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− | <!-- ======================================================== -->
| + | __NOTOC__ |
− | <!-- ===== TOP TITLE ===== -->
| + | {|border="1" width="925px" bordercolor="#000000" cellspacing="0" cellpadding="5" |
− | <!-- ======================================================== -->
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− | <table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding=5" align="center">
| + | |-valign="middle" height="80" bgcolor="##4494cc;" align="center" |
− | <tr bgcolor="#0099FF">
| + | |<p><font color="#FFFFFF" size="+3">'''GEOS–Chem Wiki'''</font></p> |
− | <th colspan="2" height="80" valign="middle"><p><font color="#FFFFFF" size="+3">GEOS–Chem Wiki</font></p></th>
| + | |
− | </tr>
| + | |
− | </table>
| + | |
| | | |
− | <blockquote><p align="justify">The [http://acmg.seas.harvard.edu/geos/ GEOS–Chem model] is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the [http://gmao.gsfc.nasa.gov/ NASA Global Modeling and Assimilation Office]. It is applied by [http://acmg.seas.harvard.edu/geos/geos_people.html research groups around the world] to a wide range of atmospheric composition problems, Central management and support of the model is provided by the [http://acmg.seas.harvard.edu/index.html Atmospheric Chemistry Modeling Group at Harvard University.]</p></blockquote>
| + | |} |
| | | |
− | <blockquote><p align="justify">This wiki is meant to facilitate communication between GEOS-Chem users and developers. If this is '''your first time here''', check out [[Features of the GEOS-Chem public wiki|the features page]]. If you would like to contribute to the wiki, please register as a user by clicking ''create account'' at the top right corner of this page.</p></blockquote>
| + | {|border="0" width="925px" bordercolor="#FFFFFF" cellspacing="0" cellpadding="5" |
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− | <blockquote><p align="justify">New information is continually being added to the wiki, so please check back here often, or even better, [[Features_of_the_GEOS-Chem_public_wiki#Let_the_GEOS-Chem_wiki_inform_you_of_recent_changes.21|subscribe to the recent changes' RSS feed]]: you will not miss a discussion!</p></blockquote>
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− | <blockquote>
| + | ---- |
− | <table width="1000px" border="1" bordercolor="#000000" cellspacing="0" cellpadding=10">
| + | |
− | <tr>
| + | |
− | <td bgcolor="#CCFFFF"><p align="center"><big><strong>Current public release:</strong></big></p></td>
| + | |
− | <td bgcolor="#CCFFFF"><p align="center"><big><strong>[[GEOS-Chem v10-01]]</strong></big></p></td>
| + | |
− | <td bgcolor="#CCFFFF"><p align="center"><big><strong>[[GEOS-Chem v10-01 benchmark history|v10-01 benchmark history]]</strong></big></p></td>
| + | |
− | </tr>
| + | |
− | <tr>
| + | |
− | <td width="300px"><p align="center"><big><strong>Version in development:</strong></big></p></td>
| + | |
− | <td width="250px"><p align="center"><big><strong>[[GEOS-Chem v11-01]]</strong></big></p></td>
| + | |
− | <td width="250px"><p align="center"><big><strong>[[GEOS-Chem v11-01 benchmark history|v11-01 benchmark history]]</strong></big></p></td>
| + | |
− | </tr>
| + | |
− | <tr>
| + | |
− | <td><p align="center"><big><strong>Version for high-performance computing (HPC) environments:</strong></big></p></td>
| + | |
− | <td><p align="center"><big><strong>[[GEOS-Chem HP]]</strong></big>
| + | |
− | </p></td>
| + | |
− | <td> </td>
| + | |
− | <tr>
| + | |
− | <tr>
| + | |
− | <td><p align="center"><big><strong>Supported meteorological fields:</strong></big></p></td>
| + | |
− | <td><p align="center"><big><strong>[[Overview_of_GMAO_met_data_products#GMAO_met_field_comparison_chart|Refer to this table]]</strong></big>
| + | |
− | </p></td>
| + | |
− | <td> </td>
| + | |
− | <tr>
| + | |
− | <td><p align="center"><big><strong>List of publications:</strong></big></p></td>
| + | |
− | <td><p align="center"><big><strong>[http://acmg.seas.harvard.edu/geos/geos_pub.html Refer to this page]</strong></big>
| + | |
− | </p></td>
| + | |
− | <td> </td>
| + | |
− | </tr>
| + | |
− | <tr>
| + | |
− | <td><p align="center"><big><strong>Info for getting started:</strong></big></p></td>
| + | |
− | <td><p align="center"><big><strong>[[GEOS-Chem welcome letter for new users]]<br>[[GEOS-Chem basics]]</strong></big>
| + | |
− | </p></td>
| + | |
− | <td> </td>
| + | |
− | </tr>
| + | |
− | </table>
| + | |
− | </blockquote>
| + | |
| | | |
− | <!-- ======================================================== --> | + | <p align="center"><big>'''GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment<br>through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.'''</big></p> |
− | <!-- ===== GENERAL INFO ABOUT GEOS-CHEM ===== --> | + | |
− | <!-- ======================================================== -->
| + | |
− | <p> </p> | + | |
− | <table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center">
| + | |
| | | |
− | <tr bgcolor="#00AAAA">
| + | The [http://geos-chem.org GEOS–Chem model] is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the [http://gmao.gsfc.nasa.gov/ NASA Global Modeling and Assimilation Office]. It is applied by [https://geoschem.github.io/geos-chem-people-projects-map/ research groups around the world] to a wide range of atmospheric composition problems. Central management and support of the model is provided by the [https://acmg.seas.harvard.edu/ Atmospheric Chemistry Modeling Group at Harvard University] and by the [https://sites.wustl.edu/acag/ Atmospheric Composition Analysis Group at Washington University]. |
− | <th colspan="2" height="50" valign="middle"><p><font color="#FFFFFF" size="+2">General information about GEOS–Chem</font></p></th>
| + | |
− | </tr>
| + | |
| | | |
− | <!-- ======================================================== -->
| + | |} |
− | <!-- ===== GENERAL INFO : FIRST ROW ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
| | | |
− | <!-- Header title -->
| + | {|border="1" width="925px" bordercolor="#000000" cellspacing="0" cellpadding="5" |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>Introduction and overview</big></th>
| + | |
− | <th width="50%"scope="col"><big>Steering Committee And Working Groups</big></th>
| + | |
− | </tr>
| + | |
| | | |
− | <tr> | + | |-valign="top" |
| + | |colspan="3" align="center" bgcolor="#CCCCCC"|'''<font size="+2">[[GEOS-Chem overview]]</font>''' |
| + | |-valign="top" |
| + | |width="225px" align="center"|<font size="+2">[[GEOS-Chem versions|Past releases]]</font> |
| + | |width="450px" align="center" bgcolor="#CCFFFF"|<font size="+2">[[GEOS-Chem 14.3.1|'''Current release: GEOS-Chem 14.3.1''']]</font> |
| + | |width="225px" align="center"|<font size="+2">[[GEOS-Chem model development_priorities|Future releases]]</font> |
| | | |
− | <!-- Introduction & Overview: Links -->
| + | |} |
− | <td width="50%" valign="top">
| + | |
− | * [[GEOS-Chem welcome letter for new users]]
| + | |
− | * [[GEOS-Chem basics]]
| + | |
− | * [[Features of the GEOS-Chem public wiki]]
| + | |
− | * [[Customizing your GEOS-Chem Wiki Settings]]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_overview.html GEOS-Chem Overview]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_people.html GEOS-Chem People & Projects]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/word_pdf_docs/resources_guidelines_tips.pdf User Resources, Code Development Guidelines, and Debugging Tips]
| + | |
− | * [[GEOS-Chem Support Team]]
| + | |
− | * [[GEOS-Chem newsletters]]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_search.html GEOS-Chem Search Engines]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_new_developments.html Recommendations for offering co-authorships to GEOS-Chem developers]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_dev_history.html GEOS-Chem code development history]
| + | |
| | | |
− | </td> | + | == News == |
| + | *02 Apr 2024: [[GEOS-Chem 14.3.1]] is now available! |
| + | *02 Feb 2024: Read the [https://drive.google.com/file/d/1v0cHAf6S8EMpUZNb7eVqvcRwbIAIxpRI/view?usp=sharing GEOS-Chem Newsletter 2024, Issue #1] |
| + | *A [https://scholar.google.com/citations?user=ho-sNj4AAAAJ GEOS-Chem Google Scholar page] is now available! |
| + | **Click 'Follow' to be notified of new publications. |
| + | **Contact [mailto:rebekah.horner.20@ucl.ac.uk Bex Horner] with issues or questions. |
| + | *The GEOS-Chem Youtube Channel has 350+ subscribers and a new URL: <tt>'''https://www.youtube.com/~geoschem'''</tt> |
| + | *NASA/GMAO is now producing [https://gmao.gsfc.nasa.gov/weather_prediction/GEOS-CF/ GEOS chemical forecasts (GEOS-CF)] using GEOS-Chem coupled to the NASA/GEOS ESM |
| | | |
− | <!-- Steering Committee and Working Groups: Links -->
| + | For access to all past GEOS-Chem newsletters, visit [[GEOS-Chem newsletters|this page]]. |
− | <td width="50%" valign="top">
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_steering_cmte.html GEOS-Chem Steering Committee]
| + | |
− | ** [[GEOS-Chem model development priorities]]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_working_groups.html GEOS-Chem Working Groups]
| + | |
− | ** [[GEOS-Chem Adjoint|Adjoint Model and Data Assimilation Working Group]]
| + | |
− | ** [[Aerosols Working Group]]
| + | |
− | ** [[Carbon Cycle Working Group]]
| + | |
− | ** [[Chemistry-Climate Working Group]]
| + | |
− | ** [[GEOS-Chem High Performance Working Group]]
| + | |
− | ** [[Hg and POPs Working Group]]
| + | |
− | ** [[Organics Working Group]]
| + | |
− | ** [[Chemistry Issues|Oxidants and Chemistry Working Group]]
| + | |
− | ** [[Nested Model Working Group]]
| + | |
− | ** [[Sources and Sinks Working Group|Sources and Surface Uptake Working Group]]
| + | |
− | ** [[Transport Working Group]]
| + | |
− | </td>
| + | |
| | | |
− | </tr>
| + | == Documentation == |
| | | |
− | <!-- ======================================================== -->
| + | === GEOS-Chem manuals and tutorials === |
− | <!-- ===== GENERAL INFO : SECOND ROW ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
| | | |
− | <!-- Header title -->
| + | Read [https://geos-chem.readthedocs.io/en/latest/geos-chem-shared-docs/supplemental-guides/related-docs.html '''user manuals'''] for GEOS-Chem 14 and related software. |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>Getting Started With GEOS-Chem</big></th>
| + | |
− | <th width="50%"scope="col"><big>General Technical Information</big></th>
| + | |
− | </tr>
| + | |
| | | |
− | <tr>
| + | Also see our list of [[Software_maintained_by_GEOS-Chem_community_members|'''software tools maintained by GEOS-Chem users''']]. |
| | | |
− | <!-- Getting Started With GEOS-Chem: Links -->
| + | The user manual for GEOS-Chem 13.4.1 and prior versions may be found '''[[Getting Started with GEOS-Chem|HERE]]'''. |
− | <td width="50%" valign="top">
| + | |
− | * [[Frequently asked questions about GEOS-Chem]]
| + | |
− | * [[Minimum system requirements for GEOS-Chem]]
| + | |
− | * [[GEOS-Chem supported platforms and compilers]]
| + | |
− | * [[Downloading GEOS-Chem source code and data]]
| + | |
− | * [[Creating GEOS-Chem run directories]]
| + | |
− | * [[GEOS-Chem programming resources]] (e.g. tutorials, user guides, etc.)
| + | |
− | * [http://acmg.seas.harvard.edu/geos/doc/man/appendix_7.html GEOS-Chem Programming Style Guide]
| + | |
− | </td>
| + | |
| | | |
− | <!-- General Technical Information: Links -->
| + | === General information about GEOS-Chem === |
− | <td width="50%" valign="top">
| + | |
− | * [[Initial conditions for GEOS-Chem]]
| + | |
− | * [[Centralized chemistry time step]]
| + | |
− | * [[GEOS-Chem coding and debugging#GEOS-Chem debugging tips|Tips on how to debug GEOS-Chem effectively]]
| + | |
− | * [[Reporting GEOS-Chem bugs]]
| + | |
− | * [[Debugging with the GEOS-Chem unit tester]]
| + | |
− | * [[Parallelizing GEOS-Chem]] with the OpenMP directives
| + | |
− | * [[Common GEOS-Chem error messages]]
| + | |
− | * [[Adding tracers to GEOS-Chem|Adding advected tracers and chemical species to GEOS-Chem]]
| + | |
− | * [[Adding Passive Tracers|Adding passive (CO-like) tracers to GEOS-Chem]]
| + | |
− | </td>
| + | |
| | | |
− | </tr>
| + | The table below lists where you can find general information about GEOS-Chem. |
− | </table>
| + | |
| | | |
− | <!-- ======================================================== -->
| + | {| border=1 cellpadding=5 cellspacing=0 |
− | <!-- ===== CODE DEVELOPER'S FORUMS: TITLE ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
− | <p> </p>
| + | |
− | <table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center">
| + | |
| | | |
− | <tr bgcolor="#00AAAA">
| + | |-valign="top" |
− | <th colspan="2" height="50" valign="middle"><p><font color="#FFFFFF" size="+2">GEOS–Chem Code Developers' Forums</font></p></th>
| + | !width="200px" bgcolor="#CCCCCC"|Item |
− | </tr>
| + | !width="360px" bgcolor="#CCCCCC"|Link |
| + | !width="365px" bgcolor="#CCCCCC"|Description |
| | | |
− | <!-- ======================================================== -->
| + | |-valign="top" |
− | <!-- ===== CODE DEVELOPER'S FORUMS : FIRST ROW ===== -->
| + | |'''GEOS-Chem website''' |
− | <!-- ======================================================== -->
| + | |[http://www.geos-chem.org geos-chem.org] |
− | <tr bgcolor="#cccccc">
| + | |Website that links to GEOS-Chem information and resources |
− | <th width="50%"scope="col"><big>Coding</big></th>
| + | |
− | <th width="50%"scope="col"><big>Diagnostics</big></th>
| + | |
− | </tr>
| + | |
| | | |
− | <tr>
| + | |-valign="top" |
| + | |'''Welcome Letter''' |
| + | |[http://geos-chem.org/welcome.html geos-chem.org/welcome.html] |
| + | |A welcome letter for new users of GEOS-Chem |
| | | |
− | <!-- Coding: Links -->
| + | |-valign="top" |
− | <td width="50%" valign="top">
| + | |'''GEOS-Chem Overview''' |
− | * [[GEOS-Chem versions under development]]
| + | |[[GEOS-Chem overview]] (wiki page) |
− | * [[Bugs and fixes|List of GEOS-Chem bugs and in which version they were resolved]]
| + | |A page with linking to many GEOS-Chem topics. |
− | * [[Currently unresolved issues in GEOS-Chem]]
| + | |
− | * [[Common GEOS-Chem error messages]]
| + | |
− | * [[Known issues caused by compiler bugs|Known GEOS-Chem issues caused by compiler bugs]]
| + | |
− | * [[GEOS-Chem performance]]
| + | |
− | * [[Machine issues and portability]]
| + | |
− | * [[Passing array arguments efficiently in GEOS-Chem]]
| + | |
− | * [[Floating point math issues]]
| + | |
− | * [[Version control with Git]]
| + | |
− | </td>
| + | |
| | | |
− | <!-- Diagnostics: Links -->
| + | |-valign="top" |
− | <td width="50%" valign="top">
| + | |'''GEOS-Chem Narrative''' |
− | * [http://acmg.seas.harvard.edu/geos/doc/man/appendix_5.html Overview of diagnostics characteristics]
| + | |[http://geos-chem.org/narrative.html geos-chem.org/narrative.html] |
− | * [[Diagnostic time step]]
| + | |A narrative descrption of GEOS-Chem that you can include in scientific papers (plus instructions for citing GEOS-Chem) |
− | * [[Mass Flux (ND24/25/26)]]
| + | |
− | * [[Additional diagnostics]]
| + | |
− | </td>
| + | |
| | | |
− | </tr>
| + | |-valign="top" |
| + | |'''GEOS-Chem New Developments''' |
| + | |[http://geos-chem.org/new-developments.html geos-chem.org/new-developments.html] |
| + | |A list of significant GEOS-Chem updates and the developers who worked on them |
| | | |
− | <!-- ======================================================== -->
| + | |-valign="top" |
− | <!-- ===== CODE DEVELOPER'S FORUMS : SECOND ROW ===== -->
| + | |'''GEOS-Chem Steering Committee (GCSC)''' |
− | <!-- ======================================================== -->
| + | |[http://geos-chem.org/steering-committee.html geos-chem.org/steering-committee.html] |
| + | |A listing of current GCSC members and minutes from GCSC meetings |
| | | |
− | <!-- Header title -->
| + | |-valign="top" |
− | <tr bgcolor="#cccccc">
| + | |'''GEOS-Chem Working Groups''' |
− | <th width="50%"scope="col"><big>Emissions</big></th>
| + | |[http://geos-chem.org/working-groups geos-chem.org/working-groups.html] |
− | <th width="50%"scope="col"><big>Chemistry</big></th>
| + | |A listing of GEOS-Chem Working Groups and Working Group Co-Chairs |
− | </tr>
| + | |
| | | |
− | <tr>
| + | |-valign="top" |
| + | |'''GEOS-Chem Versions''' |
| + | |[[GEOS-Chem versions]] (wiki page) |
| + | |A listing of GEOS-Chem versions (with links for more information) |
| | | |
− | <!-- Emissions: Links -->
| + | |-valign="top" |
− | <td width="50%" valign="top">
| + | |'''GEOS-Chem Species List''' |
− | * [[HEMCO|HEMCO emissions component]]
| + | |[https://geos-chem.readthedocs.io/en/latest/geos-chem-shared-docs/supplemental-guides/species-guide.html View GEOS-Chem Species properties] (ReadTheDocs page) |
− | * [[HEMCO data directories]]
| + | |A listing of the species used in the GEOS-Chem chemistry mechanisms |
− | * [[Aerosol emissions]]
| + | |
− | * [[Aircraft emissions]]
| + | |
− | * [[Anthropogenic emissions]]
| + | |
− | * [[Scale factors for anthropogenic emissions]]
| + | |
− | * [[Biofuel emissions]]
| + | |
− | * [[Biogenic emissions]]
| + | |
− | * [[Biomass burning emissions]]
| + | |
− | * [[Lightning NOx emissions]]
| + | |
− | * [[Ship emissions]]
| + | |
− | * [[Soil NOx emissions]]
| + | |
− | * [[Volcanic SO2 emissions from Aerocom|Volcanic emissions]]
| + | |
− | * [[Historical and Future Emissions|Historical and future emissions]]
| + | |
− | </td>
| + | |
| | | |
− | <!-- Chemistry Links -->
| + | |-valign="top" |
− | <td width="50%" valign="top">
| + | |'''GEOS-Chem Guides''' |
− | * [[GEOS-Chem chemistry mechanisms]]
| + | |[[GEOS-Chem_overview#GEOS-Chem_Guides|GEOS-Chem Guides (wiki page)]] |
− | * [[GEOS-Chem chemistry mechanisms#Stratospheric chemistry|Stratopsheric chemistry options]]
| + | |List of several user guides explaining topics in-depth |
− | * [[GEOS-Chem chemistry mechanisms#Specialty simulations|Specialty simulations (aka "offline simulations")]]
| + | |
− | * Other resources
| + | |
− | ** [[Chemistry Issues]]
| + | |
− | ** [[Process Analysis Diagnostics]]
| + | |
− | ** [[Photolysis mechanism|Photolysis mechanisms used in GEOS-Chem]]
| + | |
− | ** [[DSMACC chemical box model]]
| + | |
− | ** [[Isoprene|List of recent papers about isoprene]]
| + | |
− | ** [[Linking GEOS-Chem to CMAQ]]
| + | |
− | ** [[Coupling GEOS-Chem with RRTMG]]
| + | |
− | *[[GEOS-Chem species database]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
| + | |
− | *[[Physical properties of GEOS-Chem species]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
| + | |
− | *[[Species_indexing_in_GEOS-Chem|Species and tracer indexing in GEOS-Chem]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
| + | |
− | </tr>
| + | |
| | | |
− | <!-- ======================================================== -->
| + | |-valign="top" |
− | <!-- ===== CODE DEVELOPER'S FORUMS : THIRD ROW ===== -->
| + | |'''Requesting Support''' |
− | <!-- ======================================================== -->
| + | |[https://geos-chem.readthedocs.io/en/latest/help-and-reference/SUPPORT.html GEOS-Chem support guidelines] |
| + | |ReadTheDocs page with instructions for creating GEOS-Chem support requests using the Github issue trackers |
| | | |
− | <!-- Header title -->
| + | |-valign="top" |
− | <tr bgcolor="#cccccc">
| + | |'''Submitting code or data''' |
− | <th width="50%"scope="col"><big>Dynamics</big></th>
| + | |[https://geos-chem.readthedocs.io/en/latest/help-and-reference/CONTRIBUTING.html GEOS-Chem contributing guidelines] |
− | <th width="50%"scope="col"><big>Deposition</big></th>
| + | |ReadTheDocs page with instructions for submitting new source code or data updates to be included into GEOS-Chem. |
− | </tr>
| + | |
| | | |
− | <tr>
| + | |} |
− | | + | |
− | <!-- Dynamics: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[Advection scheme TPCORE]]
| + | |
− | * [[Boundary layer mixing]]
| + | |
− | * [[Cloud convection]]
| + | |
− | * [[Dynamic tropopause]]
| + | |
− | </td>
| + | |
− | | + | |
− | <!-- Deposition: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[Dry deposition]]
| + | |
− | **[[Leaf area indices in GEOS-Chem]]
| + | |
− | * [[Wet deposition]]
| + | |
− | </td>
| + | |
− | | + | |
− | </tr>
| + | |
− | | + | |
− | <!-- ======================================================== -->
| + | |
− | <!-- ===== CODE DEVELOPER'S FORUMS : FOURTH ROW ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
− | | + | |
− | <!-- Header title -->
| + | |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>Aerosols</big></th>
| + | |
− | <th width="50%"scope="col"><big>Met Fields</big></th>
| + | |
− | </tr>
| + | |
− | | + | |
− | <tr>
| + | |
− | | + | |
− | <!-- Aerosols: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[Aerosols overview: projects and developments|Aerosols working group]]
| + | |
− | * [[Aerosol-only simulation]]
| + | |
− | * [[Aerosol optical properties]]
| + | |
− | * [[Aerosol thermodynamical equilibrium]]
| + | |
− | * [[Carbonaceous aerosols]]
| + | |
− | * [[Mineral dust aerosols]]
| + | |
− | * [[Secondary organic aerosols]]
| + | |
− | * [[Sea salt aerosols]]
| + | |
− | * [[Sulfate aerosols]]
| + | |
− | * Aerosol Microphysics
| + | |
− | ** [[APM aerosol microphysics|APM]]
| + | |
− | ** [[TOMAS aerosol microphysics|TOMAS]]
| + | |
− | </td>
| + | |
− | | + | |
− | <!-- Met Fields: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[GCAP]]
| + | |
− | ** [[List of GCAP met fields|List of GCAP met fields used by GEOS-Chem]]
| + | |
− | * [[Overview of GMAO met data products]]
| + | |
− | * [[Version history of GMAO met data products]]
| + | |
− | * [[GMAO GEOS-4]]
| + | |
− | ** [[List of GEOS-4 met fields|List of GEOS-4 met fields used by GEOS-Chem]]
| + | |
− | * [[GEOS-5|GMAO GEOS-5.2.0]]
| + | |
− | ** [[List of GEOS-5 met fields|List of GEOS-5.2.0 met fields used by GEOS-Chem]]
| + | |
− | ** [[GEOS-5 issues|Issues with GEOS-5.2.0 met data]]
| + | |
− | * [[MERRA|GMAO MERRA "reanalysis"]]
| + | |
− | ** [[List of MERRA met fields|List of MERRA met fields used by GEOS-Chem]]
| + | |
− | ** [[MERRA implementation details|Implementing MERRA into GEOS-Chem]]
| + | |
− | * [[GEOS-FP|GMAO GEOS-FP]]
| + | |
− | ** [[List of GEOS-FP met fields|List of GEOS-FP met fields used by GEOS-Chem]]
| + | |
− | ** [[GEOS-FP implementation details|Implementing GEOS-FP into GEOS-Chem]]
| + | |
− | * [[MERRA-2|GMAO MERRA-2]]
| + | |
− | ** [[List of MERRA-2 met fields|List of MERRA-2 met fields used by GEOS-Chem]]
| + | |
− | ** [[MERRA-2 implementation details|Implementing MERRA-2 into GEOS-Chem]]
| + | |
− | * [[Notes regarding GEOS vertical grids]]
| + | |
− | * [[Available met data for nested grid simulations]]
| + | |
− | * [[List of reprocessed met fields]]
| + | |
− | </td>
| + | |
− | | + | |
− | </tr>
| + | |
− | | + | |
− | <!-- ======================================================== -->
| + | |
− | <!-- ===== CODE DEVELOPER'S FORUMS : FIFTH ROW ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>Nested Grid Simulations</big></th>
| + | |
− | <th width="50%"scope="col"><big>Earth System Model Framework</big></th>
| + | |
− | </tr>
| + | |
− | | + | |
− | <tr>
| + | |
− | | + | |
− | <!-- Nested Grid Simulations: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[GEOS-Chem nested grid simulations]]
| + | |
− | * [[Setting up GEOS-Chem nested grid simulations]]
| + | |
− | * [[Available met data for nested grid simulations]]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/wiki_docs/nested_grids/geos_data_downloads.pdf Protocol for nested-grid data downloads]
| + | |
− | * [[Steps to setup new nested domains]]
| + | |
− | * [[GEOS-Chem nested model publications]]
| + | |
− | </td>
| + | |
− | | + | |
− | <!-- Libraries -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[Installing ESMF and other required libraries]]
| + | |
− | * [[Code development with the Earth System Model Framework]]
| + | |
− | * [[Automatic documentation with protex|Generating automatic LaTeX documentation with protex]]
| + | |
− | ** [http://frodo.elon.edu/tutorial/tutorial/tutorial.html Web-based LaTeX tutorial]
| + | |
− | </td>
| + | |
− | | + | |
− | </tr>
| + | |
− | | + | |
− | <!-- ======================================================== -->
| + | |
− | <!-- ===== CODE DEVELOPER'S FORUMS : SIXTH ROW ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>Benchmarking and Evaluation</big></th>
| + | |
− | <th width="50%"scope="col"><big>Related Projects</big></th>
| + | |
− | </tr>
| + | |
− | | + | |
− | <tr>
| + | |
− | | + | |
− | <!-- Diagnostics: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_benchmark.html General info about GEOS-Chem benchmark simulations]
| + | |
− | * [http://acmg.seas.harvard.edu/geos/geos_1yr_plots.html List of GEOS-Chem 1-year benchmark simulations]
| + | |
− | * [[Mean OH lifetime in GEOS-Chem]]
| + | |
− | * [ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1yr_benchmarks/ FTP site with output from 1-year GEOS-Chem benchmark simulations]
| + | |
− | * [[GEOS-Chem participation in community intercomparisons]]
| + | |
− | * [[Satellite_Specifications_Table|Satellite Instrument Specifications Table]]
| + | |
− | </td>
| + | |
− | | + | |
− | <!-- Related Projects: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[Grid-independent GEOS-Chem]]
| + | |
− | * [[GEOS-Chem Adjoint]]
| + | |
− | * [[GEOS-Chem Near-Real-Time Simulations]]
| + | |
− | * [[FlexAOD]]
| + | |
− | </td>
| + | |
− | | + | |
− | </tr>
| + | |
− | </table>
| + | |
− | | + | |
− | <!-- ======================================================== -->
| + | |
− | <!-- ===== REFERENCE: TITLE ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
− | <p> </p>
| + | |
− | <table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center">
| + | |
− | | + | |
− | <tr bgcolor="#00AAAA">
| + | |
− | <th colspan="2" height="50" valign="middle"><p><font color="#FFFFFF" size="+2">Reference Section</font></p></th>
| + | |
− | </tr>
| + | |
− | | + | |
− | <!-- ======================================================== -->
| + | |
− | <!-- ===== REFERENCE: FIRST ROW ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>IDL</big></th>
| + | |
− | <th width="50%"scope="col"><big>GAMAP</big></th>
| + | |
− | </tr>
| + | |
− | | + | |
− | <tr>
| + | |
− | | + | |
− | <!-- IDL: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [http://www.exelisvis.com/ Exelis Visual Information Solutions (vendor)]
| + | |
− | * [http://www.exelisvis.com/docs/routines-1.html Online IDL Reference Manual @ Exelis website]
| + | |
− | * [http://idlastro.gsfc.nasa.gov/idl_html_help/Structures.html Structures in IDL]
| + | |
− | * [http://idlastro.gsfc.nasa.gov/idl_html_help/Pointers.html Pointers in IDL]
| + | |
− | * [http://idlastro.gsfc.nasa.gov/idl_html_help/Overview_of_Mathematics_in_IDL.html Overview of Mathematics in IDL]
| + | |
− | * [http://www.dfanning.com/ Coyote's Guide to IDL Programming (David Fanning's Web Site)] - Lots of tips on how to accomplish programming tasks
| + | |
− | * [http://www.mpimet.mpg.de/en/misc/software/idl IDL Page at Max Planck Institute for Meteorology]
| + | |
− | * [http://www.mpimet.mpg.de/en/misc/software/idl/doc/mgs_script.pdf Martin Schultz's IDL Tutorial (PDF Format)]
| + | |
− | * [http://idlastro.gsfc.nasa.gov/homepage.html IDL Astronomy User's Library]
| + | |
− | * [http://fermi.jhuapl.edu/s1r/idl/idl.html JHU/APL/S1R IDL routines page]
| + | |
− | * [http://cow.physics.wisc.edu/~craigm/idl/idl.html Craig Markwardt's IDL library]
| + | |
− | * [http://cimss.ssec.wisc.edu/~gumley/doc/idltips.pdf The Underground Guide to IDL by Liam Gumley (PDF)]
| + | |
− | * [[Reading binary files in IDL]]
| + | |
− | </td>
| + | |
− | | + | |
− | <!-- Diagnostics: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [http://acmg.seas.harvard.edu/gamap/ GAMAP web page]
| + | |
− | * [http://acmg.seas.harvard.edu/gamap/doc/ GAMAP on-line users' guide]
| + | |
− | * [[GAMAP bugs and fixes]]
| + | |
− | * [[GAMAP tips and tricks]]
| + | |
− | **[[General GAMAP usage]]
| + | |
− | **[[TVMAP cheat sheet]]
| + | |
− | **[[File I/O with GAMAP]]
| + | |
− | ***[http://acmg.seas.harvard.edu/gamap/doc/timeseries_brief_tutorial.pdf Working with timeseries output in GAMAP]
| + | |
− | **[[Color and graphics with GAMAP]]
| + | |
− | *** [http://acmg.seas.harvard.edu/geos/wiki_docs/gamap/gamap_color_table_file.pdf Loading Color Tables in GAMAP v2.12]
| + | |
− | *** [http://acmg.seas.harvard.edu/forum_files/cdh_ColorInIDL.pdf Working with color in IDL by Chris Holmes]
| + | |
− | **[[Regridding with GAMAP]]
| + | |
− | **[[Date and time computations with GAMAP]]
| + | |
− | **[[Text manipulation with GAMAP]]
| + | |
− | </td>
| + | |
− | | + | |
− | </tr>
| + | |
− | | + | |
− | <!-- ======================================================== -->
| + | |
− | <!-- ===== REFERENCE: SECOND ROW ===== -->
| + | |
− | <!-- ======================================================== -->
| + | |
− | | + | |
− | <!-- Header title -->
| + | |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>Fortran</big></th>
| + | |
− | <th width="50%"scope="col"><big>Perl</big></th>
| + | |
− | </tr>
| + | |
− | | + | |
− | <tr>
| + | |
− | | + | |
− | <!-- Fortran: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[Intel Fortran Compiler]]
| + | |
− | ** [http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v11.pdf Version 11.1]
| + | |
− | ** [http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v12.pdf Version 12.1]
| + | |
− | ** [https://nf.nci.org.au/facilities/software/intel-ct/13.2.146/Documentation/en_US/compiler_f/main_for/index.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747 Version XE 13.1]
| + | |
− | ** [https://software.intel.com/en-us/compiler_15.0_ug_f Version 15.0]
| + | |
− | * [[PGI Fortran compiler]]
| + | |
− | **[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgiug.pdf User Guide]
| + | |
− | **[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgifortref.pdf Reference Guide]
| + | |
− | * [[GNU Fortran compiler]]
| + | |
− | * [http://www-01.ibm.com/software/awdtools/fortran/xlfortran/ IBM XL Fortran]
| + | |
− | * [http://docs.sun.com/app/docs/doc/819-3686 Sun Studio 11 Fortran Compiler]
| + | |
− | * [http://www.liv.ac.uk/HPC/HTMLF90Course/HTMLF90CourseSlides.html Modular Programming w/ Fortran 90 (U. Liverpool)]
| + | |
− | * [http://www.liv.ac.uk/HPC/F90page.html Other University of Liverpool F90 tutorials and courses]
| + | |
− | * [http://sunsite.unc.edu/pub/languages/fortran/index.html User Notes on FORTRAN Programming]
| + | |
− | * [http://www.nsc.liu.se/~boein/f77to90/f77to90.html Fortran 90 for the FORTRAN 77 Programmer]
| + | |
− | * [http://www.kcl.ac.uk/kis/support/cc/fortran/f90home.html#1.0 Fortran 90 Home Page at King's College, London]
| + | |
− | * [http://www.cs.rpi.edu/~szymansk/oof90.html Object Oriented Fortran 90 Programming]
| + | |
− | </td>
| + | |
− | | + | |
− | <!-- Perl: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [http://www.perl.com Perl.com]
| + | |
− | * [http://www.perl.org/books/beginning-perl/ ''Beginning Perl'' by Simon Cozens (free online book)]
| + | |
− | * [http://backpan.perl.org/authors/id/Q/QU/QUONG/perlin20.html Perl in 20 pages]
| + | |
− | * [http://www.enginsite.com/Library-Robert%27s-Perl-Tutorial.htm MediaWiki User's Guide]
| + | |
− | * [http://www.cpan.org/ Comprehensive Perl Archive Network (CPAN.org)]
| + | |
− | </td>
| + | |
− | | + | |
− | </tr>
| + | |
− | | + | |
− | <!-- Header title -->
| + | |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>R</big></th>
| + | |
− | <th width="50%"scope="col"><big>Python</big></th>
| + | |
− | </tr>
| + | |
− | | + | |
− | <tr>
| + | |
− | | + | |
− | <!-- R: links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | *[http://www.r-project.org/ The R project for statistical computing]
| + | |
− | *[http://journal.r-project.org/ The R journal]
| + | |
− | *[http://www.mayin.org/ajayshah/KB/R/index.html R by example]
| + | |
− | *[[Using R to analyze GEOS-Chem data]]
| + | |
− | </td>
| + | |
− | | + | |
− | <!-- Python: links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | *[[Python code for GEOS-Chem]]
| + | |
− | *[http://www.python.org Python.org]: Main site for all things Python
| + | |
− | *[http://docs.python.org/2/tutorial/ Python.org Tutorial]
| + | |
− | *[http://wiki.python.org/moin/BeginnersGuide/Programmers PythonWiki.org: List of tutorials and resources]
| + | |
− | *[https://developers.google.com/edu/python/ Google's Python tutorial]
| + | |
− | </td>
| + | |
− | | + | |
− | </tr>
| + | |
− | | + | |
− | <!-- Header title -->
| + | |
− | <tr bgcolor="#cccccc">
| + | |
− | <th width="50%"scope="col"><big>NCAR Command Language (NCL)</big></th>
| + | |
− | <th width="50%"scope="col"><big>Wiki Documentation</big></th>
| + | |
− | </tr>
| + | |
− | | + | |
− | <tr>
| + | |
− | | + | |
− | <!-- Wiki Documentation: Links -->
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [http://www.ncl.ucar.edu/ NCL main page]
| + | |
− | * [http://www.ncl.ucar.edu/Applications/ NCL applications]
| + | |
− | * [http://www.ncl.ucar.edu/Document/ NCL documentation]
| + | |
− | * [http://www.ncl.ucar.edu/Support/email_lists.shtml Sign up for NCL-Talk email list]
| + | |
− | * [[NCL_tools_for_GEOS-Chem|NCL4GC: NCL tools for GEOS-Chem]]
| + | |
− | </td>
| + | |
− | <td width="50%" valign="top">
| + | |
− | * [[Sandbox]]
| + | |
− | * [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
| + | |
− | * [http://meta.wikimedia.org/wiki/Help:Contents MediaWiki User's Guide]
| + | |
− | * [http://meta.wikimedia.org/wiki/Help:Wikitext Examples of Wiki markup text]
| + | |
− | * [http://meta.wikimedia.org/wiki/Help:Reference_card One-page editing reference card]
| + | |
− | * [http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration Settings list]
| + | |
− | * [http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
| + | |
− | </td>
| + | |
− | | + | |
− | </tr>
| + | |
− | | + | |
− | </table>
| + | |
The table below lists where you can find general information about GEOS-Chem.