11-02e) Remove #ifdefs for UCX and replace with <tt>Input_Opt%LUCX</tt> logical switch]]
| + | |
| − | *[[GEOS-Chem_v11-02#Fix_bug_in_units_of_UCX_P.2FL_rates|(v11-02f) Fix bug in units of UCX prod/loss rates]]
| + | |
| − | *[[MERRA-2_implementation_details#Default_timestep_for_MERRA-2_nested_grid_simulations|(v11-02f) Change default timesteps for MERRA-2 nested-grid simulations]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Tagged O3 simulation]]
| + | |
| − | |
| + | |
| − | *[[Tagged_O3_simulation#Write_initial_and_final_Ox_mass_to_file|(v11-02b) Write initial and final O3 mass to file, to facilitate budget computations]]
| + | |
| − | *[[Tagged_O3_simulation#Fix_bug_in_calculation_of_L.28Ox.29|(v11-02f) Fix bug in calculation of L(Ox) for tagged O3 simulations]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[TOMAS aerosol microphysics]]
| + | |
| − | |
| + | |
| − | *[[TOMAS_aerosol_microphysics#Typo_in_wetscav_mod.F_for_TOMAS30_simulation|(v11-02c) Fixed typo in <tt>wetscav_mod.F</tt> for the TOMAS30 simulation]]
| + | |
| | | | |
| | |} | | |} |
| | | | |
| − | == Issues resolved in GEOS-Chem v11-01 == | + | == Bugs and fixes in older GEOS-Chem versions == |
| | | | |
| − | The bugs and technical issues listed below were resolved in [[GEOS-Chem v11-01]]. Also be sure to visit [[Known issues caused by compiler bugs|our ''Known issues caused by compiler bugs'' wiki page]] for a list of compiler-related issues and workarounds.
| + | For a complete list of bugs and fixes in older GEOS-Chem versions, please see: |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | |
| − | |-bgcolor="#CCCCCC"
| + | |
| − | !width="250px"|Module or area
| + | |
| − | !width="750px"|Issue that was resolved
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Aerosol-only simulation]]
| + | |
| − | |
| + | |
| − | *[[Aerosol-only_simulation#Fixed_undefined_molecular_weight_of_HNO3_in_routine_SEASALT_CHEM|Fixed undefined molecular weight of HNO3 in routine SEASALT_CHEM]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[CH4 simulation]]
| + | |
| − | |
| + | |
| − | *[[CH4_simulation#Fix_bug_in_CH4_emissions|Fix bug in CH4 emissions unit]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[GEOS-Chem chemistry mechanisms|Chemistry]]
| + | |
| − | |
| + | |
| − | *[[Centralized_chemistry_time_step#Optimal_Configuration|Adopt the optimal timestep recommendations of Philip et al 2015]]
| + | |
| − | *[[GEOS-Chem_v11-01#Update_of_PMN_.2B_O3_reaction_products_in_globchem.dat_file|Update of PMN + O3 reaction products in globchem.dat file]]
| + | |
| − | *[[UCX_chemistry_mechanism#Fix_for_black_carbon_in_ucx_mod.F|Fix for black carbon in <tt>ucx_mod.F</tt>]]
| + | |
| − | *[[GEOS-Chem_v11-01#Modifications_to_ND20_to_archive_afternoon_P.28O3.29_and_L.28O3.29|Modifications to ND20 to archive afternoon P(O3) and L(O3)]]
| + | |
| − | *[[Sulfate_aerosols#Bug_fix_for_sea_salt_alkalinity_in_sulfate_mod.F|Bug fix for sea salt alkalinity in <tt>sulfate_mod.F</tt>]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fix_for_offline_dust_aerosols_when_UCX_is_on|Bug fix for offline dust aerosols when UCX is on]]
| + | |
| − | *[[Mineral_dust_aerosols#Bug_fixes_for_hydrophobic_aerosol_properties|Bug fixes for hydrophobic aerosol properties]]
| + | |
| − | *[[New_isoprene_scheme#Syntax_error_in_globchem.dat_file_for_MOBA_reaction_rate|Fix syntax error in <tt>globchem.dat</tt> for the MOBA + OH —> MOBAOO reaction rate]]
| + | |
| − | *[[New_isoprene_scheme#Bug_in_reaction_ISNOOA_.2B_NO2_in_globchem.dat|Fixed typo in the ISNOOA + NO2 -> PMN reaction rate in <tt>globchem.dat</tt>]]
| + | |
| − | *[[Stratospheric_chemistry#Fix_for_monthly_stratospheric_P.2FL_rates_in_HEMCO|Fix for monthly stratospheric P/L rates in HEMCO]]
| + | |
| − | *[[Stratospheric_chemistry#Bug_in_the_GMI_stratospheric_production_rates_for_HCOOH|Fix bug in the GMI stratospheric production rates for HCOOH]]
| + | |
| − | **[[Stratospheric_chemistry#Fixed_incorrect_timestamps_in_the_newest_HCOOH_prod.2Floss_file|Fixed incorrect timestamps in the updated GMI HCOOH strat P/L file]]
| + | |
| − | *[[FlexChem#Incorrect_species_units_used_in_routines_UCX_NOX_and_UCX_H2SO4PHOT|Fix incorrect species units in routines UCX_NOX and UCX_H2SO4PHOT]]
| + | |
| − | *[[GEOS-Chem_v11-01#Fix_molecular_weight_of_N2O5|Fix molecular weight of N2O5]]
| + | |
| − | *[[Aerosol_optical_properties#Fix_for_TITLEAAt_out-of-bounds_error|Fix for out-of-bounds error when using the brown carbon option]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[CO2 simulation]]
| + | |
| − | |
| + | |
| − | *[[CO2_simulation#Additional_Update_and_Bug_Fix|Update CO2 emission files]]
| + | |
| − | *[[CO2_simulation#Bug_fix:_Make_sure_nAdvect_is_initialized_in_EMISSCO2|Bug fix: Make sure <tt>nAdvect</tt> is initialized in EMISSCO2]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Cloud convection]]
| + | |
| − | |
| + | |
| − | *[[Cloud_convection#Fixed bug in DO_MERRA_CONVECTION affecting mass conservation|Correct bug in below cloud average mixing ratio calculation in DO_MERRA_CONVECTION to improve mass balance]]
| + | |
| − | *[[Cloud_convection#Resolve_very_high_tracer_concentrations_in_MERRA_and_GEOS-FP_convective_scavenging|Resolve very high tracer concentrations in GEOS-FP and MERRA convective scavenging]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Compiler / Fortran issues
| + | |
| − | |Compiler issues:
| + | |
| − | *[[GNU Fortran compiler|Add support for GNU Fortran compiler]]
| + | |
| − | *[[PGI Fortran compiler#File_Linking_Error|Fix linker error when using the PGI compiler]]
| + | |
| − | *[[PGI Fortran compiler#Updates_for_GEOS-Chem_v11-01|Additional updates compiling GEOS-Chem with the PGI Fortran compiler]]
| + | |
| − | *[[PGI Fortran compiler#Updates_for_GEOS-Chem_v11-01|Add further fixes for compiling GEOS-Chem with PGI Fortran]]
| + | |
| − | *[[GEOS-Chem_Makefile_Structure#TRACEBACK.3Dy_is_now_the_default_setting|<tt>TRACEBACK=y</tt> is now the default setting for all simulations]]
| + | |
| − | *[[Intel_Fortran_Compiler#Cannot_compile_GEOS-Chem_v10-01_with_Intel_Fortran_Compiler_v17|Remove offending code that was preventing GEOS-Chem from compiling with Intel Fortran v17]]
| + | |
| − | | + | |
| − | Fortran language issues:
| + | |
| − | *[[GEOS-Chem_v11-01#Do_not_nullify_local_pointers_in_the_same_line_where_they_are_declared|Do not nullify local pointers in the same line where they are declared]]
| + | |
| − | *[[Flexible_precision_in_GEOS-Chem#Update_KIND_parameters_to_facilitate_interface_with_the_Beijing_Climate_Center_model|Update flexible precision parameters so that GEOS-Chem can interface with the Beijing Climate Center model]]
| + | |
| − | *[[GEOS-Chem v11-01#Prevent errors caused by uninitialized fields of the State_Met object|Prevent errors caused by uninitialized fields of the <tt>State_Met</tt> object]]
| + | |
| − | *[[UCX_chemistry_mechanism#Only_allocate_certain_fields_of_State_Chm_for_UCX-based_simulations|Only allocate certain fields of <tt>State_Chm</tt> for UCX-based simulations]]
| + | |
| − | *[[GEOS-Chem v11-01#Allocate aerosol fields of State_Chm only for full-chemistry or aerosol-only simulations|Allocate aerosol fields of <tt>State_Chm</tt> only for full-chemistry or aerosol-only simulations]]
| + | |
| − | *[[Aerosol_emissions#Online_emission_of_marine_primary_organic_aerosol_.28POA.29|Parallelization bug fix for marine POA]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[List of diagnostics for v11-01|Diagnostics]]
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v11-01#Bug_fixes_for_the_ND21_diagnostic|Bug fix for the ND21 diagnostic]]
| + | |
| − | *[[MEGAN_v2.1_plus_Guenther_2012_biogenic_emissions#Bug_fix_for_monoterpenes_in_ND46_diagnostic|Bug fix for monoterpenes in ND46 diagnostic]]
| + | |
| − | *[[GEOS-Chem_v11-01#Fix_units_of_O1D_and_O3P_in_ND43_diagnostic|Fix units of O1D and O3P in ND43 diagnostic]]
| + | |
| − | *[[GEOS-Chem_v11-01#Fix_incorrect_unit_strings_for_ND65_diagnostic_in_diag3.F|Fix incorrect unit strings for ND65 diagnostic in <tt>diag3.F</tt>]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[HEMCO data directories|Emissions (via HEMCO)]]
| + | |
| − | |
| + | |
| − | *[[Lightning_NOx_emissions#Correct_problem_in_OTD-LIS_local_redistribution_files|Fix problem in OTD/LIS lighning redistribution files]]
| + | |
| − | *[[GEOS-Chem_v10-01#Fix_for_reading_hourly_NEI2011_emissions|Fix for reading hourly NEI2011 emissions]]
| + | |
| − | *[[EMEP_European_anthropogenic_emissions#Zero_EMEP_emissions_at_30N_for_2x25_and_higher_resolutions|Use an updated EMEP mask file to prevent zero emissions at 30 N for 2° x 2.5° or higher resolutions]]
| + | |
| − | *[[Secondary_organic_aerosols#Incorrect_concentrations_in_SOA-SVPOA_simulation|Fix an emissions error in the SOA-SVPOA simulation]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_missing_pointer_in_call_to_HCO_CalcVertGrid|Fixed missing pointer in call to HEMCO routine Hco_CalcVertGrid]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Enable_emissions_in_the_stratosphere_for_specialty_simulations|Correct bug introduced in v11-01e where emissions were disabled in the stratosphere for specialty simulations]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_bug_preventing_HEMCO_from_writing_restart_files_more_than_once_per_run|Fixed bug preventing HEMCO from writing restart files more than once per run]]
| + | |
| − | *[[EDGAR_v4.2_anthropogenic_emissions#Correct_bug_in_units_of_EDGAR_v4.2_SO2_emissions|Correct bug in units of EDGAR v4.2 SO2 emissions]]
| + | |
| − | *[[EDGAR_v4.2_anthropogenic_emissions#Prevent_biofuel_emissions_from_being_double_counted|Prevent biofuel emissions from being double counted in EDGAR v4.2]]
| + | |
| − | *[[Scale_factors_for_anthropogenic_emissions#Bug_fix_for_NOx_diurnal_scale_factors|Fix bug in NOx diurnal scale factors]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem|Update HEMCO from version 1.1.016 to latest version available]]
| + | |
| − | *[[Implementation_of_RETRO_Anthropogenic_Emissions#RETRO_anthropogenic_propane_emissions_are_too_low|Replace RETRO C3H8 emissions with emissions from Xiao et al.]]
| + | |
| − | *[[QFED_biomass_burning_emissions#Biomass_burning_emissions_diagnostic_is_zero_when_QFED_is_used|Fix for biomass burning diagnostic when QFED emissions are used]]
| + | |
| − | *[[HEMCO#Update:_Preventing_seg_fault_in_HEMCO_v2.0_caused_by_compiler_bug|Prevent seg fault in HEMCO v2.0 caused by Intel Fortran compiler bug]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Mercury]] and [[POPs simulation|POPs]] simulations
| + | |
| − | |
| + | |
| − | *[[Mercury#Hg_ocean_MLD_bug_fixes|Bug fixes for computing MLD in <tt>ocean_mercury_mod.F</tt>]]
| + | |
| − | *[[Mercury#Parallelization_bug_fixes_for_GEOS-5_Hg_simulations|Fix parallelization errors that prevented Hg simulations from passing unit tests]]
| + | |
| − | *[[Mercury#Avoid_floating-point_exception_in_OCEAN_MERCURY_READ|Avoid floating-point exception in OCEAN_MERCURY_READ]]
| + | |
| − | *[[Mercury#Bug_Fixes_to_v11-01c_Hg_Updates|Bug fixes for Arctic Hg updates in v11-01c]]
| + | |
| − | *[[Mercury#Correct_too-high_emissions_of_Hg2_over_China_and_EU|Correct too-high emissions of Hg2 over China and EU]]
| + | |
| − | *[[Mercury#Now_call_DO_RED_INPLUME_after_the_HEMCO_configuration_file_is_read|Now call subrouine DO_RED_INPLUME after the HEMCO configuration file is read]]
| + | |
| − | *[[POPs_simulation#Avoid_floating-point_exception_in_routine_CHEM_POPGP|Avoid floating-point error in routine CHEM_POPGP]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Met fields and derived quantities
| + | |
| − | |
| + | |
| − | *[[Air_Quantity_Updates_for_v11-01|Incorporate moisture into air quantities, tracer units, and tracer unit conversions]]
| + | |
| − | *[[GEOS-Chem_species_units#Updating_Air_Quantities|Bug fix to update air quantities after specific humidity is updated in non-local PBL mixing]]
| + | |
| − | *[[GEOS-Chem_v11-01#Incorrect_incorporation_of_moisture_in_GEOS-Chem_air_quantities|Fix to remove moisture signature in dry mixing ratio]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Preparing data files for use with HEMCO#The COARDS netCDF standard|netCDF I/O]]
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_Output_Files#NetCDF_File_Format|Migration from bpch to netCDF output file format]]
| + | |
| − | *[[GEOS-Chem_Output_Files#Improve_write_speed_of_netCDF_output_files|Improve write speed of netCDF output files]]
| + | |
| − | *[[GEOS-Chem_Output_Files#GAMAP_can_now_read_GEOS-Chem_restart_files_in_netCDF_format|GAMAP can now read GEOS-Chem restart files in netCDF format]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[FAST-JX_v7.0_photolysis_mechanism|Photolysis]]
| + | |
| − | |
| + | |
| − | *[[FAST-JX_v7.0_photolysis_mechanism#Fix_for_TOMS_to_address_strange_cycle_in_OH_output|Fix for TOMS/HEMCO to address strange cycle in OH output]]
| + | |
| − | *[[FAST-JX_v7.0_photolysis_mechanism#Use_TOMS_ozone_for_all_years_when_running_simulations_with_GEOS-5|Use TOMS ozone for all years when running simulations with GEOS-5 meteorology]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Regridding in GEOS-Chem|Regridding]]
| + | |
| − | |
| + | |
| − | *[[Regridding_in_GEOS-Chem#Bug_fix:_MAP_A2A_now_only_uses_periodic_BCs_for_global_data|Bug fix: MAP_A2A now applies periodic boundary conditions only to global data sets during regridding]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_time_interpolation_in_ncdf_mod.F90|Bug fix for time interpolation in netCDF utility module <tt>ncdf_mod.F90</tt>]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Coupling_GEOS-Chem_with_RRTMG|RRTMG radiative transfer model]]
| + | |
| − | |
| + | |
| − | *[[Coupling_GEOS-Chem_with_RRTMG#Fix_bug_that_prevents_storage_of_O3_and_CH4_RFs|Fix bug that prevents storage of O3 and CH4 RF's]]
| + | |
| − | *[[Coupling_GEOS-Chem_with_RRTMG#Bug_in_RRTMG_array_sizes|Bug fix in RRTMG array sizes]]
| + | |
| − | *[[Coupling_GEOS-Chem_with_RRTMG#Bug_fixes_in_rrtmg_rad_transfer_mod.F|Further bug fixes in <tt>rrtmg_transfer_mod.F</tt>]]
| + | |
| − | *[[Coupling_GEOS-Chem_with_RRTMG#Replace_nonstandard_DLOG_function_with_LOG|Replace nonstandard DLOG function with LOG]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Marine POA simulations
| + | |
| − | |
| + | |
| − | *[[Aerosol_emissions#Bug_fix:_Allocate_the_OCCONV_array_for_marine_POA_simulations|Allocate the OCCONV array for marine POA simulations]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Rn-Pb-Be simulation|Radon-Lead-Beryllium simulation]]
| + | |
| − | |
| + | |
| − | *[[Rn-Pb-Be_simulation#Typo_in_HEMCO_extension_module_hcox_gc_RnPbBe_mod.F90|Fix typo in HEMCO extension module <tt>hcox_gc_RnPbBe_mod.F90</tt>]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[GEOS-Chem species database|Species database]] and [[Physical_constants|definitions of physical constants]]
| + | |
| − | |
| + | |
| − | *[[Physical_properties_of_GEOS-Chem_species#Discrepancies_found_in_the_dry_deposition_module|Remove inconsistencies in the definitions of physical properties of GEOS-Chem species]]
| + | |
| − | *[[Sea_salt_aerosols#Molecular_weight_discrepancy_in_drydep_mod.F|Use proper molecular weights for sea salt aerosols in the dry deposition module]]
| + | |
| − | *[[Sulfate_aerosols#Give_SO4s_and_NITs_the_same_molecular_weight_as_SALC|Give SO4s and NITs the same molecular weight as SALC]]
| + | |
| − | *[[Mineral_dust_aerosols#Now_treat_DST2-DST4_as_coarse_mode_in_wet_scavenging|Now treat DST2-DST4 as coarse mode in wet scavenging]]
| + | |
| − | **NOTE: This also will apply to dust uptake tracers DSTAL2-4, NITD2-4, SO4D2-4
| + | |
| − | *[[GEOS-Chem_species_database#Defining_molecular_weight_fields_of_the_Input_Opt_object_from_the_species_database|Define molecular weight fields of the <tt>Input_Opt</tt> object from the species database]]
| + | |
| − | *[[Physical_constants|Now use consistent physical parameter values throughout GEOS-Chem]]
| + | |
| − | *[[Physical_constants|Now use consistent physical constant declarations]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Tagged CO simulation]]
| + | |
| − | |
| + | |
| − | *[[Tagged_CO_simulation#OH_is_now_converted_to_the_proper_units_after_being_read_from_HEMCO|Now convert OH to the proper units in the tagged CO simulation]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Tagged O3 simulation]]
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_in_European_grid_range_for_tagged_Ox_simulation|Bug fix in European grid range for tagged O3 simulation]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fix_for_PBLTOP_and_MTTOP_values_in_tagged_ozone_simulation|Bug fix for PBLTOP and MTTOP values in tagged O3 simulation]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[TOMAS aerosol microphysics]]
| + | |
| − | |
| + | |
| − | *[[TOMAS_aerosol_microphysics#Updates_to_TOMAS_Jeagle_sea_salt_extension|Updates to TOMAS Jeagle sea salt extension]]
| + | |
| − | *[[TOMAS_aerosol_microphysics#Add_temporary_fix_to_get_TOMAS_dry_deposition_to_pass_unit_tests|Add temporary fix to get TOMAS dry deposition to pass unit tests]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Various structural updates
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v11-01#Bug_fix_for_custom_grid_in_tpcore_bc_mod.F|Bug fix for custom nested grid in <tt>tpcore_bc_mod.F</tt>]]
| + | |
| − | *[[GEOS-Chem v11-01#Rename_grid_mod.F90_to_gc_grid_mod.F90|Rename <tt>grid_mod.F90</tt> to <tt>gc_grid_mod.F90</tt>]]
| + | |
| − | *[[GEOS-Chem v11-01#Error message output now advises users to check the HEMCO log file|GEOS-Chem error messages now advise the user to check the HEMCO log file]]
| + | |
| − | *[[GEOS-Chem_v11-01#Print_message_to_log_file_if_OpenMP_parallelization_is_turned_off|Print message to log file if OpenMP parallelization is turned off]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |[[Wet deposition]]
| + | |
| − | |
| + | |
| − | *[[Wet_deposition#Low_tropospheric_210Pb_lifetime_against_deposition_in_v11-01b|Quick fix for low tropospheric 210Pb lifetime against wet deposition]]
| + | |
| − | *[[Wet_deposition#Fix_bug_in_GEOS-FP_re-evaporation_calculation|Fix bug in GEOS-FP re-evaporation calculation]]
| + | |
| − | | + | |
| − | |}
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 19:57, 23 January 2017 (UTC)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v10-01 ==
| + | |
| − | | + | |
| − | The following bugs and/or technical issues were resolved in [[GEOS-Chem v10-01]]. Also be sure to visit [[Known issues caused by compiler bugs|our ''Known issues caused by compiler bugs'' wiki page]] for a list of compiler-related issues and workarounds.
| + | |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | |
| − | |-bgcolor="#CCCCCC"
| + | |
| − | !width="250px"|Module or area
| + | |
| − | !width="750px"|Issue that was resolved
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Stratospheric chemistry module
| + | |
| − | |
| + | |
| − | *[[Stratospheric_chemistry#Reduce_memory_footprint_of_the_stratospheric_chemistry_module|Reduce memory footprint of the stratospheric chemistry module]]
| + | |
| − | *[[Stratospheric_chemistry#Bug_fix_in_routine_GET_RATES_INTERP|Bug fix in GET_RATES_INTERP]]
| + | |
| − | *[[Bromine_chemistry_mechanism#Bugs_in_data_files_used_to_prescribe_stratospheric_Bry|Now read corrected stratospheric Bry data via HEMCO]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Photolysis
| + | |
| − | |
| + | |
| − | *[[FAST-J photolysis mechanism#Now_use_MAP_A2A_to_regrid_1x1_TOMS_O3_to_model_resolution|Now use MAP_A2A to regrid 1x1 TOMS O3 to model resolution]]
| + | |
| − | *[[FAST-J photolysis_mechanism#Bug_fix_for_determining_when_to_use_TOMS_O3_columns|Bug fix for determining when to use TOMS O3 columns]]
| + | |
| − | *[[Development_of_Fast-JX_in_GEOS-Chem#Reactivation_of_bromine_species_photolysis_for_tropospheric_simulation|Reactivation of Br species photolysis in Fast-JX for tropospheric chemistry simulation]]
| + | |
| − | *[[Development_of_Fast-JX_in_GEOS-Chem#Error_in_reducing_wavelength_bins_for_tropospheric_simulation|Fixed wavelength bin interpolation error in Fast-JX for tropospheric-only simulation]]
| + | |
| − | *[[FAST-JX_v7.0_photolysis_mechanism#Now_use_proper_org.dat_file_with_data_for_multiple_wavelengths|Now use proper photolysis input file <tt>org.dat</tt>]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |NOx-Ox chemistry and nested grid simulations
| + | |
| − | |
| + | |
| − | *[[UCX_chemistry_mechanism#Modify_treatment_of_N2O5_.2B_H2O_reaction_in_calcrate.F|Modify treatment of N2O5+H2O reaction in calcrate.F]]
| + | |
| − | *[[Setting_up_GEOS-Chem_nested_grid_simulations#Parallelization_error_in_nested_grid_simulations|Fixed parallelization error in nested grid simulations]]
| + | |
| − | *[[Ship_emissions#Fix_for_high_values_of_O3_dry_deposition|Fix for high values of O3 dry deposition]]
| + | |
| − | *[[New_isoprene_scheme#Remove_duplicate_GLYX_product_from_RIO2_reaction|Remove duplicate GLYX product from RIO2 reaction]]
| + | |
| − | *[[Sea_salt_aerosols#Bug_in_ND44_drydep_diagnostic_for_sea_salt_aerosols|Bug fix in ND44 drydep diagnostic for sea salt aerosols]]
| + | |
| − | *[[FAST-JX_v7.0_photolysis_mechanism#Final_recommendation_for_J.28HAC.29_and_J.28PAN.29|Implement final recommendation for J(HAC) and J(PAN)]]
| + | |
| − | *[[FAST-JX_v7.0_photolysis_mechanism#Acetaldehyde_photolysis|Now use updated cross-sections for computing J(ALD2)]]
| + | |
| − | *[[Nested_Model_Working_Group#Bug_fixes_for_the_0.25x0.3125_nested_CH_simulation|Resolved technical issues for 0.25° x 0.3125° CH nested simulation]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fixes_and_and_updates_for_v10-01g|Bug fix for planeflight diagnostic when using chemistry timesteps < 15 min]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fixes_and_updates_for_v10-01i|Now call the planeflight diagnostic after chemistry, not after emissions]]
| + | |
| − | *[[Wet_deposition#Bug_fixes_for_scavenging_by_co-condensation|Bug fixes for wet scavenging by co-condensation]]
| + | |
| − | *[[Wet_deposition#Bugs_in_MERRA_wet_deposition|Fixes for bugs in wet deposition when using MERRA meteorology]]
| + | |
| − | *[[Dry_deposition#Remove_obsolete_ISN2_drydep_species|Remove obsolete ISN2 drydep species]]
| + | |
| − | *[[GEOS-Chem_v10-01#Fixed_typo_for_BROMOCARB_SEASON_in_HEMCO_configuration_files|Fixed typo for BROMOCARB_SEASON in HEMCO configuration files]]
| + | |
| − | *[[GEOS-Chem_v10-01#Fixes_for_the_0.25_x_0.3125_nested_EU_simulation_using_GEOS-FP_meteorology|Bug fixes for GEOS-FP nested EU simulation]]
| + | |
| − | *[[GEOS-Chem_v10-01#Additional_fixes_for_MERRA_wet_deposition|Fixes for wet deposition when using MERRA met fields]]
| + | |
| − | *[[GEOS-Chem_v10-01#Fix_AEFs_for_sesquiterpenes_in_the_SOA_simulation|Fix MEGAN AEF's for sesquiterpenes in the SOA simulation]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Specialty simulations
| + | |
| − | |
| + | |
| − | *[[TOMAS_aerosol_microphysics#Reactivating_dust_tracers_in_TOMAS_simulations|Reactivating dust tracers in TOMAS simulations]]
| + | |
| − | *[[TOMAS_aerosol_microphysics#Prevent_sea_salt_from_being_emitted_over_ice_in_TOMAS|Prevent sea salt from being emitted over ice in TOMAS]]
| + | |
| − | *[[TOMAS_aerosol_microphysics#Fix_for_ND61_diagnostic|Fix for ND61 diagnostic in TOMAS simulations]]
| + | |
| − | *[[Global_Terrestrial_Mercury_Model#Fixed_library_linking_issue_when_building_GTMM_into_GEOS-Chem|Fixed library linking issue when building GTMM into GEOS-Chem]]
| + | |
| − | *[[CH4_simulation#Minor_fixes_to_CH4_simulation_for_MERRA_meteorology|Minor fixes to CH4 simulation for MERRA meteorology]]
| + | |
| − | *[[POPs_simulation#Avoid_div-by-zero_errors_in_POPs_simulation|Avoid div-by-zero errors in POPs simulation]]
| + | |
| − | *[[Tagged_CO_simulation#Bug_fixes_and_updates_for_tagged_CO_in_v9-02|Bug fixes and updates for tagged CO simulation in v9-02]]
| + | |
| − | *[[Mercury#Bug_in_tagged_Hg_emissions_in_v9-02|Fixed bug in tagged Hg emissions]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |HEMCO emissions component
| + | |
| − | |
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_for_segmentation_fault_when_emissions_are_turned_off|Prevent segmentation fault errors in HEMCO when emissions are turned off]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v10-01f|Add new functionality into HEMCO]]
| + | |
| − | *[[Ship_emissions#Bug_fixes_for_the_PARANOX_HEMCO_extension|Bug fixes for the PARANOX extension in HEMCO]]
| + | |
| − | *[[Regridding_in_GEOS-Chem#Error_in_regridding_regional_data_files|Bug fix for regridding of regional data files by HEMCO]]
| + | |
| − | *[[MEGAN v2.1 plus Guenther 2012 biogenic_emissions#Minor_bug_fix_in_MEGAN_Mono_extension|Prevent array out-of-bounds error if <tt>MEGAN_mono</tt> extension is turned off]]
| + | |
| − | *[[MEGAN_v2.1_plus_Guenther_2012_biogenic_emissions#Restore_missing_BIOGENIC_CO_diagnostics|Restore missing diagnostic: "Biogenic CO from monoterpenes"]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_during_the_public_comment_period_prior_to_v10-01_release|Additional HEMCO updates made during the v10-01 period of public comment]]
| + | |
| − | *[[GEOS-Chem_v10-01#Updated_name_of_ICOADS_SHIP_files_in_HEMCO_configuration_files|Fixed filename for ICOADS_SHIP in HEMCO configuration files]]
| + | |
| − | *[[GEOS-Chem v10-01#Avoid PARANOX SUNCOS error by using the proper timestamps|Fix for error in PARANOX caused by improper timestamps of SUNCOS]]
| + | |
| − | *[[GEOS-Chem_v10-01#Minor_fixes_for_FINNv1_biomass_burning|Minor fixes for FINNv1 biomass burning emissions]]
| + | |
| − | *[[GEOS-Chem_v10-01#Removing_additional_code_made_obsolete_by_HEMCO|Removing leftover code that was orphaned by HEMCO]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Removing computational bottlenecks
| + | |
| − | |
| + | |
| − | *[[Cloud convection#Removed array temporaries in call to FVDAS_CONVECT|Removed array temporaries in the call to the GEOS-4 convection routine]]
| + | |
| − | *[[GCAP#Removed_array_temporaries_in_call_to_GCAP_CONVECT|Removed array temporaries in the call to the GCAP convection routine]]
| + | |
| − | *[[Mercury#Remove_array_temporaries_in_routine_READ_HG2_PARTITIONING|Removed array temporaries in subroutine <tt>READ_HG2_PARTITIONING</tt>]]
| + | |
| − | *[[Advection_scheme_TPCORE#Reduce_time_spent_in_routine_TPCORE_FVDAS|Reduce time spent in advection driver routine TPCORE_FVDAS]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Miscellaneous
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v9-02#Incorrect_value_of_molecular_weight_for_the_PROPNN_tracer_in_input.geos|Now use correct value of molecular weight for PROPNN tracer]]
| + | |
| − | *[[Installing_libraries_for_GEOS-Chem#How_GEOS-Chem_uses_nc-config_and_nf-config|Make the netCDF library linking process more portable]]
| + | |
| − | *[[Regridding_in_GEOS-Chem#Fix_for_optimization_error_discovered_in_v10-01h|Fix for optimization error discovered in v10-01h]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fix_in_I3_field_interpolation|Bug fix for I3 field interpolation]]
| + | |
| − | *[[GEOS-Chem_v10-01#Minor_bug_fix_in_gamap_mod.F|Bug fix in gamap_mod.F]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fixes_for_the_PGI_compiler|Bug fixes for the PGI compiler]]
| + | |
| − | *[[GEOS-Chem_v10-01#Other miscellaneous updates|Now use "percent" instead of "%" in data files]]
| + | |
| − | | + | |
| − | |}
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] ([[User talk:Bmy|talk]]) 20:56, 26 October 2015 (UTC)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v9-02 ==
| + | |
| − | | + | |
| − | The following bugs and/or technical issues were resolved in GEOS-Chem v9-02. Also be sure to visit [[Known issues caused by compiler bugs|our ''Known issues caused by compiler bugs'' wiki page]] for a list of compiler-related issues and workarounds.
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| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
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| − | |-bgcolor="#CCCCCC"
| + | |
| − | !width="250px"|Module or area
| + | |
| − | !width="750px"|Issue that was resolved
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Emissions
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fix_for_updated_CAC_emissions|Bug fix for updated CAC emissions]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fix_for_Br2_emissions|Bug fix for Br2 emissions]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_in_regridding_of_anthropogenic_emissions|Bug fix in regridding of anthro emissions]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_in_MEGAN_emissions_when_running_with_MERRA_or_GEOS-FP|Bug in MEGAN emissions when using MERRA or GEOS-FP]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fix_in_nei2005_anthro_mod.F|Bug fix in nei2005_anthro_mod.F]]
| + | |
| − | *[[David_Streets_regional_emissions_for_China_and_SE_Asia#Bug_in_EMIS_STREETS_ANTHRO_05x0666|Bug fix in EMIS_STREETS_ANTHRO_05x0666]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fixes_in_biofuel_mod.F_and_emfossil.F|Bug fixes in biofuel_mod.F and emfossil.F]]
| + | |
| − | *[[GFED3_biomass_burning_emissions#Bug_fix_for_3-hourly_GFED3_emissions|Bug fix for 3-hourly GFED3 emissions]]
| + | |
| − | *[[Volcanic_SO2_emissions_from_Aerocom#Typo_in_VOLCPRESS_definition|Fixed typo in Aerocom volcanic SO2 emissions routine]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fixes_in_day-of-week_computation|Bug fixes in day-of-week computation]]
| + | |
| − | *[[Anthropogenic_emissions#Prevent_negative_emissions_over_Canada|Prevent negative emissions over Canada]]
| + | |
| − | *[[TOMAS_aerosol_microphysics#Minor_bug_in_TOMAS_sulfate_emissions|Minor bug fix in TOMAS sulfate emissions]]
| + | |
| − | *[[EPA/NEI05 North American emissions#Bug fix for NEI2005 SO4 emissions in sulfate_mod.F|Bug fix for NEI2005 SO4 emissions in sulfate_mod.F]]
| + | |
| − | *[[Hudman_et_al_2012_soil_NOx_emissions_algorithm#Prevent_LOG.280.29_error_from_occurring_in_soil_NOx_module|Prevent LOG(0) error from occurring in soil NOx module]]
| + | |
| − | *[[Historical_and_Future_Emissions#Bug_fix_for_BC.2FOC_biofuels_when_using_RCP_scenarios|Bug fix for biofuels when using RCP scenarios]]
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| − | | + | |
| − | |-valign="top"
| + | |
| − | |Dry deposition and wet deposition
| + | |
| − | |
| + | |
| − | *[[Acetone#DRYACET_is_missing_from_globchem.dat|Add missing DRYACET to globchem.dat mechanism file]]
| + | |
| − | *[[Wet_deposition#Bug_in_Henry.27s_constant|Bug fix in Henry's law constant]]
| + | |
| − | *[[Dry_deposition#Error_in_definition_of_RIP_and_IEPOX_drydep_species|Bug fix in definition of RIP, IEPOX drydep species]]
| + | |
| − | *[[Ship_emissions#Only_call_PARANOX_with_the_full-chemistry_simulations|Bug fix: Do not call PARANOX plume model for offline simulations]]
| + | |
| − | *[[Dry_deposition#Parallelization_error_in_routine_METERO|Fix for parallelization bug in subroutine METERO (in drydep module)]]
| + | |
| − | *[[Dry_deposition#Parallelization_error_in_routine_DRYFLX|Fixed parallelization error in routine DRYFLX (in dry deposition module)]]
| + | |
| − | *[[GEOS-Chem_v9-02#Prevent_bad_drydep_flux_values_from_being_passed_to_the_soil_NOx_emissions_module|Prevent bad drydep flux values from being passed to the soil NOx module]]
| + | |
| − | *[[Sea_salt_aerosols#Minor_bug_in_AD44_diagnostic_in_routine_DRY_DEPOSITION|Fixed minor bug in AD44 diagnostic in routine DRY DEPOSITION (sea salt aerosols)]]
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| − | | + | |
| − | |-valign="top"
| + | |
| − | |Met fields
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v9-02#Correction_for_GEOS-5_PBL_heights|Correction for GEOS-5 PBL heights]]
| + | |
| − | *[[GEOS-5 issues#Reset NaNs in MOISTQ to zero|Reset NaNs in MOISTQ to zero]]
| + | |
| − | *[[GEOS-Chem_v9-02#Convert_MERRA_and_GEOS-FP_relative_humidity_fields_to_percent_after_reading_from_disk|Convert MERRA and GEOS-FP relative humidity fields to percent after reading from disk]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fix_for_declaration_of_GEOS-FP_PFICU.2C_PFLCU.2C_PFILSAN.2C_PFLLSAN_fields|Bug fix for declaration of certain GEOS-FP met fields]]
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| − | | + | |
| − | |-valign="top"
| + | |
| − | |Computational efficiency
| + | |
| − | |
| + | |
| − | *[[Passing_array_arguments_efficiently_in_GEOS-Chem|Eliminate inefficient subroutine calls]]
| + | |
| − | *[[Numerical issues discovered in GEOS-Chem|Corrected several floating-point errors]]
| + | |
| − | *Eliminate array temporaries in [[Passing_array_arguments_efficiently_in_GEOS-Chem#pjc_pfix_mod.F|pjc_pfix_mod.F]] and [[Passing_array_arguments_efficiently_in_GEOS-Chem#pressure_mod.F|pressure_mod.F]]
| + | |
| − | *[[Passing_array_arguments_efficiently_in_GEOS-Chem#gcap_convect_mod.F|Eliminate array temporaries in GCAP convection module]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Diagnostics
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v9-01-03#Bug_fix_in_hdf_mod.F|Bug fix in hdf_mod.F]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fixes_in_diag48_mod.F|Bug fixes in diag48_mod.F]]
| + | |
| − | *[[Ship_emissions#Bug_in_ND36_diagnostic_when_ship_emissions_are_turned_off|Bug fix in ND36 diagnostic when ship emissions are turned off]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Specialty simulations (including microphysics)
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fixes_for_tagged_CO_simulation|Bug fixes for tagged CO simulation]]
| + | |
| − | *[[Mercury#Bug_fixes_for_nested_Hg_simulation|Bug fixes for nested Hg simulation]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fix_for_reading_OH_file_in_offline_simulations|Bug fix for reading OH file in offline simulations]]
| + | |
| − | *[[Aerosol-only_simulation#Emissions_not_included_when_using_non-local_PBL_mixing_scheme|Now include emissions in the aerosol-only simulation when using non-local PBL mixing]]
| + | |
| − | *[[Aerosol-only_simulation#Error_in_ISOROPIAII_when_sulfate_aerosols_are_turned_off|Avoid error in ISOROPIAII when using offline aerosol simulation]]
| + | |
| − | *[[Tagged_O3_simulation#Modifications_for_v9-02_tagged_O3_simulation|Modifications for v9-02 tagged O3 simulation]]
| + | |
| − | *[[CH4_simulation#Fixes_for_wetland_emissions|Fixes for wetland emissions in CH4 simulation]]
| + | |
| − | *[[Tagged_O3_simulation#Reactivate_stratospheric_P.28Ox.29_in_tagged_Ox_simulation|Reactivate stratospheric P(Ox) in tagged Ox simulation]]
| + | |
| − | *[[Tagged_O3_simulation#Replace_LD65_with_LLTROP_in_tagged_ox_mod.F|Replace LD65 with LLTROP in tagged_ox_mod.F]]
| + | |
| − | *[[TOMAS_aerosol_microphysics#Updates_for_GEOS-Chem_v9-02_public_release|Several fixes for TOMAS aerosol microphysics]]
| + | |
| − | *[[POPs_simulation#Prevent_error_when_reading_global_OC|Prevent error in POPs simulation when reading global OC]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Photolysis
| + | |
| − | |
| + | |
| − | *[[FAST-J photolysis mechanism#Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data|Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data]]
| + | |
| − | *[[Aerosol_optical_properties#Fix_to_jv_spec_aod.dat|Add fix to jv_spec_aod.dat file]]
| + | |
| − | *[[FAST-J photolysis mechanism#v9-02 post-release patch to fix bug in acetone photolysis pressure dependency|Post-release patch to fix bug in acetone photolysis pressure dependency]]
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |Miscellaneous
| + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v9-02#Additional_bug_fixes_for_MAP_A2A_regridding_algorithm|Additional bug fixes for MAP_A2A regridding]]
| + | |
| − | *[[Regridding_in_GEOS-Chem#Bug_in_grid_mod.F90|Bug fix in grid_mod.F90]]
| + | |
| − | *[[GCAP#Fixed_bugs_caused_by_GIGC_edits|Fixed typos in GCAP code]]
| + | |
| − | *[[Linoz stratospheric ozone chemistry#Reactivate parallel DO loop in LINOZ_CHEMO3|Reactivate parallel DO loop in LINOZ_CHEMO3 routine]]
| + | |
| − | *[[Boundary_layer_mixing#Corrected_unit_conversion_bug_in_calls_to_SET_CH3Br.2C_SET_BrO_for_TURBDAY_PBL_mixing|Corrected unit conversion bug when TURBDAY PBL mixing is used]]
| + | |
| − | *[[GEOS-Chem_v9-02#Fixes_for_minor_technical_issues|Fixes for minor technical issues]]
| + | |
| − | | + | |
| − | |}
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] ([[User talk:Bmy|talk]]) 21:00, 26 October 2015 (UTC)
| + | |
| − | | + | |
| − | == Bugs and fixes in older GEOS-Chem versions ==
| + | |
| | | | |
| − | For a complete list of bugs and fixes in older GEOS-Chem versions, please see [[Bugs and fixes prior to v9-02|our ''Bugs and fixes prior to v9-02'' wiki page]].
| + | *[[Bugs and fixes in GEOS-Chem 12.0.0 to 12.5.0]] |
| | + | *[[Bugs and fixes in GEOS-Chem v9, v10, and v11]] |
| | + | *[[Bugs and fixes in GEOS-Chem v7 and v8]] |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 17:40, 16 April 2015 (EDT) | + | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 14:23, 22 March 2021 (UTC) |
| − | --[[User:Bmy|Bob Y.]] 14:11, 20 May 2014 (EDT)
| + | |
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there.
