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− | {|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5" | + | __NOTOC__ |
| + | {|border="1" width="925px" bordercolor="#000000" cellspacing="0" cellpadding="5" |
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− | |-valign="middle" height="80" bgcolor="#0099FF" align="center" | + | |-valign="middle" height="80" bgcolor="##4494cc;" align="center" |
| |<p><font color="#FFFFFF" size="+3">'''GEOS–Chem Wiki'''</font></p> | | |<p><font color="#FFFFFF" size="+3">'''GEOS–Chem Wiki'''</font></p> |
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| |} | | |} |
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− | {|border="0" width="1000px" bordercolor="#FFFFFF" cellspacing="0" cellpadding="5" | + | {|border="0" width="925px" bordercolor="#FFFFFF" cellspacing="0" cellpadding="5" |
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| |-valign="top" | | |-valign="top" |
| | | | | |
| + | |
| + | ---- |
| | | |
| <p align="center"><big>'''GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment<br>through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.'''</big></p> | | <p align="center"><big>'''GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment<br>through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.'''</big></p> |
| | | |
− | The [http://acmg.seas.harvard.edu/geos/ GEOS–Chem model] is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the [http://gmao.gsfc.nasa.gov/ NASA Global Modeling and Assimilation Office]. It is applied by [http://acmg.seas.harvard.edu/geos/geos_people.html research groups around the world] to a wide range of atmospheric composition problems, Central management and support of the model is provided by the [http://acmg.seas.harvard.edu/index.html Atmospheric Chemistry Modeling Group at Harvard University.] | + | The [http://geos-chem.org GEOS–Chem model] is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the [http://gmao.gsfc.nasa.gov/ NASA Global Modeling and Assimilation Office]. It is applied by [https://geoschem.github.io/geos-chem-people-projects-map/ research groups around the world] to a wide range of atmospheric composition problems. Central management and support of the model is provided by the [https://acmg.seas.harvard.edu/ Atmospheric Chemistry Modeling Group at Harvard University] and by the [https://sites.wustl.edu/acag/ Atmospheric Composition Analysis Group at Washington University]. |
| | | |
− | This wiki is meant to facilitate communication between GEOS-Chem users and developers. If this is '''your first time here''', check out [[Features of the GEOS-Chem public wiki|the features page]]. If you would like to contribute to the wiki, please register as a user by clicking ''create account'' at the top right corner of this page.
| + | |} |
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− | New information is continually being added to the wiki, so please check back here often, or even better, [[Features_of_the_GEOS-Chem_public_wiki#Let_the_GEOS-Chem_wiki_inform_you_of_recent_changes.21|subscribe to the recent changes' RSS feed]]: you will not miss a discussion!
| + | {|border="1" width="925px" bordercolor="#000000" cellspacing="0" cellpadding="5" |
| + | |
| + | |-valign="top" |
| + | |colspan="3" align="center" bgcolor="#CCCCCC"|'''<font size="+2">[[GEOS-Chem overview]]</font>''' |
| + | |-valign="top" |
| + | |width="225px" align="center"|<font size="+2">[[GEOS-Chem versions|Past releases]]</font> |
| + | |width="450px" align="center" bgcolor="#CCFFFF"|<font size="+2">[[GEOS-Chem 14.4.3|'''Current release: GEOS-Chem 14.4.3''']]</font> |
| + | |width="225px" align="center"|<font size="+2">[[GEOS-Chem model development_priorities|Future releases]]</font> |
| | | |
| |} | | |} |
| | | |
− | {|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
| + | == News == |
− | |-valign="top" align="center"
| + | *13 Aug 2024: [[GEOS-Chem 14.4.3]] is now available! |
− | |width="334px"|'''Getting started w/ GEOS-Chem:'''
| + | *03 Jul 2024: We have started migrating older content to the [[GEOS-Chem Wiki archives]]. |
− | |width="333px"|'''[[GEOS-Chem welcome letter for new users|Welcome letter for new users]]'''
| + | *02 Feb 2024: Read the [https://drive.google.com/file/d/1v0cHAf6S8EMpUZNb7eVqvcRwbIAIxpRI/view?usp=sharing GEOS-Chem Newsletter 2024, Issue #1] |
− | |width="333px"|'''[[GEOS-Chem basics]]'''
| + | *A [https://scholar.google.com/citations?user=ho-sNj4AAAAJ GEOS-Chem Google Scholar page] is now available! |
| + | **Click 'Follow' to be notified of new publications. |
| + | **Contact [mailto:rebekah.horner.20@ucl.ac.uk Bex Horner] with issues or questions. |
| + | *The GEOS-Chem Youtube Channel has 350+ subscribers and a new URL: <tt>'''https://www.youtube.com/~geoschem'''</tt> |
| + | *NASA/GMAO is now producing [https://gmao.gsfc.nasa.gov/weather_prediction/GEOS-CF/ GEOS chemical forecasts (GEOS-CF)] using GEOS-Chem coupled to the NASA/GEOS ESM |
| | | |
− | |-valign="top" bgcolor="#CCFFFF" align="center"
| + | For access to all past GEOS-Chem newsletters, visit [[GEOS-Chem newsletters|this page]]. |
− | |'''Current public release:'''
| + | |
− | |'''[[GEOS-Chem v11-01]]'''
| + | |
− | |'''[[GEOS-Chem v11-01 benchmark history|v11-01 benchmark history]]'''
| + | |
| | | |
− | |-valign="top" align="center"
| + | == Documentation == |
− | |'''Version in development:'''
| + | |
− | |'''[[GEOS-Chem v11-02]]'''
| + | |
− | |'''[[GEOS-Chem v11-02 benchmark history|v11-02 benchmark history]]'''
| + | |
| | | |
− | |-valign="top" align="center"
| + | === Archives === |
− | |'''Version for HPC environments:'''
| + | |
− | |'''[[GEOS-Chem HP]]'''
| + | |
− | |'''[[GEOS-Chem HP Status]]'''
| + | |
| | | |
− | |-valign="top" align="center"
| + | In order to prepare for a migration of the wiki platform, we have archived many of the oldest wiki pages to PDF format. Please see our '''[[GEOS-Chem Wiki archives]]''' to view these pages. |
− | |'''List of publications:'''
| + | |
− | |'''[http://acmg.seas.harvard.edu/geos/geos_pub.html Refer to this page]'''
| + | |
− | |
| + | |
| | | |
− | |-valign="top" align="center"
| + | === GEOS-Chem manuals and tutorials === |
− | |'''GEOS-Chem public license:'''
| + | |
− | |'''[[Media:LICENSE.txt|License agreement document]]'''
| + | |
− | |'''[[Media:AUTHORS.txt|List of developers]]'''
| + | |
| | | |
− | |}
| + | Read [https://geos-chem.readthedocs.io/en/latest/geos-chem-shared-docs/supplemental-guides/related-docs.html '''user manuals'''] for GEOS-Chem 14 and related software. Also see our [[GEOS-Chem in CESM]] wiki page for more information about running GEOS-Chem in the NCAR CESM Earth System Model. |
| | | |
− | <br>
| + | Also see our list of [[Software_maintained_by_GEOS-Chem_community_members|'''software tools maintained by GEOS-Chem users''']]. |
| | | |
− | {|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
| + | The user manual for GEOS-Chem 13.4.1 and prior versions may be found '''[https://geoschem.github.io/gcclassic-manpage-archive/ HERE]'''. |
| | | |
− | |-height="50" bgcolor="#00AAAA" align="center"
| + | === General information about GEOS-Chem === |
− | |colspan="2"|<p><font color="#FFFFFF" size="+2">'''General information about GEOS-Chem'''</font></p>
| + | |
| | | |
− | |-valign="top" bgcolor="#CCCCCC" | + | The table below lists where you can find general information about GEOS-Chem. |
− | !width="1000px" colspan="2"|<big>Introduction to GEOS-Chem and the International GEOS-Chem User Community</big>
| + | |
| + | {| border=1 cellpadding=5 cellspacing=0 |
| | | |
| |-valign="top" | | |-valign="top" |
− | |width="500px"| <!-- Intro and overview -->
| + | !width="200px" bgcolor="#CCCCCC"|Item |
− | *[http://acmg.seas.harvard.edu/geos/geos_overview.html Overview of GEOS-Chem and its user community]
| + | !width="360px" bgcolor="#CCCCCC"|Link |
− | **[http://acmg.seas.harvard.edu/geos/geos_people.html GEOS-Chem People & Projects]
| + | !width="365px" bgcolor="#CCCCCC"|Description |
− | ** [[GEOS-Chem Support Team]]
| + | |
− | ** [[GEOS-Chem newsletters]]
| + | |
− | ** [http://acmg.seas.harvard.edu/geos/geos_new_developments.html Recommendations for offering co-authorships to GEOS-Chem developers]
| + | |
− | ** [[GEOS-Chem_versions_under_development|GEOS-Chem code development history]]
| + | |
− | ** [http://acmg.seas.harvard.edu/geos/geos_chem_narrative.html Narrative description of GEOS-Chem]
| + | |
− | * [[GEOS-Chem basics|Basic information about getting set up with GEOS-Chem]]
| + | |
− | ** [[GEOS-Chem welcome letter for new users]]
| + | |
− | ** [[Features of the GEOS-Chem public wiki]]
| + | |
− | ** [[Customizing your GEOS-Chem Wiki Settings]]
| + | |
− | ** [http://acmg.seas.harvard.edu/geos/geos_search.html GEOS-Chem Search Engines]
| + | |
− | |width="500px"| <!-- Steering committee etc -->
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_steering_cmte.html GEOS-Chem Steering Committee]
| + | |
− | ** [[GEOS-Chem model development priorities]]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_working_groups.html GEOS-Chem Working Groups]
| + | |
− | ** [[GEOS-Chem Adjoint|Adjoint Model and Data Assimilation Working Group]]
| + | |
− | ** [[Aerosols Working Group]]
| + | |
− | ** [[Carbon Cycle Working Group]]
| + | |
− | ** [[Chemistry-Ecosystems-Climate Working Group]]
| + | |
− | ** [[GEOS-Chem High Performance Working Group]]
| + | |
− | ** [[Hg and POPs Working Group]]
| + | |
− | ** [[Chemistry Issues|Chemistry Working Group]]
| + | |
− | ** [[Emissions and Deposition Working Group]]
| + | |
− | ** [[Transport Working Group]]
| + | |
− | *[[GEOS-Chem Nested Model]]
| + | |
| | | |
− | |-valign="top" bgcolor="#CCCCCC" | + | |-valign="top" |
− | !width="1000px" colspan="2"|<big>Getting started with GEOS-Chem</big>
| + | |'''GEOS-Chem website''' |
| + | |[http://www.geos-chem.org geos-chem.org] |
| + | |Website that links to GEOS-Chem information and resources |
| | | |
| |-valign="top" | | |-valign="top" |
− | | | + | |'''Welcome Letter''' |
− | * [[GEOS-Chem basics]] (e.g. tutorials, user guides, etc.)
| + | |[http://geos-chem.org/welcome.html geos-chem.org/welcome.html] |
− | * [[Frequently asked questions about GEOS-Chem]]
| + | |A welcome letter for new users of GEOS-Chem |
− | * [[Minimum system requirements for GEOS-Chem]]
| + | |
− | * [[Downloading GEOS-Chem source code and data]]
| + | |
− | * [[GEOS-Chem performance]]
| + | |
− | * [[Creating GEOS-Chem run directories]]
| + | |
− | * [[GEOS-Chem coding style guide]]
| + | |
− | * GEOS-Chem [[GEOS-Chem horizontal grids|horizontal grids]] and [[GEOS-Chem vertical grids|vertical grids]]
| + | |
− | |
| + | |
− | * [[Initial conditions for GEOS-Chem]]
| + | |
− | * [[Centralized chemistry time step]]
| + | |
− | * [[GEOS-Chem coding and debugging#GEOS-Chem debugging tips|Tips on how to debug GEOS-Chem effectively]]
| + | |
− | * [[Parallelizing GEOS-Chem]] with the OpenMP directives
| + | |
− | * [[Common GEOS-Chem error messages]]
| + | |
− | * [[Adding tracers to GEOS-Chem|Adding tracers to GEOS-Chem (v10-01 and prior)]]
| + | |
− | * [[GEOS-Chem_species_database#Adding_new_species_to_the_GEOS-Chem_species_database|Adding species to GEOS-Chem (v11-01 and later)]]
| + | |
− | * [[Adding passive species to GEOS-Chem]]
| + | |
− | |}
| + | |
| | | |
− | <br>
| + | |-valign="top" |
− | | + | |'''GEOS-Chem Overview''' |
− | {|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
| + | |[[GEOS-Chem overview]] (wiki page) |
− | | + | |A page with linking to many GEOS-Chem topics. |
− | |-height="50" bgcolor="#00AAAA" align="center" | + | |
− | |colspan="2"|<p><font color="#FFFFFF" size="+2">'''GEOS-Chem Code Developers' Forums'''</font></p> | + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC" | + | |
− | !width="500px"|<big>Coding</big>
| + | |
− | !width="500px"|<big>Meteorological Fields</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | | <!-- Coding --> | + | |'''GEOS-Chem Narrative''' |
− | *Software development
| + | |[http://geos-chem.org/narrative.html geos-chem.org/narrative.html] |
− | **[[GEOS-Chem versions under development]]
| + | |A narrative descrption of GEOS-Chem that you can include in scientific papers (plus instructions for citing GEOS-Chem) |
− | **[[Version control with Git]]
| + | |
− | *[[GEOS-Chem coding and debugging]]
| + | |
− | **[[GEOS-Chem coding style guide]]
| + | |
− | **[[Bugs and fixes|List of GEOS-Chem bugs and in which version they were resolved]]
| + | |
− | **[[Currently unresolved issues in GEOS-Chem]]
| + | |
− | **[[Known issues caused by compiler bugs|Known GEOS-Chem issues caused by compiler bugs]]
| + | |
− | **[[Machine issues & portability|Machine issues and portability]]
| + | |
− | **[[Debugging with the GEOS-Chem unit tester]]
| + | |
− | **[[Performing Difference Tests with GEOS-Chem]]
| + | |
− | **[[Common GEOS-Chem error messages]]
| + | |
− | **[[GEOS-Chem_coding_and_debugging#Reporting_GEOS-Chem_bugs_to_the_GEOS-Chem_Support_Team|Reporting GEOS-Chem bugs to the GCST]]
| + | |
− | *[[GEOS-Chem performance]]
| + | |
− | **[[Profiling GEOS-Chem]]
| + | |
− | **[[Passing array arguments efficiently in GEOS-Chem]]
| + | |
− | **[[Floating point math issues]]
| + | |
− | **[[GEOS-Chem performance#7-day time tests|Results from 7-day timing tests]]
| + | |
− | | <!-- Met fields -->
| + | |
− | *[[Overview of GMAO met data products]]
| + | |
− | **[[Version history of GMAO met data products]]
| + | |
− | **[[Available met data for nested grid simulations]]
| + | |
− | **[[List of reprocessed met fields]]
| + | |
− | *[[MERRA-2|GMAO MERRA-2]]
| + | |
− | **[[List of MERRA-2 met fields|List of MERRA-2 met fields used by GEOS-Chem]]
| + | |
− | **[[MERRA-2 implementation details|Implementing MERRA-2 into GEOS-Chem]]
| + | |
− | *[[GEOS-FP|GMAO GEOS-FP]]
| + | |
− | **[[List of GEOS-FP met fields|List of GEOS-FP met fields used by GEOS-Chem]]
| + | |
− | **[[GEOS-FP implementation details|Implementing GEOS-FP into GEOS-Chem]]
| + | |
− | *[[MERRA|GMAO MERRA "reanalysis"]]
| + | |
− | **[[List of MERRA met fields|List of MERRA met fields used by GEOS-Chem]]
| + | |
− | **[[MERRA implementation details|Implementing MERRA into GEOS-Chem]]
| + | |
− | *[[GEOS-5|GMAO GEOS-5.2.0]]
| + | |
− | **[[List of GEOS-5 met fields|List of GEOS-5.2.0 met fields used by GEOS-Chem]]
| + | |
− | **[[GEOS-5 issues|Issues with GEOS-5.2.0 met data]]
| + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC"
| + | |
− | !width="500px"|<big>Emissions</big>
| + | |
− | !width="500px"|<big>Chemistry</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | |<!-- Emissions --> | + | |'''GEOS-Chem New Developments''' |
− | *[[HEMCO|HEMCO emissions component]]
| + | |[http://geos-chem.org/new-developments.html geos-chem.org/new-developments.html] |
− | **[[HEMCO data directories]]
| + | |A list of significant GEOS-Chem updates and the developers who worked on them |
− | **[[The HEMCO User's Guide]]
| + | |
− | **[[Implementation of HEMCO in GEOS-Chem]]
| + | |
− | *Emissions categories
| + | |
− | **[[Aerosol emissions]]
| + | |
− | **[[Aircraft emissions]]
| + | |
− | **[[Anthropogenic emissions]]
| + | |
− | **[[Scale factors for anthropogenic emissions]]
| + | |
− | **[[Biofuel emissions]]
| + | |
− | **[[Biogenic emissions]]
| + | |
− | **[[Biomass burning emissions]]
| + | |
− | **[[Lightning NOx emissions]]
| + | |
− | **[[Ship emissions]]
| + | |
− | **[[Soil NOx emissions]]
| + | |
− | **[[Volcanic SO2 emissions from Aerocom|Volcanic emissions]]
| + | |
− | **[[Historical and Future Emissions|Historical and future emissions]]
| + | |
− | |<!-- Chemistry -->
| + | |
− | *[[GEOS-Chem chemistry mechanisms]]
| + | |
− | **[[GEOS-Chem chemistry mechanisms#Stratospheric chemistry|Stratopsheric chemistry options]]
| + | |
− | **[[GEOS-Chem chemistry mechanisms#Specialty simulations|Specialty simulations (aka "offline simulations")]]
| + | |
− | **[[Photolysis mechanism|Photolysis mechanisms used in GEOS-Chem]]
| + | |
− | *[[Species in GEOS-Chem]]
| + | |
− | **[[GEOS-Chem species database]]
| + | |
− | **[[Physical properties of GEOS-Chem species]]
| + | |
− | **[[GEOS-Chem species units]]
| + | |
− | **[[Species indexing in GEOS-Chem]]
| + | |
− | *Other resources
| + | |
− | **[[FlexChem]]
| + | |
− | **[[Chemistry Issues]]
| + | |
− | **[[Process Analysis Diagnostics]]
| + | |
− | **[[Linking GEOS-Chem to CMAQ]]
| + | |
− | **[[Coupling GEOS-Chem with RRTMG]]
| + | |
− | **[[DSMACC chemical box model]]
| + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC"
| + | |
− | !width="500px"|<big>Dynamics</big>
| + | |
− | !width="500px"|<big>Deposition</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | | <!-- Dynamics --> | + | |'''GEOS-Chem Steering Committee (GCSC)''' |
− | *[[Advection scheme TPCORE]]
| + | |[http://geos-chem.org/steering-committee.html geos-chem.org/steering-committee.html] |
− | *[[Boundary layer mixing]]
| + | |A listing of current GCSC members and minutes from GCSC meetings |
− | *[[Cloud convection]]
| + | |
− | *[[Dynamic tropopause]]
| + | |
− | | <!-- Deposition -->
| + | |
− | *[[Dry deposition]]
| + | |
− | **[[Leaf area indices in GEOS-Chem]]
| + | |
− | **[[Olson land map]]
| + | |
− | *[[Wet deposition]]
| + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC" | + | |
− | !width="500px"|<big>Aerosols</big>
| + | |
− | !width="500px"|<big>Benchmarking and Evaluation</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | | <!-- Aerosols --> | + | |'''GEOS-Chem Working Groups''' |
− | *[[Aerosol-only simulation]]
| + | |[http://geos-chem.org/working-groups geos-chem.org/working-groups.html] |
− | *[[Aerosol optical properties]]
| + | |A listing of GEOS-Chem Working Groups and Working Group Co-Chairs |
− | *[[Aerosol thermodynamical equilibrium]]
| + | |
− | *[[Carbonaceous aerosols]]
| + | |
− | *[[Mineral dust aerosols]]
| + | |
− | *[[Secondary organic aerosols]]
| + | |
− | *[[Sea salt aerosols]]
| + | |
− | *[[Sulfate aerosols]]
| + | |
− | *Aerosol Microphysics
| + | |
− | **[[APM aerosol microphysics|APM]]
| + | |
− | **[[TOMAS aerosol microphysics|TOMAS]]
| + | |
− | | <!-- Benchmarks -->
| + | |
− | *[[GEOS-Chem_benchmarking|General info about GEOS-Chem benchmark simulations]]
| + | |
− | **[[GEOS-Chem_versions_under_development|List of GEOS-Chem 1-year benchmark simulations]]
| + | |
− | **[[Mean OH concentration]]
| + | |
− | **[[GEOS-Chem v11-01 benchmark history]]
| + | |
− | **[[GEOS-Chem v10-01 benchmark history]]
| + | |
− | **[[GEOS-Chem v9-02 benchmark history]]
| + | |
− | **[ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1yr_benchmarks/ FTP site with output from 1-year GEOS-Chem benchmark simulations]
| + | |
− | *Other resources
| + | |
− | **[[GEOS-Chem participation in community intercomparisons]]
| + | |
− | **[[Satellite_Specifications_Table|Satellite Instrument Specifications Table]]
| + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC"
| + | |
− | !width="500px"|<big>Nested grid simulations</big>
| + | |
− | !width="500px"|<big>Diagnostics</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | | <!-- Nested grid --> | + | |'''GEOS-Chem Versions''' |
− | *[[GEOS-Chem nested grid simulations]]
| + | |[[GEOS-Chem versions]] (wiki page) |
− | *[[Setting up GEOS-Chem nested grid simulations]]
| + | |A listing of GEOS-Chem versions (with links for more information) |
− | *[[Available met data for nested grid simulations]]
| + | |
− | *[http://acmg.seas.harvard.edu/geos/wiki_docs/nested_grids/geos_data_downloads.pdf Protocol for nested-grid data downloads]
| + | |
− | *[[Steps to setup new nested domains]]
| + | |
− | *[[GEOS-Chem nested model publications]]
| + | |
− | | <!-- Diagnostics --> | + | |
− | *[[List of diagnostics for v11-01|List of current GEOS-Chem diagnostics]]
| + | |
− | *[[The HEMCO User's Guide#Diagnostics|Archiving diagnostics from HEMCO to netCDF files]]
| + | |
− | *[[Diagnostic time step]]
| + | |
− | *[[Mass Flux (ND24/25/26)]]
| + | |
− | *[[Additional diagnostics]]
| + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC"
| + | |
− | !width="500px"|<big>Related projects</big>
| + | |
− | !width="500px"|<big>Other resources</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | |<!-- Projects --> | + | |'''GEOS-Chem Species List''' |
− | *[[GEOS-Chem HP]]
| + | |[https://geos-chem.readthedocs.io/en/latest/geos-chem-shared-docs/supplemental-guides/species-guide.html View GEOS-Chem Species properties] (ReadTheDocs page) |
− | *[[GEOS-Chem Adjoint]]
| + | |A listing of the species used in the GEOS-Chem chemistry mechanisms |
− | *[[GEOS-Chem Near-Real-Time Simulations]]
| + | |
− | *[[FlexAOD]]
| + | |
− | *[[ATom Field Campaign]]
| + | |
− | |<!-- Other resources --> | + | |
− | *[http://www.researcherid.com/rid/C-5595-2014 GEOS-Chem publications page on ResearcherID]
| + | |
− | *[http://acmg.seas.harvard.edu/geos/meetings/2017/index.html IGC8 Meeting (May 2017) web site]
| + | |
− | *[http://acmg.seas.harvard.edu/geos/meetings/2015/presentationsposters.html Presentations from the IGC7 meeting (2015)]
| + | |
− | *[http://acmg.seas.harvard.edu/geos/meetings/2013/presentations.html Presentations from the IGC6 meeting (2013)]
| + | |
− | |}
| + | |
− | | + | |
− | <br>
| + | |
− | | + | |
− | {|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
| + | |
− | | + | |
− | |-height="50" bgcolor="#00AAAA" align="center"
| + | |
− | |colspan="2"|<p><font color="#FFFFFF" size="+2">'''Reference Section'''</font></p>
| + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC"
| + | |
− | !width="500px"|<big>IDL</big>
| + | |
− | !width="500px"|<big>GAMAP</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | | <!-- IDL --> | + | |'''GEOS-Chem Guides''' |
− | *[http://www.harrisgeospatial.com/docs/using_idl_home.html Using IDL (Harris Geospatial Solutions site)]
| + | |[[GEOS-Chem_overview#GEOS-Chem_Guides|GEOS-Chem Guides (wiki page)]] |
− | *[http://idlastro.gsfc.nasa.gov/idl_html_help/Structures.html Structures in IDL]
| + | |List of several user guides explaining topics in-depth |
− | *[http://idlastro.gsfc.nasa.gov/idl_html_help/Pointers.html Pointers in IDL]
| + | |
− | *[http://idlastro.gsfc.nasa.gov/idl_html_help/Overview_of_Mathematics_in_IDL.html Overview of Mathematics in IDL]
| + | |
− | *[http://idlastro.gsfc.nasa.gov/homepage.html IDL Astronomy User's Library]
| + | |
− | *[http://fermi.jhuapl.edu/s1r/idl/idl.html JHU/APL/S1R IDL routines page]
| + | |
− | *[http://cow.physics.wisc.edu/~craigm/idl/idl.html Craig Markwardt's IDL library]
| + | |
− | *[[Reading binary files in IDL]]
| + | |
− | | <!-- GAMAP -->
| + | |
− | *[http://acmg.seas.harvard.edu/gamap/ GAMAP web page]
| + | |
− | *[http://acmg.seas.harvard.edu/gamap/doc/ GAMAP on-line users' guide]
| + | |
− | *[[GAMAP bugs and fixes]]
| + | |
− | *[[GAMAP tips and tricks]]
| + | |
− | **[[General GAMAP usage]]
| + | |
− | **[[TVMAP cheat sheet]]
| + | |
− | **[[File I/O with GAMAP]]
| + | |
− | ***[http://acmg.seas.harvard.edu/gamap/doc/timeseries_brief_tutorial.pdf Working with timeseries output in GAMAP]
| + | |
− | **[[Color and graphics with GAMAP]]
| + | |
− | ***[http://acmg.seas.harvard.edu/geos/wiki_docs/gamap/gamap_color_table_file.pdf Loading Color Tables in GAMAP v2.12]
| + | |
− | *** [http://acmg.seas.harvard.edu/forum_files/cdh_ColorInIDL.pdf Working with color in IDL by Chris Holmes]
| + | |
− | **[[Regridding with GAMAP]]
| + | |
− | **[[Date and time computations with GAMAP]]
| + | |
− | **[[Text manipulation with GAMAP]]
| + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC"
| + | |
− | !width="500px"|<big>Fortran</big>
| + | |
− | !width="500px"|<big>Perl</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | |<!-- Fortran --> | + | |'''Requesting Support''' |
− | *[[Intel Fortran Compiler]]
| + | |[https://geos-chem.readthedocs.io/en/latest/help-and-reference/SUPPORT.html GEOS-Chem support guidelines] |
− | **[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v11.pdf Version 11.1]
| + | |ReadTheDocs page with instructions for creating GEOS-Chem support requests using the Github issue trackers |
− | **[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v12.pdf Version 12.1]
| + | |
− | **[https://nf.nci.org.au/facilities/software/intel-ct/13.2.146/Documentation/en_US/compiler_f/main_for/index.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747 Version XE 13.1]
| + | |
− | **[https://software.intel.com/en-us/compiler_15.0_ug_f Version 15.0]
| + | |
− | **[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/PDF_Fortran_Compiler_UG_17_0.pdf Version 17]
| + | |
− | *[[PGI Fortran compiler]]
| + | |
− | **[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgiug.pdf User Guide]
| + | |
− | **[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgifortref.pdf Reference Guide]
| + | |
− | *[[GNU Fortran compiler]]
| + | |
− | *[[GEOS-Chem basics#Fortran resources|Fortran tutorials]]
| + | |
− | |<!-- Perl --> | + | |
− | *[http://www.perl.com Perl.com]
| + | |
− | *[http://www.perl.org/books/beginning-perl/ ''Beginning Perl'' by Simon Cozens (free online book)]
| + | |
− | *[http://backpan.perl.org/authors/id/Q/QU/QUONG/perlin20.html Perl in 20 pages]
| + | |
− | *[http://www.enginsite.com/Library-Robert%27s-Perl-Tutorial.htm MediaWiki User's Guide]
| + | |
− | *[http://www.cpan.org/ Comprehensive Perl Archive Network (CPAN.org)]
| + | |
− | | + | |
− | |-valign="top" bgcolor="#CCCCCC"
| + | |
− | !width="500px"|<big>R</big>
| + | |
− | !width="500px"|<big>Python</big>
| + | |
| | | |
| |-valign="top" | | |-valign="top" |
− | |<!-- R --> | + | |'''Submitting code or data''' |
− | *[http://www.r-project.org/ The R project for statistical computing]
| + | |[https://geos-chem.readthedocs.io/en/latest/help-and-reference/CONTRIBUTING.html GEOS-Chem contributing guidelines] |
− | *[http://journal.r-project.org/ The R journal]
| + | |ReadTheDocs page with instructions for submitting new source code or data updates to be included into GEOS-Chem. |
− | *[http://www.mayin.org/ajayshah/KB/R/index.html R by example]
| + | |
− | *[[Using R to analyze GEOS-Chem data]]
| + | |
− | |<!-- Python --> | + | |
− | *[[Python code for GEOS-Chem]]
| + | |
− | *[http://www.python.org Python.org]: Main site for all things Python
| + | |
− | *[http://docs.python.org/2/tutorial/ Python.org Tutorial]
| + | |
− | *[http://wiki.python.org/moin/BeginnersGuide/Programmers PythonWiki.org: List of tutorials and resources]
| + | |
− | *[https://developers.google.com/edu/python/ Google's Python tutorial]
| + | |
| | | |
− | |-valign="top" bgcolor="#CCCCCC"
| |
− | !width="500px"|<big>NCAR Command Language (NCL)</big>
| |
− | !width="500px"|<big>Wiki documentation</big>
| |
− |
| |
− | |-valign="top"
| |
− | |<!-- NCL -->
| |
− | *[http://www.ncl.ucar.edu/ NCL main page]
| |
− | *[http://www.ncl.ucar.edu/Applications/ NCL applications]
| |
− | *[http://www.ncl.ucar.edu/Document/ NCL documentation]
| |
− | *[http://www.ncl.ucar.edu/Support/email_lists.shtml Sign up for NCL-Talk email list]
| |
− | *[[NCL_tools_for_GEOS-Chem|NCL4GC: NCL tools for GEOS-Chem]]
| |
− | |<!-- Wiki doc -->
| |
− | *[[Sandbox]]
| |
− | *[http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
| |
− | *[http://meta.wikimedia.org/wiki/Help:Contents MediaWiki User's Guide]
| |
− | *[http://meta.wikimedia.org/wiki/Help:Wikitext Examples of Wiki markup text]
| |
− | *[http://meta.wikimedia.org/wiki/Help:Reference_card One-page editing reference card]
| |
− | *[http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration Settings list]
| |
− | *[http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
| |
| |} | | |} |
In order to prepare for a migration of the wiki platform, we have archived many of the oldest wiki pages to PDF format. Please see our GEOS-Chem Wiki archives to view these pages.
The table below lists where you can find general information about GEOS-Chem.