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| | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. | | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. |
| | | | |
| − | Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more general information about some frequently encountered errors. Also visit our [[Currently unresolved issues in GEOS-Chem]] wiki page to see a list of unresolved issues by GEOS-Chem version (and if they have been fixed in subsequent releases).
| + | == Bugs and fixes lists have now been migrated to Github == |
| | | | |
| − | == Issues resolved in GEOS-Chem v11-01 ==
| + | We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there. |
| | | | |
| − | The following bugs and/or technical issues were resolved in [[GEOS-Chem v11-01]]:
| + | === GEOS-Chem 13 === |
| | | | |
| − | {| border=1 cellspacing=0 cellpadding=5 | + | {| border=1 cellspacing=0 cellpadding=5 |
| | |-bgcolor="#CCCCCC" | | |-bgcolor="#CCCCCC" |
| − | !width="250px"|Module or area | + | !Version |
| − | !width="750px"|Issue that was resolved | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |[[GEOS-Chem chemistry mechanisms|Chemistry]] | + | |[[GEOS-Chem_model_development_priorities#13.3.0|13.3.0]] |
| − | |
| + | |TBD |
| − | *[[GEOS-Chem_v11-01#Update_of_PMN_.2B_O3_reaction_products_in_globchem.dat_file|Update of PMN + O3 reaction products in globchem.dat file]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[UCX_chemistry_mechanism#Fix_for_black_carbon_in_ucx_mod.F|Fix for black carbon in <tt>ucx_mod.F</tt>]]
| + | |[https://github.com/geoschem/geos-chem/milestone/19 '''Milestone 13.3.0'''] |
| − | *[[GEOS-Chem_v11-01#Modifications_to_ND20_to_archive_afternoon_P.28O3.29_and_L.28O3.29|Modifications to ND20 to archive afternoon P(O3) and L(O3)]]
| + | |
| − | *[[Sulfate_aerosols#Bug_fix_for_sea_salt_alkalinity_in_sulfate_mod.F|Bug fix for sea salt alkalinity in <tt>sulfate_mod.F</tt>]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fix_for_offline_dust_aerosols_when_UCX_is_on|Bug fix for offline dust aerosols when UCX is on]]
| + | |
| − | *[[Mineral_dust_aerosols#Bug_fixes_for_hydrophobic_aerosol_properties|Bug fixes for hydrophobic aerosol properties]]
| + | |
| − | *[[New_isoprene_scheme#Syntax_error_in_globchem.dat_file_for_MOBA_reaction_rate|Fix syntax error in <tt>globchem.dat</tt> for the MOBA + OH —> MOBAOO reaction rate]]
| + | |
| − | *[[New_isoprene_scheme#Bug_in_reaction_ISNOOA_.2B_NO2_in_globchem.dat|Fixed typo in the ISNOOA + NO2 -> PMN reaction rate in <tt>globchem.dat</tt>]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |[[Cloud convection]] | + | |[[GEOS-Chem_model_development_priorities#13.2.0|13.2.0]] |
| − | | | + | |TBD |
| − | *[[Cloud_convection#Fixed bug in DO_MERRA_CONVECTION affecting mass conservation|Correct bug in below cloud average mixing ratio calculation in DO_MERRA_CONVECTION to improve mass balance]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Cloud_convection#Resolve_very_high_tracer_concentrations_in_MERRA_and_GEOS-FP_convective_scavenging|Resolve very high tracer concentrations in GEOS-FP and MERRA convective scavenging]]
| + | |[https://github.com/geoschem/geos-chem/milestone/18 '''Milestone 13.2.0'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |[[HEMCO data directories|Emissions (via HEMCO)]] | + | |[[GEOS-Chem 13.1.0|13.1.0]] |
| − | | | + | |TBD |
| − | *[[Lightning_NOx_emissions#Correct_problem_in_OTD-LIS_local_redistribution_files|Fix problem in OTD/LIS lighning redistribution files]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-Chem_v10-01#Fix_for_reading_hourly_NEI2011_emissions|Fix for reading hourly NEI2011 emissions]]
| + | |[https://github.com/geoschem/geos-chem/milestone/17 '''Milestone 13.1.0'''] |
| − | *[[EMEP_European_anthropogenic_emissions#Zero_EMEP_emissions_at_30N_for_2x25_and_higher_resolutions|Use an updated EMEP mask file to prevent zero emissions at 30 N for 2° x 2.5° or higher resolutions]]
| + | |
| − | *[[Secondary_organic_aerosols#Incorrect_concentrations_in_SOA-SVPOA_simulation|Fix an emissions error in the SOA-SVPOA simulation]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_missing_pointer_in_call_to_HCO_CalcVertGrid|Fixed missing pointer in call to HEMCO routine Hco_CalcVertGrid]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_bug_preventing_HEMCO_from_writing_restart_files_more_than_once_per_run|Fixed bug preventing HEMCO from writing restart files more than once per run]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Met fields and derived quantities | + | |[[GEOS-Chem 13.0.2|13.0.2]] |
| − | |
| + | |12 Apr 2021 |
| − | *[[Air_Quantity_Updates_for_v11-01|Incorporate moisture into air quantities, tracer units, and tracer unit conversions]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-Chem_tracer_units#Updating_Air_Quantities|Bug fix to update air quantities after specific humidity is updated in non-local PBL mixing]]
| + | |[https://github.com/geoschem/geos-chem/milestone/21?closed=1 '''Milestone 13.0.2'''] |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |[[RRTMG|RRTMG radiative transfer model]] | + | |[[GEOS-Chem 13.0.1|13.0.1]] |
| − | | | + | |23 Mar 2021 |
| − | *[[RRTMG#Fix_bug_that_prevents_storage_of_O3_and_CH4_RFs|Fix bug that prevents storage of O3 and CH4 RF's]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Coupling_GEOS-Chem_with_RRTMG#Bug_in_RRTMG_array_sizes|Bug fix in RRTMG array sizes]]
| + | |[https://github.com/geoschem/geos-chem/milestone/20?closed=1 '''Milestone 13.0.1'''] |
| − | *[[Coupling_GEOS-Chem_with_RRTMG#Bug_fixes_in_rrtmg_rad_transfer_mod.F|Further bug fixes in <tt>rrtmg_transfer_mod.F</tt>]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Specialty simulations | + | |width="80px"|[[GEOS-Chem 13.0.0|13.0.0]] |
| − | | | + | |width="100px"|18 Mar 2021 |
| − | *[[Mercury#Hg_ocean_MLD_bug_fixes|Bug fixes for computing MLD in <tt>ocean_mercury_mod.F</tt>]]
| + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[CO2_simulation#Additional_Update_and_Bug_Fix|Update CO2 emission files]]
| + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/8?closed=1 '''Milestone 13.0.0'''] |
| − | *[[GEOS-Chem_v10-01#Bug_in_European_grid_range_for_tagged_Ox_simulation|Bug fix in European grid range for tagged O3 simulation]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fix_for_PBLTOP_and_MTTOP_values_in_tagged_ozone_simulation|Bug fix for PBLTOP and MTTOP values in tagged O3 simulation]]
| + | |
| − | *[[Mercury#Bug_Fixes_to_v11-01c_Hg_Updates|Bug fixes for Arctic Hg updates in v11-01c]]
| + | |
| − | *[[Mercury#Correct_too-high_emissions_of_Hg2_over_China_and_EU|Correct too-high emissions of Hg2 over China and EU]]
| + | |
| − | *[[Rn-Pb-Be_simulation#Typo_in_HEMCO_extension_module_hcox_gc_RnPbBe_mod.F90|Fix typo in HEMCO extension module <tt>hcox_gc_RnPbBe_mod.F90</tt>]]
| + | |
| − | *[[Mercury#Parallelization_bug_fixes_for_GEOS-5_Hg_simulations|Fix parallelization errors that prevented Hg simulations from passing unit tests]]
| + | |
| − | *[[Mercury#Avoid_floating-point_exception_in_OCEAN_MERCURY_READ|Avoid floating-point exception in OCEAN_MERCURY_READ]]
| + | |
| | | | |
| − | |-valign="top"
| |
| − | |Structural updates
| |
| − | |
| |
| − | *[[PGI_compiler#File_Linking_Error|Fix linker error when using the PGI compiler]]
| |
| − | *[[GEOS-Chem_v11-01#Bug_fixes_for_the_ND21_diagnostic|Bug fix for the ND21 diagnostic]]
| |
| − | *[[GEOS-Chem_v11-01#Bug_fix_for_custom_grid_in_tpcore_bc_mod.F|Bug fix for custom nested grid in <tt>tpcore_bc_mod.F</tt>]]
| |
| − | *[[MEGAN_v2.1_plus_Guenther_2012_biogenic_emissions#Bug_fix_for_monoterpenes_in_ND46_diagnostic|Bug fix for monoterpenes in ND46 diagnostic]]
| |
| − | *[[Aerosol_emissions#Online_emission_of_marine_primary_organic_aerosol_.28POA.29|Parallelization bug fix for marine POA]]
| |
| − | *[[Physical_properties_of_GEOS-Chem_species#Discrepancies_found_in_the_dry_deposition_module|Remove inconsistencies in the definitions of physical properties of GEOS-Chem species]];
| |
| − | *[[Sea_salt_aerosols#Molecular_weight_discrepancy_in_drydep_mod.F|Use proper molecular weights for sea salt aerosols in the dry deposition module]];
| |
| − | *[[Sulfate_aerosols#Give_SO4s_and_NITs_the_same_molecular_weight_as_SALC|Give SO4s and NITs the same molecular weight as SALC]];
| |
| − | *[[GEOS-Chem_species_database#Defining_molecular_weight_fields_of_the_Input_Opt_object_from_the_species_database|Define molecular weight fields of the <tt>Input_Opt</tt> object from the species database]]
| |
| − | *[[Physical_constants|Now use consistent physical parameter values throughout GEOS-Chem]]
| |
| − | *[[PGI_compiler#Updates_for_GEOS-Chem_v11-01|Add further fixes for compiling GEOS-Chem with PGI Fortran]]
| |
| − | *[[Centralized_chemistry_time_step#Optimal_Configuration|Adopt the optimal timestep recommendations of Philip et al 2015]]
| |
| − | *[[GEOS-Chem_v11-01#Do_not_nullify_local_pointers_in_the_same_line_where_they_are_declared|Do not nullify local pointers in the same line where they are declared]]
| |
| − |
| |
| − | |-valign="top"
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| − | |[[Wet deposition]]
| |
| − | |
| |
| − | *[[Mineral_dust_aerosols#Now_treat_DST2-DST4_as_coarse_mode_in_wet_scavenging|Now treat DST2-DST4 as coarse mode in wet scavenging]]
| |
| − | **NOTE: This also will apply to dust uptake tracers DSTAL2-4, NITD2-4, SO4D2-4
| |
| − | *[[Wet_deposition#Low_tropospheric_210Pb_lifetime_against_deposition_in_v11-01b|Quick fix for low tropospheric 210Pb lifetime against wet deposition]]
| |
| − |
| |
| − | |-valign="top"
| |
| − | |Structural
| |
| − | |
| |
| − | *[[PGI_compiler#Updates_for_GEOS-Chem_v11-01|Additional updates compiling GEOS-Chem with the PGI Fortran compiler]]
| |
| − | *[[Physical_constants|Now use consistent physical constant declarations]]
| |
| − | *[[GEOS-Chem_Output_Files#NetCDF_File_Format|Migration from bpch to netCDF output file format]]
| |
| | |} | | |} |
| | | | |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 16:39, 6 May 2016 (UTC)
| + | === GEOS-Chem 12 === |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v10-01 == | + | |
| − | | + | |
| − | The following bugs and/or technical issues were resolved in [[GEOS-Chem v10-01]]:
| + | |
| | | | |
| − | {| border=1 cellspacing=0 cellpadding=5 | + | {| border=1 cellspacing=0 cellpadding=5 |
| | |-bgcolor="#CCCCCC" | | |-bgcolor="#CCCCCC" |
| − | !width="250px"|Module or area | + | !Version |
| − | !width="750px"|Issue that was resolved | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Stratospheric chemistry module | + | |[[GEOS-Chem 12#12.9.3|12.9.3]] |
| − | |
| + | |06 Aug 2020 |
| − | *[[Stratospheric_chemistry#Reduce_memory_footprint_of_the_stratospheric_chemistry_module|Reduce memory footprint of the stratospheric chemistry module]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Stratospheric_chemistry#Bug_fix_in_routine_GET_RATES_INTERP|Bug fix in GET_RATES_INTERP]]
| + | |[https://github.com/geoschem/geos-chem/milestone/16?closed=1 '''Milestone 12.9.3'''] |
| − | *[[Bromine_chemistry_mechanism#Bugs_in_data_files_used_to_prescribe_stratospheric_Bry|Now read corrected stratospheric Bry data via HEMCO]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Photolysis | + | |[[GEOS-Chem 12#12.9.2|12.9.2]] |
| − | |
| + | |24 Jul 2020 |
| − | *[[FAST-J photolysis mechanism#Now_use_MAP_A2A_to_regrid_1x1_TOMS_O3_to_model_resolution|Now use MAP_A2A to regrid 1x1 TOMS O3 to model resolution]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[FAST-J photolysis_mechanism#Bug_fix_for_determining_when_to_use_TOMS_O3_columns|Bug fix for determining when to use TOMS O3 columns]]
| + | |[https://github.com/geoschem/geos-chem/milestone/15?closed=1 '''Milestone 12.9.2'''] |
| − | *[[Development_of_Fast-JX_in_GEOS-Chem#Reactivation_of_bromine_species_photolysis_for_tropospheric_simulation|Reactivation of Br species photolysis in Fast-JX for tropospheric chemistry simulation]]
| + | |
| − | *[[Development_of_Fast-JX_in_GEOS-Chem#Error_in_reducing_wavelength_bins_for_tropospheric_simulation|Fixed wavelength bin interpolation error in Fast-JX for tropospheric-only simulation]]
| + | |
| − | *[[FAST-JX_v7.0_photolysis_mechanism#Now_use_proper_org.dat_file_with_data_for_multiple_wavelengths|Now use proper photolysis input file <tt>org.dat</tt>]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |NOx-Ox chemistry and nested grid simulations | + | |[[GEOS-Chem 12#12.9.1|12.9.1]] |
| − | |
| + | |17 Jul 2020 |
| − | *[[UCX_chemistry_mechanism#Modify_treatment_of_N2O5_.2B_H2O_reaction_in_calcrate.F|Modify treatment of N2O5+H2O reaction in calcrate.F]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Setting_up_GEOS-Chem_nested_grid_simulations#Parallelization_error_in_nested_grid_simulations|Fixed parallelization error in nested grid simulations]]
| + | |[https://github.com/geoschem/geos-chem/milestone/14?closed=1 '''Milestone 12.9.1'''] |
| − | *[[Ship_emissions#Fix_for_high_values_of_O3_dry_deposition|Fix for high values of O3 dry deposition]]
| + | |
| − | *[[New_isoprene_scheme#Remove_duplicate_GLYX_product_from_RIO2_reaction|Remove duplicate GLYX product from RIO2 reaction]]
| + | |
| − | *[[Sea_salt_aerosols#Bug_in_ND44_drydep_diagnostic_for_sea_salt_aerosols|Bug fix in ND44 drydep diagnostic for sea salt aerosols]]
| + | |
| − | *[[FAST-JX_v7.0_photolysis_mechanism#Final_recommendation_for_J.28HAC.29_and_J.28PAN.29|Implement final recommendation for J(HAC) and J(PAN)]]
| + | |
| − | *[[FAST-JX_v7.0_photolysis_mechanism#Acetaldehyde_photolysis|Now use updated cross-sections for computing J(ALD2)]]
| + | |
| − | *[[Nested_Model_Working_Group#Bug_fixes_for_the_0.25x0.3125_nested_CH_simulation|Resolved technical issues for 0.25° x 0.3125° CH nested simulation]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fixes_and_and_updates_for_v10-01g|Bug fix for planeflight diagnostic when using chemistry timesteps < 15 min]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fixes_and_updates_for_v10-01i|Now call the planeflight diagnostic after chemistry, not after emissions]]
| + | |
| − | *[[Wet_deposition#Bug_fixes_for_scavenging_by_co-condensation|Bug fixes for wet scavenging by co-condensation]]
| + | |
| − | *[[Wet_deposition#Bugs_in_MERRA_wet_deposition|Fixes for bugs in wet deposition when using MERRA meteorology]]
| + | |
| − | *[[Dry_deposition#Remove_obsolete_ISN2_drydep_species|Remove obsolete ISN2 drydep species]]
| + | |
| − | *[[GEOS-Chem_v10-01#Fixed_typo_for_BROMOCARB_SEASON_in_HEMCO_configuration_files|Fixed typo for BROMOCARB_SEASON in HEMCO configuration files]]
| + | |
| − | *[[GEOS-Chem_v10-01#Fixes_for_the_0.25_x_0.3125_nested_EU_simulation_using_GEOS-FP_meteorology|Bug fixes for GEOS-FP nested EU simulation]]
| + | |
| − | *[[GEOS-Chem_v10-01#Additional_fixes_for_MERRA_wet_deposition|Fixes for wet deposition when using MERRA met fields]]
| + | |
| − | *[[GEOS-Chem_v10-01#Fix_AEFs_for_sesquiterpenes_in_the_SOA_simulation|Fix MEGAN AEF's for sesquiterpenes in the SOA simulation]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Specialty simulations | + | |[[GEOS-Chem 12#12.9.0|12.9.0]] |
| − | |
| + | |17 Jul 2020 |
| − | *[[TOMAS_aerosol_microphysics#Reactivating_dust_tracers_in_TOMAS_simulations|Reactivating dust tracers in TOMAS simulations]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[TOMAS_aerosol_microphysics#Prevent_sea_salt_from_being_emitted_over_ice_in_TOMAS|Prevent sea salt from being emitted over ice in TOMAS]]
| + | |[https://github.com/geoschem/geos-chem/milestone/10?closed=1 '''Milestone 12.9.0'''] |
| − | *[[TOMAS_aerosol_microphysics#Fix_for_ND61_diagnostic|Fix for ND61 diagnostic in TOMAS simulations]]
| + | |
| − | *[[Global_Terrestrial_Mercury_Model#Fixed_library_linking_issue_when_building_GTMM_into_GEOS-Chem|Fixed library linking issue when building GTMM into GEOS-Chem]]
| + | |
| − | *[[CH4_simulation#Minor_fixes_to_CH4_simulation_for_MERRA_meteorology|Minor fixes to CH4 simulation for MERRA meteorology]]
| + | |
| − | *[[POPs_simulation#Avoid_div-by-zero_errors_in_POPs_simulation|Avoid div-by-zero errors in POPs simulation]]
| + | |
| − | *[[Tagged_CO_simulation#Bug_fixes_and_updates_for_tagged_CO_in_v9-02|Bug fixes and updates for tagged CO simulation in v9-02]]
| + | |
| − | *[[Mercury#Bug_in_tagged_Hg_emissions_in_v9-02|Fixed bug in tagged Hg emissions]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |HEMCO emissions component | + | |[[GEOS-Chem 12#12.8.2|12.8.2]] |
| − | |
| + | |27 May 2020 |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_for_segmentation_fault_when_emissions_are_turned_off|Prevent segmentation fault errors in HEMCO when emissions are turned off]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v10-01f|Add new functionality into HEMCO]]
| + | |[https://github.com/geoschem/geos-chem/milestone/13?closed=1 '''Milestone 12.8.2'''] |
| − | *[[Ship_emissions#Bug_fixes_for_the_PARANOX_HEMCO_extension|Bug fixes for the PARANOX extension in HEMCO]]
| + | |
| − | *[[Regridding_in_GEOS-Chem#Error_in_regridding_regional_data_files|Bug fix for regridding of regional data files by HEMCO]]
| + | |
| − | *[[MEGAN v2.1 plus Guenther 2012 biogenic_emissions#Minor_bug_fix_in_MEGAN_Mono_extension|Prevent array out-of-bounds error if <tt>MEGAN_mono</tt> extension is turned off]]
| + | |
| − | *[[MEGAN_v2.1_plus_Guenther_2012_biogenic_emissions#Restore_missing_BIOGENIC_CO_diagnostics|Restore missing diagnostic: "Biogenic CO from monoterpenes"]]
| + | |
| − | *[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_during_the_public_comment_period_prior_to_v10-01_release|Additional HEMCO updates made during the v10-01 period of public comment]]
| + | |
| − | *[[GEOS-Chem_v10-01#Updated_name_of_ICOADS_SHIP_files_in_HEMCO_configuration_files|Fixed filename for ICOADS_SHIP in HEMCO configuration files]]
| + | |
| − | *[[GEOS-Chem v10-01#Avoid PARANOX SUNCOS error by using the proper timestamps|Fix for error in PARANOX caused by improper timestamps of SUNCOS]]
| + | |
| − | *[[GEOS-Chem_v10-01#Minor_fixes_for_FINNv1_biomass_burning|Minor fixes for FINNv1 biomass burning emissions]]
| + | |
| − | *[[GEOS-Chem_v10-01#Removing_additional_code_made_obsolete_by_HEMCO|Removing leftover code that was orphaned by HEMCO]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Removing computational bottlenecks | + | |[[GEOS-Chem 12#12.8.1|12.8.1]] |
| − | |
| + | |21 May 2020 |
| − | *[[Cloud convection#Removed array temporaries in call to FVDAS_CONVECT|Removed array temporaries in the call to the GEOS-4 convection routine]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GCAP#Removed_array_temporaries_in_call_to_GCAP_CONVECT|Removed array temporaries in the call to the GCAP convection routine]]
| + | |[https://github.com/geoschem/geos-chem/milestone/12?closed=1 '''Milestone 12.8.1'''] |
| − | *[[Mercury#Remove_array_temporaries_in_routine_READ_HG2_PARTITIONING|Removed array temporaries in subroutine <tt>READ_HG2_PARTITIONING</tt>]]
| + | |
| − | *[[Advection_scheme_TPCORE#Reduce_time_spent_in_routine_TPCORE_FVDAS|Reduce time spent in advection driver routine TPCORE_FVDAS]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Miscellaneous | + | |[[GEOS-Chem 12#12.8.0|12.8.0]] |
| − | |
| + | |04 Mar 2020 |
| − | *[[GEOS-Chem_v9-02#Incorrect_value_of_molecular_weight_for_the_PROPNN_tracer_in_input.geos|Now use correct value of molecular weight for PROPNN tracer]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Installing_libraries_for_GEOS-Chem#How_GEOS-Chem_uses_nc-config_and_nf-config|Make the netCDF library linking process more portable]]
| + | |[https://github.com/geoschem/geos-chem/milestone/7?closed=1 '''Milestone 12.8.0'''] |
| − | *[[Regridding_in_GEOS-Chem#Fix_for_optimization_error_discovered_in_v10-01h|Fix for optimization error discovered in v10-01h]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fix_in_I3_field_interpolation|Bug fix for I3 field interpolation]]
| + | |
| − | *[[GEOS-Chem_v10-01#Minor_bug_fix_in_gamap_mod.F|Bug fix in gamap_mod.F]]
| + | |
| − | *[[GEOS-Chem_v10-01#Bug_fixes_for_the_PGI_compiler|Bug fixes for the PGI compiler]]
| + | |
| − | *[[GEOS-Chem_v10-01#Other miscellaneous updates|Now use "percent" instead of "%" in data files]]
| + | |
| − | | + | |
| − | |}
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] ([[User talk:Bmy|talk]]) 20:56, 26 October 2015 (UTC)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v9-02 ==
| + | |
| − | | + | |
| − | The following bugs and/or technical issues were resolved in GEOS-Chem v9-02.
| + | |
| − | | + | |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
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| − | |-bgcolor="#CCCCCC"
| + | |
| − | !width="250px"|Module or area
| + | |
| − | !width="750px"|Issue that was resolved
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Emissions | + | |[[GEOS-Chem 12#12.7.2|12.7.2]] |
| − | |
| + | |09 Mar 2020 |
| − | *[[GEOS-Chem_v9-02#Bug_fix_for_updated_CAC_emissions|Bug fix for updated CAC emissions]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-Chem_v9-02#Bug_fix_for_Br2_emissions|Bug fix for Br2 emissions]]
| + | |[https://github.com/geoschem/geos-chem/milestone/11?closed=1 '''Milestone 12.7.2'''] |
| − | *[[GEOS-Chem_v9-02#Bug_in_regridding_of_anthropogenic_emissions|Bug fix in regridding of anthro emissions]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_in_MEGAN_emissions_when_running_with_MERRA_or_GEOS-FP|Bug in MEGAN emissions when using MERRA or GEOS-FP]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fix_in_nei2005_anthro_mod.F|Bug fix in nei2005_anthro_mod.F]]
| + | |
| − | *[[David_Streets_regional_emissions_for_China_and_SE_Asia#Bug_in_EMIS_STREETS_ANTHRO_05x0666|Bug fix in EMIS_STREETS_ANTHRO_05x0666]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fixes_in_biofuel_mod.F_and_emfossil.F|Bug fixes in biofuel_mod.F and emfossil.F]]
| + | |
| − | *[[GFED3_biomass_burning_emissions#Bug_fix_for_3-hourly_GFED3_emissions|Bug fix for 3-hourly GFED3 emissions]]
| + | |
| − | *[[Volcanic_SO2_emissions_from_Aerocom#Typo_in_VOLCPRESS_definition|Fixed typo in Aerocom volcanic SO2 emissions routine]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fixes_in_day-of-week_computation|Bug fixes in day-of-week computation]]
| + | |
| − | *[[Anthropogenic_emissions#Prevent_negative_emissions_over_Canada|Prevent negative emissions over Canada]]
| + | |
| − | *[[TOMAS_aerosol_microphysics#Minor_bug_in_TOMAS_sulfate_emissions|Minor bug fix in TOMAS sulfate emissions]]
| + | |
| − | *[[EPA/NEI05 North American emissions#Bug fix for NEI2005 SO4 emissions in sulfate_mod.F|Bug fix for NEI2005 SO4 emissions in sulfate_mod.F]]
| + | |
| − | *[[Hudman_et_al_2012_soil_NOx_emissions_algorithm#Prevent_LOG.280.29_error_from_occurring_in_soil_NOx_module|Prevent LOG(0) error from occurring in soil NOx module]]
| + | |
| − | *[[Historical_and_Future_Emissions#Bug_fix_for_BC.2FOC_biofuels_when_using_RCP_scenarios|Bug fix for biofuels when using RCP scenarios]]
| + | |
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| − | |Dry deposition and wet deposition | + | |[[GEOS-Chem 12#12.7.1|12.7.1]] |
| − | |
| + | |19 Feb 2020 |
| − | *[[Acetone#DRYACET_is_missing_from_globchem.dat|Add missing DRYACET to globchem.dat mechanism file]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Wet_deposition#Bug_in_Henry.27s_constant|Bug fix in Henry's law constant]]
| + | |[https://github.com/geoschem/geos-chem/milestone/9?closed=1 '''Milestone 12.7.1'''] |
| − | *[[Dry_deposition#Error_in_definition_of_RIP_and_IEPOX_drydep_species|Bug fix in definition of RIP, IEPOX drydep species]]
| + | |
| − | *[[Ship_emissions#Only_call_PARANOX_with_the_full-chemistry_simulations|Bug fix: Do not call PARANOX plume model for offline simulations]]
| + | |
| − | *[[Dry_deposition#Parallelization_error_in_routine_METERO|Fix for parallelization bug in subroutine METERO (in drydep module)]]
| + | |
| − | *[[Dry_deposition#Parallelization_error_in_routine_DRYFLX|Fixed parallelization error in routine DRYFLX (in dry deposition module)]]
| + | |
| − | *[[GEOS-Chem_v9-02#Prevent_bad_drydep_flux_values_from_being_passed_to_the_soil_NOx_emissions_module|Prevent bad drydep flux values from being passed to the soil NOx module]]
| + | |
| − | *[[Sea_salt_aerosols#Minor_bug_in_AD44_diagnostic_in_routine_DRY_DEPOSITION|Fixed minor bug in AD44 diagnostic in routine DRY DEPOSITION (sea salt aerosols)]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Met fields | + | |[[GEOS-Chem 12#12.7.0|12.7.0]] |
| − | |
| + | |03 Feb 2020 |
| − | *[[GEOS-Chem_v9-02#Correction_for_GEOS-5_PBL_heights|Correction for GEOS-5 PBL heights]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-5 issues#Reset NaNs in MOISTQ to zero|Reset NaNs in MOISTQ to zero]]
| + | |[https://github.com/geoschem/geos-chem/milestone/4?closed=1 '''Milestone 12.7.0'''] |
| − | *[[GEOS-Chem_v9-02#Convert_MERRA_and_GEOS-FP_relative_humidity_fields_to_percent_after_reading_from_disk|Convert MERRA and GEOS-FP relative humidity fields to percent after reading from disk]]
| + | |
| − | *[[GEOS-Chem_v9-02#Bug_fix_for_declaration_of_GEOS-FP_PFICU.2C_PFLCU.2C_PFILSAN.2C_PFLLSAN_fields|Bug fix for declaration of certain GEOS-FP met fields]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Computational efficiency | + | |[[GEOS-Chem 12#12.6.3|12.6.3]] |
| − | |
| + | |25 Nov 2019 |
| − | *[[Passing_array_arguments_efficiently_in_GEOS-Chem|Eliminate inefficient subroutine calls]]
| + | |[https://github.com/geoschem/gchp geoschem/gchp] |
| − | *[[Numerical issues discovered in GEOS-Chem|Corrected several floating-point errors]]
| + | |[https://github.com/geoschem/gchp/milestone/2?closed=1 '''Milestone 12.6.3'''] |
| − | *Eliminate array temporaries in [[Passing_array_arguments_efficiently_in_GEOS-Chem#pjc_pfix_mod.F|pjc_pfix_mod.F]] and [[Passing_array_arguments_efficiently_in_GEOS-Chem#pressure_mod.F|pressure_mod.F]]
| + | |
| − | *[[Passing_array_arguments_efficiently_in_GEOS-Chem#gcap_convect_mod.F|Eliminate array temporaries in GCAP convection module]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Diagnostics | + | |[[GEOS-Chem 12#12.6.2|12.6.2]] |
| − | |
| + | |15 Nov 2019 |
| − | *[[GEOS-Chem_v9-01-03#Bug_fix_in_hdf_mod.F|Bug fix in hdf_mod.F]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[GEOS-Chem_v9-02#Bug_fixes_in_diag48_mod.F|Bug fixes in diag48_mod.F]]
| + | |[https://github.com/geoschem/geos-chem/milestone/6?closed=1 '''Milestone 12.6.2'''] |
| − | *[[Ship_emissions#Bug_in_ND36_diagnostic_when_ship_emissions_are_turned_off|Bug fix in ND36 diagnostic when ship emissions are turned off]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Specialty simulations (including microphysics) | + | |[[GEOS-Chem 12#12.6.1|12.6.1]] |
| − | |
| + | |28 Oct 2019 |
| − | *[[GEOS-Chem_v9-02#Bug_fixes_for_tagged_CO_simulation|Bug fixes for tagged CO simulation]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Mercury#Bug_fixes_for_nested_Hg_simulation|Bug fixes for nested Hg simulation]]
| + | |[https://github.com/geoschem/geos-chem/milestone/5?closed=1 '''Milestone 12.6.1'''] |
| − | *[[GEOS-Chem_v9-02#Bug_fix_for_reading_OH_file_in_offline_simulations|Bug fix for reading OH file in offline simulations]]
| + | |
| − | *[[Aerosol-only_simulation#Emissions_not_included_when_using_non-local_PBL_mixing_scheme|Now include emissions in the aerosol-only simulation when using non-local PBL mixing]]
| + | |
| − | *[[Aerosol-only_simulation#Error_in_ISOROPIAII_when_sulfate_aerosols_are_turned_off|Avoid error in ISOROPIAII when using offline aerosol simulation]]
| + | |
| − | *[[Tagged_Ox_simulation#Modifications_for_v9-02_tagged_O3_simulation|Modifications for v9-02 tagged O3 simulation]]
| + | |
| − | *[[CH4_simulation#Fixes_for_wetland_emissions|Fixes for wetland emissions in CH4 simulation]]
| + | |
| − | *[[Tagged_Ox_simulation#Reactivate_stratospheric_P.28Ox.29_in_tagged_Ox_simulation|Reactivate stratospheric P(Ox) in tagged Ox simulation]]
| + | |
| − | *[[Tagged_Ox_simulation#Replace_LD65_with_LLTROP_in_tagged_ox_mod.F|Replace LD65 with LLTROP in tagged_ox_mod.F]]
| + | |
| − | *[[TOMAS_aerosol_microphysics#Updates_for_GEOS-Chem_v9-02_public_release|Several fixes for TOMAS aerosol microphysics]]
| + | |
| − | *[[POPs_simulation#Prevent_error_when_reading_global_OC|Prevent error in POPs simulation when reading global OC]]
| + | |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |Photolysis | + | |width="80px"|[[GEOS-Chem 12#12.6.0|12.6.0]] |
| − | | | + | |width="100px"|18 Oct 2019 |
| − | *[[FAST-J photolysis mechanism#Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data|Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data]]
| + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | *[[Aerosol_optical_properties#Fix_to_jv_spec_aod.dat|Add fix to jv_spec_aod.dat file]]
| + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/2?closed=1 '''Milestone 12.6.0'''] |
| − | *[[FAST-J photolysis mechanism#v9-02 post-release patch to fix bug in acetone photolysis pressure dependency|Post-release patch to fix bug in acetone photolysis pressure dependency]]
| + | |
| − | | + | |
| − | |-valign="top" | + | |
| − | |Miscellaneous | + | |
| − | |
| + | |
| − | *[[GEOS-Chem_v9-02#Additional_bug_fixes_for_MAP_A2A_regridding_algorithm|Additional bug fixes for MAP_A2A regridding]]
| + | |
| − | *[[Regridding_in_GEOS-Chem#Bug_in_grid_mod.F90|Bug fix in grid_mod.F90]]
| + | |
| − | *[[GCAP#Fixed_bugs_caused_by_GIGC_edits|Fixed typos in GCAP code]]
| + | |
| − | *[[Linoz stratospheric ozone chemistry#Reactivate parallel DO loop in LINOZ_CHEMO3|Reactivate parallel DO loop in LINOZ_CHEMO3 routine]]
| + | |
| − | *[[Boundary_layer_mixing#Corrected_unit_conversion_bug_in_calls_to_SET_CH3Br.2C_SET_BrO_for_TURBDAY_PBL_mixing|Corrected unit conversion bug when TURBDAY PBL mixing is used]]
| + | |
| − | *[[GEOS-Chem_v9-02#Fixes_for_minor_technical_issues|Fixes for minor technical issues]]
| + | |
| | | | |
| | |} | | |} |
| | | | |
| − | --[[User:Bmy|Bob Y.]] ([[User talk:Bmy|talk]]) 21:00, 26 October 2015 (UTC) | + | == Bugs and fixes in older GEOS-Chem versions == |
| | | | |
| − | == Bugs and fixes in older GEOS-Chem versions ==
| + | For a complete list of bugs and fixes in older GEOS-Chem versions, please see: |
| | | | |
| − | For a complete list of bugs and fixes in older GEOS-Chem versions, please see [[Bugs and fixes prior to v9-02|our ''Bugs and fixes prior to v9-02'' wiki page]].
| + | *[[Bugs and fixes in GEOS-Chem 12.0.0 to 12.5.0]] |
| | + | *[[Bugs and fixes in GEOS-Chem v9, v10, and v11]] |
| | + | *[[Bugs and fixes in GEOS-Chem v7 and v8]] |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 17:40, 16 April 2015 (EDT) | + | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 14:23, 22 March 2021 (UTC) |
| − | --[[User:Bmy|Bob Y.]] 14:11, 20 May 2014 (EDT)
| + | |
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there.
