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| | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. | | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. |
| | | | |
| − | Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more general information about some frequently encountered errors. Also visit our [[Currently unresolved issues in GEOS-Chem]] wiki page to see a list of unresolved issues by GEOS-Chem version (and if they have been fixed in subsequent releases).
| + | == Bugs and fixes lists have now been migrated to Github == |
| | | | |
| − | == Issues resolved in GEOS-Chem v10-01 ==
| + | We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there. |
| | | | |
| − | #Fixes for the stratospheric chemistry module:
| + | === GEOS-Chem 13 === |
| − | ##[[Stratospheric_chemistry#Reduce_memory_footprint_of_the_stratospheric_chemistry_module|Reduce memory footprint of the stratospheric chemistry module]]
| + | |
| − | ##[[Stratospheric_chemistry#Bug_fix_in_routine_GET_RATES_INTERP|Bug fix in GET_RATES_INTERP]]
| + | |
| − | ##[[Bromine_chemistry_mechanism#Bugs_in_data_files_used_to_prescribe_stratospheric_Bry|Now read corrected stratospheric Bry data via HEMCO]]
| + | |
| − | #Fixes for the photolysis mechanism:
| + | |
| − | ##[[FAST-J photolysis mechanism#Now_use_MAP_A2A_to_regrid_1x1_TOMS_O3_to_model_resolution|Now use MAP_A2A to regrid 1x1 TOMS O3 to model resolution]]
| + | |
| − | ##[[FAST-J photolysis_mechanism#Bug_fix_for_determining_when_to_use_TOMS_O3_columns|Bug fix for determining when to use TOMS O3 columns]]
| + | |
| − | ##[[Development_of_Fast-JX_in_GEOS-Chem#Reactivation_of_bromine_species_photolysis_for_tropospheric_simulation|Reactivation of Br species photolysis in Fast-JX for tropospheric chemistry simulation]]
| + | |
| − | ##[[Development_of_Fast-JX_in_GEOS-Chem#Error_in_reducing_wavelength_bins_for_tropospheric_simulation|Fixed wavelength bin interpolation error in Fast-JX for tropospheric-only simulation]]
| + | |
| − | #Fixes for the full-chemistry simulations and nested-grid simulations:
| + | |
| − | ##[[UCX_chemistry_mechanism#Modify_treatment_of_N2O5_.2B_H2O_reaction_in_calcrate.F|Modify treatment of N2O5+H2O reaction in calcrate.F]]
| + | |
| − | ##[[Setting_up_GEOS-Chem_nested_grid_simulations#Parallelization_error_in_nested_grid_simulations|Fixed parallelization error in nested grid simulations]]
| + | |
| − | ##[[Ship_emissions#Fix_for_high_values_of_O3_dry_deposition|Fix for high values of O3 dry deposition]]
| + | |
| − | ##[[New_isoprene_scheme#Remove_duplicate_GLYX_product_from_RIO2_reaction|Remove duplicate GLYX product from RIO2 reaction]]
| + | |
| − | ##[[Sea_salt_aerosols#Bug_in_ND44_drydep_diagnostic_for_sea_salt_aerosols|Bug fix in ND44 drydep diagnostic for sea salt aerosols]]
| + | |
| − | ##[[FAST-JX_v7.0_photolysis_mechanism#Final_recommendation_for_J.28HAC.29_and_J.28PAN.29|Implement final recommendation for J(HAC) and J(PAN)]]
| + | |
| − | ##[[FAST-JX_v7.0_photolysis_mechanism#Acetaldehyde_photolysis|Now use updated cross-sections for computing J(ALD2)]]
| + | |
| − | ##[[Nested_Model_Working_Group#Bug_fixes_for_the_0.25x0.3125_nested_CH_simulation|Resolved technical issues for 0.25° x 0.3125° CH nested simulation]]
| + | |
| − | ##[[GEOS-Chem_v10-01#Bug_fixes_and_and_updates_for_v10-01g|Bug fix for planeflight diagnostic when using chemistry timesteps < 15 min]]
| + | |
| − | ##[[Wet_deposition#Bug_fixes_for_scavenging_by_co-condensation|Bug fixes for wet scavenging by co-condensation]]
| + | |
| − | #Fixes for specialty simulations (including aerosol microphysics)
| + | |
| − | ##[[TOMAS_aerosol_microphysics#Reactivating_dust_tracers_in_TOMAS_simulations|Reactivating dust tracers in TOMAS simulations]]
| + | |
| − | ##[[TOMAS_aerosol_microphysics#Prevent_sea_salt_from_being_emitted_over_ice_in_TOMAS|Prevent sea salt from being emitted over ice in TOMAS]]
| + | |
| − | ##[[TOMAS_aerosol_microphysics#Fix_for_ND61_diagnostic|Fix for ND61 diagnostic in TOMAS simulations]]
| + | |
| − | ##[[Global_Terrestrial_Mercury_Model#Fixed_library_linking_issue_when_building_GTMM_into_GEOS-Chem|Fixed library linking issue when building GTMM into GEOS-Chem]]
| + | |
| − | ##[[CH4_simulation#Minor_fixes_to_CH4_simulation_for_MERRA_meteorology|Minor fixes to CH4 simulation for MERRA meteorology]]
| + | |
| − | ##[[POPs_simulation#Avoid_div-by-zero_errors_in_POPs_simulation|Avoid div-by-zero errors in POPs simulation]]
| + | |
| − | ##[[Tagged_CO_simulation#Bug_fixes_and_updates_for_tagged_CO_in_v9-02|Bug fixes and updates for tagged CO simulation in v9-02]]
| + | |
| − | ##[[Mercury#Bug_in_tagged_Hg_emissions_in_v9-02|Fixed bug in tagged Hg emissions]]
| + | |
| − | #Fixes for the [[HEMCO|HEMCO emissions component]]
| + | |
| − | ##[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_for_segmentation_fault_when_emissions_are_turned_off|Prevent segmentation fault errors in HEMCO when emissions are turned off]]
| + | |
| − | ##[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v10-01f|Add new functionality into HEMCO]]
| + | |
| − | #Fixes to remove computational bottlenecks:
| + | |
| − | ##[[Cloud convection#Removed array temporaries in call to FVDAS_CONVECT|Removed array temporaries in the call to the GEOS-4 convection routine]]
| + | |
| − | ##[[GCAP#Removed_array_temporaries_in_call_to_GCAP_CONVECT|Removed array temporaries in the call to the GCAP convection routine]]
| + | |
| − | ##[[Mercury#Remove_array_temporaries_in_routine_READ_HG2_PARTITIONING|Removed array temporaries in subroutine <tt>READ_HG2_PARTITIONING</tt>]]
| + | |
| − | ##[[Advection_scheme_TPCORE#Reduce_time_spent_in_routine_TPCORE_FVDAS|Reduce time spent in advection driver routine TPCORE_FVDAS]]
| + | |
| − | #Other miscellaneous fixes:
| + | |
| − | ##[[GEOS-Chem_v9-02#Incorrect_value_of_molecular_weight_for_the_PROPNN_tracer_in_input.geos|Now use correct value of molecular weight for PROPNN tracer]]
| + | |
| − | ##[[Installing_libraries_for_GEOS-Chem#How_GEOS-Chem_uses_nc-config_and_nf-config|Make the netCDF library linking process more portable]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 18:38, 14 January 2015 (EST) | + | {| border=1 cellspacing=0 cellpadding=5 |
| | + | |-bgcolor="#CCCCCC" |
| | + | !Version |
| | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| − | == Issues resolved in GEOS-Chem v9-02 == | + | |-valign="top" |
| | + | |[[GEOS-Chem_model_development_priorities#13.3.0|13.3.0]] |
| | + | |TBD |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/19 '''Milestone 13.3.0'''] |
| | | | |
| − | #Fixes for emissions modules:
| + | |-valign="top" |
| − | ##[[GEOS-Chem_v9-02#Bug_fix_for_updated_CAC_emissions|Bug fix for updated CAC emissions]]
| + | |[[GEOS-Chem_model_development_priorities#13.2.0|13.2.0]] |
| − | ##[[GEOS-Chem_v9-02#Bug_fix_for_Br2_emissions|Bug fix for Br2 emissions]]
| + | |TBD |
| − | ##[[GEOS-Chem_v9-02#Bug_in_regridding_of_anthropogenic_emissions|Bug fix in regridding of anthro emissions]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | ##[[GEOS-Chem_v9-02#Bug_in_MEGAN_emissions_when_running_with_MERRA_or_GEOS-FP|Bug in MEGAN emissions when using MERRA or GEOS-FP]]
| + | |[https://github.com/geoschem/geos-chem/milestone/18 '''Milestone 13.2.0'''] |
| − | ##[[GEOS-Chem_v9-02#Bug_fix_in_nei2005_anthro_mod.F|Bug fix in nei2005_anthro_mod.F]]
| + | |
| − | ##[[David_Streets_regional_emissions_for_China_and_SE_Asia#Bug_in_EMIS_STREETS_ANTHRO_05x0666|Bug fix in EMIS_STREETS_ANTHRO_05x0666]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Bug_fixes_in_biofuel_mod.F_and_emfossil.F|Bug fixes in biofuel_mod.F and emfossil.F]]
| + | |
| − | ##[[Biomass_burning_emissions#Bug_fix_for_3-hourly_GFED3_emissions|Bug fix for 3-hourly GFED3 emissions]]
| + | |
| − | ##[[Volcanic_SO2_emissions_from_Aerocom#Typo_in_VOLCPRESS_definition|Fixed typo in Aerocom volcanic SO2 emissions routine]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Bug_fixes_in_day-of-week_computation|Bug fixes in day-of-week computation]]
| + | |
| − | ##[[Anthropogenic_emissions#Prevent_negative_emissions_over_Canada|Prevent negative emissions over Canada]]
| + | |
| − | ##[[TOMAS_aerosol_microphysics#Minor_bug_in_TOMAS_sulfate_emissions|Minor bug fix in TOMAS sulfate emissions]]
| + | |
| − | ##[[EPA/NEI05 North American emissions#Bug fix for NEI2005 SO4 emissions in sulfate_mod.F|Bug fix for NEI2005 SO4 emissions in sulfate_mod.F]]
| + | |
| − | ##[[Soil_NOx_emissions#Prevent LOG(0) error from occurring in soil NOx module|Prevent LOG(0) error from occurring in soil NOx module]]
| + | |
| − | ##[[Historical_and_Future_Emissions#Bug_fix_for_BC.2FOC_biofuels_when_using_RCP_scenarios|Bug fix for biofuels when using RCP scenarios]]
| + | |
| − | #Fixes for dry deposition and wet deposition modules:
| + | |
| − | ##[[Acetone#DRYACET_is_missing_from_globchem.dat|Add missing DRYACET to globchem.dat mechanism file]]
| + | |
| − | ##[[Wet_deposition#Bug_in_Henry.27s_constant|Bug fix in Henry's law constant]]
| + | |
| − | ##[[Dry_deposition#Error_in_definition_of_RIP_and_IEPOX_drydep_species|Bug fix in definition of RIP, IEPOX drydep species]]
| + | |
| − | ##[[Ship_emissions#Only_call_PARANOX_with_the_full-chemistry_simulations|Bug fix: Do not call PARANOX plume model for offline simulations]]
| + | |
| − | ##[[Dry_deposition#Parallelization_error_in_routine_METERO|Fix for parallelization bug in subroutine METERO (in drydep module)]]
| + | |
| − | ##[[Dry_deposition#Parallelization_error_in_routine_DRYFLX|Fixed parallelization error in routine DRYFLX (in dry deposition module)]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Prevent_bad_drydep_flux_values_from_being_passed_to_the_soil_NOx_emissions_module|Prevent bad drydep flux values from being passed to the soil NOx module]]
| + | |
| − | ##[[Sea_salt_aerosols#Minor_bug_in_AD44_diagnostic_in_routine_DRY_DEPOSITION|Fixed minor bug in AD44 diagnostic in routine DRY DEPOSITION (sea salt aerosols)]]
| + | |
| − | #Fixes for met fields:
| + | |
| − | ##[[GEOS-Chem_v9-02#Correction_for_GEOS-5_PBL_heights|Correction for GEOS-5 PBL heights]]
| + | |
| − | ##[[GEOS-5 issues#Reset NaNs in MOISTQ to zero|Reset NaNs in MOISTQ to zero]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Convert_MERRA_and_GEOS-FP_relative_humidity_fields_to_percent_after_reading_from_disk|Convert MERRA and GEOS-FP relative humidity fields to percent after reading from disk]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Bug_fix_for_declaration_of_GEOS-FP_PFICU.2C_PFLCU.2C_PFILSAN.2C_PFLLSAN_fields|Bug fix for declaration of certain GEOS-FP met fields]]
| + | |
| − | #Fixes for computational efficiency:
| + | |
| − | ##[[Passing_array_arguments_efficiently_in_GEOS-Chem|Eliminate inefficient subroutine calls]]
| + | |
| − | ##[[Numerical issues discovered in GEOS-Chem|Corrected several floating-point errors]]
| + | |
| − | ##Eliminate array temporaries in [[Passing_array_arguments_efficiently_in_GEOS-Chem#pjc_pfix_mod.F|pjc_pfix_mod.F]] and [[Passing_array_arguments_efficiently_in_GEOS-Chem#pressure_mod.F|pressure_mod.F]]
| + | |
| − | ##[[Passing_array_arguments_efficiently_in_GEOS-Chem#gcap_convect_mod.F|Eliminate array temporaries in GCAP convection module]]
| + | |
| − | #Fixes for diagnostics:
| + | |
| − | ##[[GEOS-Chem_v9-01-03#Bug_fix_in_hdf_mod.F|Bug fix in hdf_mod.F]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Bug_fixes_in_diag48_mod.F|Bug fixes in diag48_mod.F]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Bug_in_ND36_diagnostic_when_ship_emissions_are_turned_off|Bug fix in ND36 diagnostic when ship emissions are turned off]]
| + | |
| − | #Fixes for specialty and microphysics simulations:
| + | |
| − | ##[[GEOS-Chem_v9-02#Bug_fixes_for_tagged_CO_simulation|Bug fixes for tagged CO simulation]]
| + | |
| − | ##[[Mercury#Bug_fixes_for_nested_Hg_simulation|Bug fixes for nested Hg simulation]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Bug_fix_for_reading_OH_file_in_offline_simulations|Bug fix for reading OH file in offline simulations]]
| + | |
| − | ##[[Aerosol-only_simulation#Emissions_not_included_when_using_non-local_PBL_mixing_scheme|Now include emissions in the aerosol-only simulation when using non-local PBL mixing]]
| + | |
| − | ##[[Aerosol-only_simulation#Error_in_ISOROPIAII_when_sulfate_aerosols_are_turned_off|Avoid error in ISOROPIAII when using offline aerosol simulation]]
| + | |
| − | ##[[Tagged_Ox_simulation#Modifications_for_v9-02_tagged_O3_simulation|Modifications for v9-02 tagged O3 simulation]]
| + | |
| − | ##[[CH4_simulation#Fixes_for_wetland_emissions|Fixes for wetland emissions in CH4 simulation]]
| + | |
| − | ##[[Tagged_Ox_simulation#Reactivate_stratospheric_P.28Ox.29_in_tagged_Ox_simulation|Reactivate stratospheric P(Ox) in tagged Ox simulation]]
| + | |
| − | ##[[Tagged_Ox_simulation#Replace_LD65_with_LLTROP_in_tagged_ox_mod.F|Replace LD65 with LLTROP in tagged_ox_mod.F]]
| + | |
| − | ##[[TOMAS_aerosol_microphysics#Updates_for_GEOS-Chem_v9-02_public_release|Several fixes for TOMAS aerosol microphysics]]
| + | |
| − | ##[[POPs_simulation#Prevent_error_when_reading_global_OC|Prevent error in POPs simulation when reading global OC]]
| + | |
| − | #Fixes for the photolysis mechanism:
| + | |
| − | ##[[FAST-J photolysis mechanism#Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data|Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data]]
| + | |
| − | ##[[Aerosol_optical_properties#Fix_to_jv_spec_aod.dat|Add fix to jv_spec_aod.dat file]]
| + | |
| − | ##[[FAST-J photolysis mechanism#v9-02 post-release patch to fix bug in acetone photolysis pressure dependency|Post-release patch to fix bug in acetone photolysis pressure dependency]]
| + | |
| − | #Other fixes:
| + | |
| − | ##[[GEOS-Chem_v9-02#Additional_bug_fixes_for_MAP_A2A_regridding_algorithm|Additional bug fixes for MAP_A2A regridding]]
| + | |
| − | ##[[Regridding_in_GEOS-Chem#Bug_in_grid_mod.F90|Bug fix in grid_mod.F90]]
| + | |
| − | ##[[GCAP#Fixed_bugs_caused_by_GIGC_edits|Fixed typos in GCAP code]]
| + | |
| − | ##[[Linoz stratospheric ozone chemistry#Reactivate parallel DO loop in LINOZ_CHEMO3|Reactivate parallel DO loop in LINOZ_CHEMO3 routine]]
| + | |
| − | ##[[Boundary_layer_mixing#Corrected_unit_conversion_bug_in_calls_to_SET_CH3Br.2C_SET_BrO_for_TURBDAY_PBL_mixing|Corrected unit conversion bug when TURBDAY PBL mixing is used]]
| + | |
| − | ##[[GEOS-Chem_v9-02#Fixes_for_minor_technical_issues|Fixes for minor technical issues]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 14:11, 20 May 2014 (EDT) | + | |-valign="top" |
| | + | |[[GEOS-Chem 13.1.0|13.1.0]] |
| | + | |TBD |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/17 '''Milestone 13.1.0'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v9-01-03 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 13.0.2|13.0.2]] |
| | + | |12 Apr 2021 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/21?closed=1 '''Milestone 13.0.2'''] |
| | | | |
| − | #[[GEOS-Chem_v9-01-03#Bug_fix_for_GLCO3_and_GLPAN_in_standard_mechanism|Bug fix for GLCO3 and GLPAN in standard mechanism]]
| + | |-valign="top" |
| − | #[[GEOS-Chem_v9-01-03#Structural_changes_to_clarify_science_behind_washout|Structural changes to clarify science behind washout]]
| + | |[[GEOS-Chem 13.0.1|13.0.1]] |
| − | #[[GEOS-Chem_v9-01-03#Correct_out-of-bounds_error_in_offline_aerosol_simulation|Correct out-of-bounds error in offline aerosol simulation]]
| + | |23 Mar 2021 |
| − | #[[GEOS-Chem_v9-01-03#Bug_fix_for_mass_transport_flux_diagnostics|Bug fix for mass transport flux diagnostics]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem_v9-01-03#Bug_fix_in_ND67_sea_level_pressure_diagnostic|Bug fix in ND67 sea level pressure diagnostic]]
| + | |[https://github.com/geoschem/geos-chem/milestone/20?closed=1 '''Milestone 13.0.1'''] |
| − | #[[GEOS-Chem_v9-01-03#Bug_fixes_for_nested-grid_simulation|Bug fixes for nested-grid simulation]]
| + | |
| − | #[[GEOS-Chem_v9-01-03#Bug_fix_in_streets_anthro_mod.F_for_offline_simulations|Bug fix in streets_anthro_mod.F for offline simulations]]
| + | |
| − | #[[GEOS-Chem_v9-01-03#Bug_fixes_for_dicarbonyls_simulation|Bug fixes for dicarbonyls simulation]]
| + | |
| − | #[[GEOS-Chem_v9-01-03#Bug_fixes_for_regional_emission_masks|Bug fixes for regional emission masks]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 10:19, 13 November 2012 (EST) | + | |-valign="top" |
| | + | |width="80px"|[[GEOS-Chem 13.0.0|13.0.0]] |
| | + | |width="100px"|18 Mar 2021 |
| | + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/8?closed=1 '''Milestone 13.0.0'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v9-01-02 ==
| + | |} |
| | | | |
| − | #[[GEOS-Chem v9-01-02#Mis-indexing error in partition.f|Corrected mis-indexing error in partition.f caused by the dynamic tropopause]]
| + | === GEOS-Chem 12 === |
| − | #[[GEOS-Chem v9-01-02#Out-of-bounds error in readchem.f|Corrected out-of-bounds error in readchem.f]]
| + | |
| − | #[[Restart files#Potential issue with reading restart.cspec file|Fix for mis-indexing issue in CSPEC restart file]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Various bug fixes for the offline Hg simulation|Various bug fixes for the offline Hg simulation]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Bug fix for leap years with GCAP|Bug fixes for leap years when using GCAP met fields]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Minor bug fixes for emissions routines affecting offline simulations|Minor bug fixes for emissions routines affecting offline simulations]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Fixes for minor issues affecting nested-grid simulations|Minor bug fixes for emissions routines affecting offline simulations]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Bug fixes for compatibility with the PGI compiler|Fixes for better compatibility with the PGI compiler]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Washout fix for non-aerosol species|Washout fix for non-aerosol species]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Fix for GEIA emissions scaling factor over Botswana|Fix for GEIA emissions scaling factor over Botswana]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Fixed minor issues in MERRA cloud convection routine|Fixed minor issues in MERRA cloud convection routine]]
| + | |
| − | #[[GEOS-Chem_v9-01-02#Fix for vertical regridding of offline OH for offline simulations|Fix for vertical regridding of offline OH for offline simulations]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Further bug fixes for the offline Hg simulation|Further bug fixes for the offline Hg simulation]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Further fixes for nested-grid simulations|Further fixes for nested-grid simulations]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Fix for partitioning chemical species|Fix for partitioning chemical species]]
| + | |
| − | #[[GEOS-Chem v9-01-02#Bug fixes for biofuel emissions|Bug fixes for biofuel emissions]]
| + | |
| − | #[[Ship emissions#Potential bug in EDGAR ship emissions code|Fix bug in EDGAR ship emissions code]]
| + | |
| − | #[[Ship emissions#Bug in ship NOx emissions|Bug fix for ship NOx emissions]]
| + | |
| − | #[[GEOS-Chem_v9-01-02#Prevent_out-of-bounds_errors_in_ND01_and_ND02_diagnostics_for_Rn-Pb-Be_simulation|Prevent out-of-bounds errors in ND01 and ND02 diagnostics (Rn-Pb-Be simulation)]]
| + | |
| − | #[[GEOS-Chem_v9-01-02#Do_not_use_erroneous_MEGAN_AEF_data_for_nested-grid_simulations|Do not use erroneous MEGAN AEF data for nested-grid simulations]]
| + | |
| | | | |
| − | --[[User:Melissa Payer|Melissa Payer]] 12:08, 21 November 2011 (EST)<br>
| + | {| border=1 cellspacing=0 cellpadding=5 |
| − | --[[User:Bmy|Bob Y.]] 12:05, 28 November 2011 (EST) | + | |-bgcolor="#CCCCCC" |
| | + | !Version |
| | + | !Released |
| | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
| | | | |
| − | == Issues resolved in GEOS-Chem v9-01-01 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.9.3|12.9.3]] |
| | + | |06 Aug 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/16?closed=1 '''Milestone 12.9.3'''] |
| | | | |
| − | #[[GEOS-Chem v9-01-01#Patches from v8-03-02|Standardization of patches from v8-03-02]]
| + | |-valign="top" |
| − | #[[GEOS-Chem v9-01-01#Bug fix for biofuels in EPA.2FNEI05|Bug fix for biofuels in EPA/NEI05]]
| + | |[[GEOS-Chem 12#12.9.2|12.9.2]] |
| − | #[[GEOS-Chem v9-01-01#Important bug fixes for ship emissions|Important bug fixes for ship emissions]]
| + | |24 Jul 2020 |
| − | #[[GEOS-Chem v9-01-01#Duplicate diagnostics|Duplicate diagnostics]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem v9-01-01#Starting runs at times other than 00 GMT|Starting runs at times other than 00 GMT]]
| + | |[https://github.com/geoschem/geos-chem/milestone/15?closed=1 '''Milestone 12.9.2'''] |
| − | #[[GEOS-Chem v9-01-01#Fix ND15 for non-local PBL scheme|Fix ND15 for non-local PBL scheme]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Fix to prevent div-by-zero in sulfate mod.f|Fix to prevent div-by-zero in sulfate_mod.f]]
| + | |
| − | #[[GEOS-Chem v9-01-01#PEDGE-.24 in timeseries diagnostics|PEDGE-$ in timeseries diagnostics]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Running offline simulations on the GEOS-5 72L grid|Running offline simulations on the GEOS-5 72L grid]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Fixes to improve efficiency in vdiff mod.f90|Fixes to improve efficiency in vdiff_mod.f90]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Typos in megan mod.f|Typos in megan_mod.f]]
| + | |
| − | #[[GEOS-Chem v9-01-01#Typos in edgar mod.f|Typos in edgar_mod.f]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 11:25, 18 February 2011 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.9.1|12.9.1]] |
| | + | |17 Jul 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/14?closed=1 '''Milestone 12.9.1'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-03-02 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.9.0|12.9.0]] |
| | + | |17 Jul 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/10?closed=1 '''Milestone 12.9.0'''] |
| | | | |
| − | #[[GEOS-Chem v8-03-02#Fix for EPA/NEI 2005 emissions|Fix for EPA/NEI 2005 emissions]]
| + | |-valign="top" |
| − | #[[GEOS-Chem v8-03-02#Minor fixes in gamap_mod.f|Minor fixes in gamap_mod.f]]
| + | |[[GEOS-Chem 12#12.8.2|12.8.2]] |
| − | #[[GEOS-Chem v8-03-02#Bug fix for ND42 diagnostic and ISORROPIA II|Bug fix for ND42 diagnostic and ISORROPIA II]]
| + | |27 May 2020 |
| − | #[[GEOS-Chem v8-03-02#Minor fix for AOD calculation|Minor fix for AOD calculation]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem v8-03-02#Avoid using unallocated arrays in edgar_mod.f|Avoid using unallocated arrays in edgar_mod.f]]
| + | |[https://github.com/geoschem/geos-chem/milestone/13?closed=1 '''Milestone 12.8.2'''] |
| − | #[[GEOS-Chem v8-03-02#Transport fix for GEOS-5 nested grid simulations|Transport fix for GEOS-5 nested grid simulations]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:53, 7 September 2010 (EDT) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.8.1|12.8.1]] |
| | + | |21 May 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/12?closed=1 '''Milestone 12.8.1'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-03-01 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.8.0|12.8.0]] |
| | + | |04 Mar 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/7?closed=1 '''Milestone 12.8.0'''] |
| | | | |
| − | #[[GEOS-Chem v8-03-01#Patch to enable call to SOA PARA INIT|Patch to enable call to SOA PARA INIT]]
| + | |-valign="top" |
| − | #[[GEOS-Chem v8-03-01#Patch to fix declaration of IONIC in ISORROPIA_II|Patch to fix declaration of IONIC in ISORROPIA_II]]
| + | |[[GEOS-Chem 12#12.7.2|12.7.2]] |
| − | #[[GEOS-Chem v8-03-01#Patch to fix bug in Aromatic SOA|Patch to fix bug in Aromatic SOA]]
| + | |09 Mar 2020 |
| − | #[[GEOS-Chem v8-03-01#Patch to scale AOD diagnostic output to other wavelengths|Patch to scale AOD diagnostic output to other wavelengths]]
| + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem v8-03-01#Photolysis now computed at midpoint of chemistry timestep|Photolysis now computed at midpoint of chemistry timestep]]
| + | |[https://github.com/geoschem/geos-chem/milestone/11?closed=1 '''Milestone 12.7.2'''] |
| − | #[[GEOS-Chem v8-03-01#Bug fix in ISORROPIA for offline aerosol|Bug fix in ISORROPIA for offline aerosol]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Minor bug fix in SRCSO2|Minor bug fix in SRCSO2 ]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug in GET EMMONOT MEGAN|Bug in GET_EMMONOT_MEGAN]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug in READ_ANTHRO_NH3|Bug in READ_ANTHRO_NH3]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Fix for initialization of EMEP ship emissions|Fix for initialization of EMEP ship emissions]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug fix in AVGPOLE|Bug fix in AVGPOLE]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Bug fix in EMITHIGH (carbon_mod.f)|Bug fix in EMITHIGH (carbon_mod.f)]]
| + | |
| − | #[[GEOS-Chem v8-03-01#Fix to prevent numerical overflow in EXP function|Fix to prevent numerical overflow in EXP function]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 15:05, 30 June 2010 (EDT) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.7.1|12.7.1]] |
| | + | |19 Feb 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/9?closed=1 '''Milestone 12.7.1'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-04 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.7.0|12.7.0]] |
| | + | |03 Feb 2020 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/4?closed=1 '''Milestone 12.7.0'''] |
| | | | |
| − | #[[GEOS-Chem v8-02-04#Memory issue with KPP|Memory issue with KPP]]
| + | |-valign="top" |
| − | #[[GEOS-Chem v8-02-04#Updated reactions in sulfate_mod.f|Updated reactions in sulfate_mod.f]]
| + | |[[GEOS-Chem 12#12.6.3|12.6.3]] |
| − | #[[GEOS-Chem v8-02-04#Bug fix for EMEP ship emissions|Bug fix for EMEP ship emissions]]
| + | |25 Nov 2019 |
| − | #[[GEOS-Chem v8-02-04#Minor fix for molecular weights in drydep_mod.f|Minor fix for molecular weights in drydep_mod.f]]
| + | |[https://github.com/geoschem/gchp geoschem/gchp] |
| − | #[[GEOS-Chem v8-02-04#Bug fix in biomass_mod.f|Bug fix in biomass_mod.f]]
| + | |[https://github.com/geoschem/gchp/milestone/2?closed=1 '''Milestone 12.6.3'''] |
| − | #[[GEOS-Chem v8-02-04#Minor bug fix in gamap_mod.f|Minor bug fix in gamap_mod.f]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Fixes and updates in seasalt_mod.f|Fixes and updates in seasalt_mod.f]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Bug fix in emfossil.f for 0.5 x 0.666 nested grid tagged-CO option|Bug fix in emfossil.f for 0.5 x 0.666 nested grid tagged-CO option]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Bug fix in DIAG20 (diag_pl_mod.f)|Bug fix in DIAG20 (diag_pl_mod.f)]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Div-by-zero error encountered in arsl1k.f|Div-by-zero error encountered in arsl1k.f]]
| + | |
| − | #[[GEOS-Chem v8-02-04#Fix for diagnostic arrays in TPCORE|Fix for diagnostic arrays in TPCORE]]
| + | |
| − | #[[GEOS-Chem v8-02-04#MEGAN now uses MODIS LAI by default|MEGAN now uses MODIS LAI by default]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:29, 23 February 2010 (EST) | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.6.2|12.6.2]] |
| | + | |15 Nov 2019 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/6?closed=1 '''Milestone 12.6.2'''] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-03 == | + | |-valign="top" |
| | + | |[[GEOS-Chem 12#12.6.1|12.6.1]] |
| | + | |28 Oct 2019 |
| | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| | + | |[https://github.com/geoschem/geos-chem/milestone/5?closed=1 '''Milestone 12.6.1'''] |
| | | | |
| − | #[[GEOS-Chem v8-02-03#Patch for KPP for v8-02-03|Patch for KPP solver for v8-02-03]]
| + | |-valign="top" |
| − | #[[GEOS-Chem_v8-02-03#Corrected Bond et al BC.2FOC_emissions|Corrected Bond et al BC/OC emissions]]
| + | |width="80px"|[[GEOS-Chem 12#12.6.0|12.6.0]] |
| − | #[[GEOS-Chem_v8-02-03#Several_bug_fixes_in_sulfate_mod.f|Several bug fixes in sulfate_mod.f]]
| + | |width="100px"|18 Oct 2019 |
| − | #[[GEOS-Chem_v8-02-03#Missing_NOx_data_in_S.E.-Asia|Missing NOx data in S.E.-Asia]]
| + | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] |
| − | #[[GEOS-Chem_v8-02-03#Mis-calculation_of_Courant_numbers_in_tpcore_fvdas_mod.f90|Mis-calculation of Courant numbers in tpcore_fvdas_mod.f90]]
| + | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/2?closed=1 '''Milestone 12.6.0'''] |
| − | #[[GEOS-Chem_v8-02-03#Format_problem_in_planeflight_mod.f|Format problem in planeflight_mod.f]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:55, 4 February 2010 (EST)
| + | |} |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-02 == | + | == Bugs and fixes in older GEOS-Chem versions == |
| | | | |
| − | #[[GEOS-Chem_v8-02-02#EPA.2FNEI_inventory:_reset_other_species_to_zero|EPA/NEI inventory: reset other species to zero]]
| + | For a complete list of bugs and fixes in older GEOS-Chem versions, please see: |
| − | #[[GEOS-Chem_v8-02-02#Scale_factor_for_oceanic_acetone_for_GEOS5_2x2.5|Scale factor for oceanic acetone for GEOS5 2x2.5]] was fixed in GEOS-Chem v8-02-02.
| + | |
| − | #[[GEOS-Chem_v8-02-02#Bug_with_PRIVATE_declaration_in_sulfate_mod.f|Bug with PRIVATE declaration in sulfate_mod.f]]
| + | |
| − | #[[GEOS-Chem_v8-02-02#Bug_with_online_2ndary_aerosol|Bug with online 2ndary aerosol]]
| + | |
| − | #[[GEOS-Chem v8-02-02#Typo in HO2 uptake|Typo in HO2 uptake]]
| + | |
| | | | |
| − | --[[User:Bmy|Bob Y.]] 16:40, 11 January 2010 (EST)
| + | *[[Bugs and fixes in GEOS-Chem 12.0.0 to 12.5.0]] |
| | + | *[[Bugs and fixes in GEOS-Chem v9, v10, and v11]] |
| | + | *[[Bugs and fixes in GEOS-Chem v7 and v8]] |
| | | | |
| − | == Issues resolved in GEOS-Chem v8-02-01 ==
| + | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 14:23, 22 March 2021 (UTC) |
| − | | + | |
| − | #[[GEOS-Chem_v8-02-01#Output selected tracers only for dry and wet deposition, convection and rain diagnotics|Output selected tracers only for dry and wet deposition, convection and rain diagnotics]]
| + | |
| − | #[[GEOS-Chem_v8-02-01#On-the-fly regridding for 0.5x0.667 nested grids|On-the-fly regridding for 0.5x0.667 nested grids]]
| + | |
| − | #[[GEOS-Chem_v8-02-01#Bug with EMEP ship emissions for nested grids|Bug with EMEP ship emissions for nested grids]]
| + | |
| − | #[[GEOS-Chem_v8-02-01#Bug in sulfate_mod.f to turn off biomass emissions|Bug in sulfate_mod.f to turn off biomass emissions]]
| + | |
| − | #[[GEOS-Chem_v8-02-01#Minor error in gamap_mod.f|Minor error in gamap_mod.f]]
| + | |
| − | #[[GEOS-Chem_v8-02-01#Bug fix for Streets emissions on 0.5x0.666 nested grid|Bug fix for Streets emissions on 0.5x0.666 nested grid]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 09:55, 12 January 2010 (EST) | + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v8-01-04 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem_v8-01-04#Seg fault in GEOS-5 China nested grid simulation|Seg fault in GEOS-5 China nested grid simulation]]
| + | |
| − | #[[GEOS-Chem_v8-01-04#Error message in partition.f|Error message in partition.f]]
| + | |
| − | #[[GEOS-Chem_v8-01-04#Erroneous O3 diagnostic (ND45)|Erroneous O3 diagnostic (ND45)]]
| + | |
| − | #[[GEOS-Chem_v8-01-04#Post-Release Patches|Post-Release Patches]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 09:58, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v8-01-03 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem_v8-01-03#TPCORE replaced with version based on GMI model|TPCORE replaced with version based on GMI model]]
| + | |
| − | #[[GEOS-Chem_v8-01-03#Output of ND51 does not match output in the ctm.bpch file|Output of ND51 does not match output in the ctm.bpch file]]
| + | |
| − | #[[GEOS-Chem_v8-01-03#ND22 (J-value) diagnostic|ND22 (J-value) diagnostic]]
| + | |
| − | #[[GEOS-Chem_v8-01-03#ND34 (biofuel emissions) diagnostic|ND34 (biofuel emissions) diagnostic]]
| + | |
| − | #[[GEOS-Chem v8-01-03#Change of location of calls to diagnostics in main.f|Change of location of calls to diagnostics in main.f]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:29, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v8-01-02 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem v8-01-02#Quick fix for GEOS-5 optical depth|Quick fix for GEOS-5 optical depth]]
| + | |
| − | #*Please see the discussion [[GEOS-5_issues#GEOS-5 update and clarification|about this quick fix for the GEOS-5 optical depths]].
| + | |
| − | #*'''''NOTE: if you are using [[GEOS-Chem v8-01-04]] or higher with the [[GEOS-5_issues#Solution|reprocessed GEOS-5 met fields]], then you do not need to use this quick fix.'''''
| + | |
| − | #[[GEOS-Chem v8-01-02#Corrected labeling of SOA quantities in carbon_mod.f|Corrected labeling of SOA quantities in carbon_mod.f]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Double-substitution error in GET_ALK|Double-substitution error in GET_ALK]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Robustness fix for reading anthropogenic SO2 and NH3|Robustness fix for reading anthropogenic SO2 and NH3]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Minor bug in gasconc.f & calcrate.f|Minor bug in gasconc.f & calcrate.f]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Minor bug in emfossil.f|Minor bug in emfossil.f]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Fix for mass balance of HNO3 and NIT|Fix for mass balance of HNO3 and NIT]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Bug in ND43|Bug in ND43]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Problem w/ ND65 diagnostic and dynamic tropopause|Problem w/ ND65 diagnostic and dynamic tropopause]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Albedo diagnostic in GEOS-4|Albedo diagnostic in GEOS-4]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Pressure diagnostic : PS-PTOP vs. PEDGE|Pressure diagnostic : PS-PTOP vs. PEDGE]]
| + | |
| − | #[[GEOS-Chem v8-01-02#Minor bug in log file output|Minor bug in log file output]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:29, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v8-01-01 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem v8-01-01#Post-release patches|Post-release patches]]
| + | |
| − | #[[GEOS-Chem v8-01-01#Fixes for offline simulations|Fixes for offline simulations]]
| + | |
| − | #[[GEOS-Chem v8-01-01#Bugs in ND47/ND65/ND45 in v8-01-01|Bugs in ND47/ND65/ND45 in v8-01-01]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:35, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v7-04-13 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem v7-04-13#regrid_1x1_mod.f|Error in regrid_1x1_mod.f]]
| + | |
| − | #[[GEOS-Chem v7-04-13#smvgear.f|Error in smvgear.f]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:49, 12 January 2010 (EST)
| + | |
| − | | + | |
| − | == Issues resolved in GEOS-Chem v7-04-10 ==
| + | |
| − | | + | |
| − | #[[GEOS-Chem v7-04-10#NaN's in smvgear.f|NaN's in smvgear.f]]
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Y.]] 10:53, 12 January 2010 (EST)
| + | |
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there.
