Difference between revisions of "Benchmark/GEOS-Chem 12.4.0"
From Geos-chem
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|[[Volcanic_SO2_emissions#OMI-based_volcanic_emissions|Updated volcano emissions (1978-2019)]] | |[[Volcanic_SO2_emissions#OMI-based_volcanic_emissions|Updated volcano emissions (1978-2019)]] | ||
|Christoph Keller (NASA/GMAO) | |Christoph Keller (NASA/GMAO) | ||
+ | |||
+ | |- | ||
+ | |[[FAST-JX_v7.0_photolysis_mechanism#Further_fix_added_in_12.4.0|Bug fix: Rebuild chemical mechanisms for FAST-JX fix added in 12.3.2]] | ||
+ | |Katie Travis (NASA) | ||
|- | |- | ||
!colspan="2" bgcolor="#CCFFFF"|Features affecting the full-chemistry simulation: | !colspan="2" bgcolor="#CCFFFF"|Features affecting the full-chemistry simulation: | ||
+ | |||
+ | |||
+ | |-valign="top" | ||
+ | |[[FlexGrid|FlexGrid Stage 2: Add capability to define custom grids]] | ||
+ | |Melissa Sulprizio ([[GCST]])<br>Jiawei Zhuang (Harvard) | ||
|-valign="top" | |-valign="top" | ||
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|-valign="top" | |-valign="top" | ||
|1-month benchmark finished on: | |1-month benchmark finished on: | ||
− | | | + | |Fri May 24 06:51:03 EDT 2019 |
|-valign="top" | |-valign="top" | ||
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*Compiled with ifort 17.0.4 | *Compiled with ifort 17.0.4 | ||
*Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz) | *Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz) | ||
− | *Wall time: | + | *Wall time: 10:50:46 |
− | *[[Scalability|CPU time / wall time]]: | + | *[[Scalability|CPU time / wall time]]: 19.3517 |
− | *% of ideal performance: | + | *% of ideal performance: 80.63% |
− | *Memory: | + | *Memory: 13.8346 GB |
|-valign="top" | |-valign="top" | ||
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|-valign="top" | |-valign="top" | ||
|[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | |[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | ||
− | |<tt>http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.4.0/output/GC_12.4. | + | |<tt>http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.4.0/output/GC_12.4.0_May21.results.html</tt> |
|-valign="top" bgcolor="#cccccc" | |-valign="top" bgcolor="#cccccc" | ||
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|-valign="top" | |-valign="top" | ||
|Global mean OH from log file (% change): | |Global mean OH from log file (% change): | ||
− | |12. | + | |12.6452510681687 x 10<sup>5</sup> molec/cm<sup>3</sup> (0.91%) |
|-valign="top" | |-valign="top" | ||
|Methyl chloroform lifetime (% change): | |Methyl chloroform lifetime (% change): | ||
− | |4. | + | |4.8037 years (-2.92%) |
|-valign="top" | |-valign="top" | ||
|Methane lifetime (% change): | |Methane lifetime (% change): | ||
− | |8. | + | |8.0807 years (-3.09%) |
|-valign="top" | |-valign="top" | ||
|At the SURFACE, list all species that changed by 10% or more: | |At the SURFACE, list all species that changed by 10% or more: | ||
− | | | + | |NO, O3, PAN, ISOP, HNO3, H2O2, ACET, ALD2, MVK, MACR, NPMN, PPN, R4N2, PRPE, CH2O, N2O5, HNO4, DMS, SO2, SO4, SO4s, NH3, NH4, NIT, NITs, DST1, DST2, DST3, DST4, SALA, SALC, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, NO2, NO3, HNO2, XYLE, LIMO, TSOG1, TSOA1, ISOG1, ISOG2, ISOG3, ISOA1, ISOA3, ASOG1, ASOG2, ASOG3, ASOAN, ASOA1, ASOA2, ASOA3, SOAP, EOH, MGLY, GLYX, HPALD, DHDN, ETHLN, HCOOH, IEPOXA, IEPOXB, IEPOXD, ISN1, RIPA, RIPB, RIPD, IMAE, SOAIE, SOAME, SOAGX, SOAMG, LVOC, LVOCOA, ISN1OG, ISN1OA, MONITS, MONITU, HONIT, IONITA, MONITA, INDIOL, IPMN, HC187, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClNO2, ClOO, OClO, Cl2, Cl2O2, BrSALA, BrSALC, HOI, I2, IBr, ICl, I, IO, OIO, INO, IONO, IONO2, I2O2, I2O3, I2O4, ISALA, ISALC, OH, HO2 |
|-valign="top" | |-valign="top" | ||
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|-valign="top" | |-valign="top" | ||
|At 500 hPa, list all species that changed by 10% or more: | |At 500 hPa, list all species that changed by 10% or more: | ||
− | | | + | |NO, O3, ALK4, ISOP, HNO3, H2O2, RCHO, MVK, MACR, NPMN, R4N2, PRPE, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NIT, NITs, DST1, DST2, DST3, DST4, SALA, SALC, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, NO2, NO3, HNO2, TOLU, XYLE, LIMO, TSOG0, ASOG1, ASOG2, ASOG3, ASOA1, ASOA3, SOAP, GLYX, HPALD, DHDN, ETHLN, IEPOXA, IEPOXB, IEPOXD, ISN1, RIPA, RIPB, RIPD, IMAE, SOAME, LVOC, ISN1OG, ISN1OA, MONITS, HONIT, IONITA, IPMN, HC187, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClNO2, ClOO, OClO, Cl2, Cl2O2, BrSALA, BrSALC, CH2I2, CH2ICl, CH2IBr, HOI, I2, IBr, ICl, I, IO, HI, OIO, INO, IONO, IONO2, I2O2, I2O3, I2O4, ISALA, ISALC, OH, HO2 |
|-valign="top" | |-valign="top" | ||
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|-valign="top" | |-valign="top" | ||
|In the ZONAL MEAN differences, list all species that changed by 10% or more: | |In the ZONAL MEAN differences, list all species that changed by 10% or more: | ||
− | | | + | |NO, O3, PAN, ALK4, ISOP, HNO3, H2O2, ACET, MEK, ALD2, RCHO, MVK, MACR, NPMN, PPN, R4N2, PRPE, C3H8, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NH4, NIT, NITs, DST1, DST2, DST3, DST4, SALA, SALC, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, MAP, NO2, NO3, HNO2, BENZ, TOLU, XYLE, MTPA, LIMO, TSOG1, TSOA1, ISOG1, ISOG2, ISOG3, ISOA1, ISOA3, ASOG1, ASOG2, ASOG3, ASOAN, ASOA1, ASOA2, ASOA3, SOAP, EOH, MGLY, GLYX, ACTA, HPALD, DHDN, ETHLN, HCOOH, IEPOXA, IEPOXB, IEPOXD, ISN1, RIPA, RIPB, RIPD, IMAE, SOAIE, SOAME, SOAGX, SOAMG, LVOC, LVOCOA, ISN1OG, ISN1OA, MONITS, MONITU, HONIT, IONITA, MONITA, INDIOL, IPMN, HC187, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClNO2, ClOO, OClO, Cl2, Cl2O2, BrSALA, BrSALC, CH3I, CH2I2, CH2ICl, CH2IBr, HOI, I2, IBr, ICl, I, IO, HI, OIO, INO, IONO, IONO2, I2O2, I2O3, I2O4, ISALA, ISALC, OH, HO2 |
|-valign="top" | |-valign="top" | ||
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|-valign="top" | |-valign="top" | ||
− | |In the | + | |In the EMISSIONS maps, list all species that changed by 10% or more: |
| | | | ||
+ | *Volcano SO2 | ||
+ | *Lightning NO | ||
+ | *Soil NO | ||
+ | *DST1, DST2, DST3, DST4 | ||
+ | *Sea Salt emissions (SALA, SALC) | ||
+ | *Biogenic emissions: ACET, ALD2, CO, EOH, ISOP, LIMO, PRPE, SOAP, SOAS | ||
|-valign="top" | |-valign="top" | ||
− | |Comments on | + | |Comments on EMISSIONS differences: |
| | | | ||
Revision as of 15:20, 28 May 2019
This page includes information about all benchmark simulations for GEOS-Chem 12.4.0.
1-month benchmark
Benchmark plots
These benchmarks were primarily made with GCPy. Some benchmark plots created by GAMAP still remain because they have not been recreated in GCPy yet.
Category1 | Plots | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Primary | sfc | 500hPa | full column | stratosphere | sfc | |
Aerosols | sfc | 500hPa | full column | stratosphere | sfc | AOD |
Bromine | sfc | 500hPa | full column | stratosphere | sfc | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | sfc | |
Nitrogen | sfc | 500hPa | full column | stratosphere | sfc | |
Primary Organics | sfc | 500hPa | full column | stratosphere | sfc | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | sfc | |
ROy | sfc | 500hPa | full column | stratosphere | -- | |
Sulfur | sfc | 500hPa | full column | stratosphere | sfc | |
Emissions by HEMCO category |
Total,
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
Emissions tables | ||||
Plots still created by GAMAP | ||||||
J-values | maps | differences | ratios | -- | -- | |
Budget | -- | -- | -- | -- | -- | Ox and CO budgets |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
NOTES:
- Category and lumped species definitions are simple to adjust. Updating them requires only editing the json files.
- All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
Benchmark assessment form
Description | |||||||||||||||||||||||||
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New features added into GEOS-Chem |
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Version, resolution, met fields used: | GEOS-FP (72L), 4x5, July 2016 | ||||||||||||||||||||||||
1-month benchmark finished on: | Fri May 24 06:51:03 EDT 2019 | ||||||||||||||||||||||||
Performance statistics: |
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Compared to previous benchmark: | 12.3.0 | ||||||||||||||||||||||||
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Emissions', Photolysis, Chemistry, Other (please specify): Lightning NOx Emissions, Dust Emissions, Biogenic Emissions, Sea Salt Emissions, Soil NOx Emissions, Volcano Emissions | ||||||||||||||||||||||||
Unit test results may be viewed at: | http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.4.0/output/GC_12.4.0_May21.results.html | ||||||||||||||||||||||||
Metrics | |||||||||||||||||||||||||
Global mean OH from log file (% change): | 12.6452510681687 x 105 molec/cm3 (0.91%) | ||||||||||||||||||||||||
Methyl chloroform lifetime (% change): | 4.8037 years (-2.92%) | ||||||||||||||||||||||||
Methane lifetime (% change): | 8.0807 years (-3.09%) | ||||||||||||||||||||||||
At the SURFACE, list all species that changed by 10% or more: | NO, O3, PAN, ISOP, HNO3, H2O2, ACET, ALD2, MVK, MACR, NPMN, PPN, R4N2, PRPE, CH2O, N2O5, HNO4, DMS, SO2, SO4, SO4s, NH3, NH4, NIT, NITs, DST1, DST2, DST3, DST4, SALA, SALC, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, NO2, NO3, HNO2, XYLE, LIMO, TSOG1, TSOA1, ISOG1, ISOG2, ISOG3, ISOA1, ISOA3, ASOG1, ASOG2, ASOG3, ASOAN, ASOA1, ASOA2, ASOA3, SOAP, EOH, MGLY, GLYX, HPALD, DHDN, ETHLN, HCOOH, IEPOXA, IEPOXB, IEPOXD, ISN1, RIPA, RIPB, RIPD, IMAE, SOAIE, SOAME, SOAGX, SOAMG, LVOC, LVOCOA, ISN1OG, ISN1OA, MONITS, MONITU, HONIT, IONITA, MONITA, INDIOL, IPMN, HC187, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClNO2, ClOO, OClO, Cl2, Cl2O2, BrSALA, BrSALC, HOI, I2, IBr, ICl, I, IO, OIO, INO, IONO, IONO2, I2O2, I2O3, I2O4, ISALA, ISALC, OH, HO2 | ||||||||||||||||||||||||
Comments on SURFACE differences: | Below we summarize the notable changes caused by specific updates.
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At 500 hPa, list all species that changed by 10% or more: | NO, O3, ALK4, ISOP, HNO3, H2O2, RCHO, MVK, MACR, NPMN, R4N2, PRPE, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NIT, NITs, DST1, DST2, DST3, DST4, SALA, SALC, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, NO2, NO3, HNO2, TOLU, XYLE, LIMO, TSOG0, ASOG1, ASOG2, ASOG3, ASOA1, ASOA3, SOAP, GLYX, HPALD, DHDN, ETHLN, IEPOXA, IEPOXB, IEPOXD, ISN1, RIPA, RIPB, RIPD, IMAE, SOAME, LVOC, ISN1OG, ISN1OA, MONITS, HONIT, IONITA, IPMN, HC187, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClNO2, ClOO, OClO, Cl2, Cl2O2, BrSALA, BrSALC, CH2I2, CH2ICl, CH2IBr, HOI, I2, IBr, ICl, I, IO, HI, OIO, INO, IONO, IONO2, I2O2, I2O3, I2O4, ISALA, ISALC, OH, HO2 | ||||||||||||||||||||||||
Comments on 500 hPa differences: |
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In the ZONAL MEAN differences, list all species that changed by 10% or more: | NO, O3, PAN, ALK4, ISOP, HNO3, H2O2, ACET, MEK, ALD2, RCHO, MVK, MACR, NPMN, PPN, R4N2, PRPE, C3H8, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NH4, NIT, NITs, DST1, DST2, DST3, DST4, SALA, SALC, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, MAP, NO2, NO3, HNO2, BENZ, TOLU, XYLE, MTPA, LIMO, TSOG1, TSOA1, ISOG1, ISOG2, ISOG3, ISOA1, ISOA3, ASOG1, ASOG2, ASOG3, ASOAN, ASOA1, ASOA2, ASOA3, SOAP, EOH, MGLY, GLYX, ACTA, HPALD, DHDN, ETHLN, HCOOH, IEPOXA, IEPOXB, IEPOXD, ISN1, RIPA, RIPB, RIPD, IMAE, SOAIE, SOAME, SOAGX, SOAMG, LVOC, LVOCOA, ISN1OG, ISN1OA, MONITS, MONITU, HONIT, IONITA, MONITA, INDIOL, IPMN, HC187, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClNO2, ClOO, OClO, Cl2, Cl2O2, BrSALA, BrSALC, CH3I, CH2I2, CH2ICl, CH2IBr, HOI, I2, IBr, ICl, I, IO, HI, OIO, INO, IONO, IONO2, I2O2, I2O3, I2O4, ISALA, ISALC, OH, HO2 | ||||||||||||||||||||||||
Comments on ZONAL MEAN differences: |
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In the EMISSIONS maps, list all species that changed by 10% or more: |
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Comments on EMISSIONS differences: | |||||||||||||||||||||||||
Additional or summary comments: | |||||||||||||||||||||||||
Approval | |||||||||||||||||||||||||
Requires further investigation: | |||||||||||||||||||||||||
Approved by: | |||||||||||||||||||||||||
Date of approval: |