Difference between revisions of "GEOS-Chem v11-02 benchmark history"
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== 1-month benchmarks == | == 1-month benchmarks == | ||
+ | |||
+ | === v11-02b === | ||
+ | |||
+ | Here is the assessment form for 1-month benchmark simulation '''[[GEOS-Chem_v11-02#v11-02b|v11-02b]]'''. | ||
+ | |||
+ | {| border=1 cellspacing=0 cellpadding=5 | ||
+ | |-bgcolor="#CCCCCC" | ||
+ | !width="325px"|Description | ||
+ | ! | ||
+ | |- | ||
+ | |New features added into GEOS-Chem | ||
+ | | | ||
+ | {| border=1 cellspacing=0 cellpadding=5 | ||
+ | |||
+ | |- | ||
+ | !colspan="2" bgcolor="#CCFFFF"|Features '''not''' affecting the full-chemistry simulation: | ||
+ | |||
+ | |- | ||
+ | !width="500px" bgcolor="#CCCCCC"|Feature | ||
+ | !width="200px" bgcolor="#CCCCCC"|Submitted by | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[GEOS-Chem HP|Source code updates for compatibility with GCHP v1.0.0]] | ||
+ | |[[GEOS-Chem_HP#GCHP_Development_Team|GCHP development team]] | ||
+ | |||
+ | |-valign="top" | ||
+ | |Bug fixes for diagnostics: | ||
+ | *[[GEOS-Chem_v11-02#ND26_vertical_flux_diagnostic_does_not_yield_mass_balance_in_advection|Use FZ array to compute ND26 vertical flux diagnostic]] | ||
+ | *[[GEOS-Chem_v11-02#ND40_planeflight_diagnostic_not_always_written_out_when_turned_on|Always write ND40 planeflight diagnostic when enabled]] | ||
+ | |<br>Ilya Stanevic (Toronto)<br>Lee Murray (Rochester) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Write initial and final Ox mass to file when using the tagged O3 simulation | ||
+ | |Bob Yantosca ([[GCST]]) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Convert CO2 emissions units using dry pressure used in advection | ||
+ | |Meemong Lee (JPL) | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[QFED_biomass_burning_emissions|Add QFED emissions for 2014-2016]] | ||
+ | |Christoph Keller (NASA GMAO) | ||
+ | |||
+ | |} | ||
+ | |||
+ | |- | ||
+ | |Version, resolution, met fields used: | ||
+ | |v11-02, GEOS-FP (72L), 4x5, July 2013 | ||
+ | |- | ||
+ | |1-month benchmark finished on: | ||
+ | |TBD | ||
+ | |- | ||
+ | |Performance statistics: | ||
+ | | | ||
+ | *Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50 GHz) | ||
+ | *Wall time: TBD | ||
+ | *[[Scalability|CPU time / wall time]]: TBD | ||
+ | *% of ideal performance: TBD% | ||
+ | *Memory: TBD GB | ||
+ | |- | ||
+ | |Compared to previous benchmark: | ||
+ | |[[GEOS-Chem_v11-02_benchmark_history#v11-02a|v11-02a]] | ||
+ | |- | ||
+ | |This update will impact:<br>(select all that apply with '''boldface''') | ||
+ | |Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): | ||
+ | |- | ||
+ | |[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | ||
+ | |http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02b/v11-02b.results.html | ||
+ | |- | ||
+ | |Plots may be viewed at: | ||
+ | |http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02b/ | ||
+ | |-bgcolor="#cccccc" | ||
+ | !Metrics | ||
+ | ! | ||
+ | |- | ||
+ | |Global mean OH (from log file): | ||
+ | |TBD x 10<sup>5</sup> molec/cm<sup>3</sup> | ||
+ | |- | ||
+ | |Methyl chloroform lifetime: | ||
+ | |TBD years | ||
+ | |- | ||
+ | |Did either of these change by more than 5%? | ||
+ | | | ||
+ | |- | ||
+ | |At the SURFACE, list all species that changed by 10% or more: | ||
+ | | | ||
+ | |- | ||
+ | |Comments on SURFACE differences: | ||
+ | | | ||
+ | |- | ||
+ | |At 500 hPa, list all species that changed by 10% or more: | ||
+ | | | ||
+ | |- | ||
+ | |Comments on 500 hPa differences: | ||
+ | |See comments on surface differences. | ||
+ | |- | ||
+ | |In the ZONAL MEAN differences, list all species that changed by 10% or more: | ||
+ | | | ||
+ | |- | ||
+ | |Comments on ZONAL MEAN differences: | ||
+ | |See comments on surface differences. | ||
+ | |- | ||
+ | |In the EMISSION RATIO maps, list all species that changed by 10% or more: | ||
+ | | | ||
+ | |- | ||
+ | |Comments on EMISSION RATIO differences: | ||
+ | | | ||
+ | |- | ||
+ | |Additional or summary comments: | ||
+ | | | ||
+ | |-bgcolor="#cccccc" | ||
+ | !Approval | ||
+ | ! | ||
+ | |- | ||
+ | |Requires further investigation: | ||
+ | |TBD | ||
+ | |- | ||
+ | |Approved by: | ||
+ | |TBD | ||
+ | |- | ||
+ | |Date of approval: | ||
+ | |TBD | ||
+ | |} | ||
+ | |||
+ | --[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 14:34, 16 May 2017 (UTC) | ||
=== v11-02a === | === v11-02a === | ||
Line 338: | Line 463: | ||
|- | |- | ||
|Additional or summary comments: | |Additional or summary comments: | ||
− | |''' | + | |'''Removal of biomass burning updates''' |
− | After the 1-month benchmark for v11-02a, the GCSC decided we should remove the code updates for vertically distributed biomass burning emissions ([[PAN#Injection_height_of_biomass_burning_emissions|see this wiki post]] for more details). An unofficial 1-month benchmark was run for v11-02a to evaluate the model changes with the biomass burning injection height updates removed. The plots for that run may be viewed at: | + | After the 1-month benchmark for v11-02a, the GCSC decided we should remove the code updates for vertically distributed biomass burning emissions (see [[PAN#Injection_height_of_biomass_burning_emissions|this wiki post]] for more details). In addition, after the 1-year benchmark [#v11-02a-Run0|v11-02a-Run0]], the GCSC asked that we comment out the partitioning of NOx biomass burning emissions directly to PAN and HNO3 (see [[PAN#Partitioning_of_NO_biomass_burning_emissions|this wiki post]] for more details). An unofficial 1-month benchmark was run for v11-02a to evaluate the model changes with the biomass burning injection height updates removed. The plots for that run may be viewed at: |
:http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02a_final/ | :http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02a_final/ | ||
Line 364: | Line 489: | ||
|24 Apr 2017 | |24 Apr 2017 | ||
|} | |} | ||
+ | |||
--[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 19:27, 20 April 2017 (UTC) | --[[User:Melissa Payer|Melissa Sulprizio]] ([[User talk:Melissa Payer|talk]]) 19:27, 20 April 2017 (UTC) | ||
Revision as of 14:34, 16 May 2017
On this page we have posted complete information about all benchmark simulations (both 1-month and 1-year) for GEOS-Chem v11-02.
Contents
1-year full-chemistry benchmarks
v11-02a-Run0
Three GEOS-Chem model versions were compared to each other:
The output plots for Run0 may be downloaded from:
ftp ftp.as.harvard.edu cd gcgrid/geos-chem/1yr_benchmarks/v11-02/v11-02a/Run0/output mget *
You may also view the PDF files online by pointing your browser to
http://ftp.as.harvard.edu/gcgrid/geos-chem/1yr_benchmarks/v11-02/v11-02a/Run0/output/
Please also view the following pages comparing this version to past 1-year benchmarks:
--Melissa Sulprizio (talk) 18:14, 10 May 2017 (UTC)
1-month benchmarks
v11-02b
Here is the assessment form for 1-month benchmark simulation v11-02b.
Description | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
New features added into GEOS-Chem |
| ||||||||||||||
Version, resolution, met fields used: | v11-02, GEOS-FP (72L), 4x5, July 2013 | ||||||||||||||
1-month benchmark finished on: | TBD | ||||||||||||||
Performance statistics: |
| ||||||||||||||
Compared to previous benchmark: | v11-02a | ||||||||||||||
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): | ||||||||||||||
Unit test results may be viewed at: | http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02b/v11-02b.results.html | ||||||||||||||
Plots may be viewed at: | http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02b/ | ||||||||||||||
Metrics | |||||||||||||||
Global mean OH (from log file): | TBD x 105 molec/cm3 | ||||||||||||||
Methyl chloroform lifetime: | TBD years | ||||||||||||||
Did either of these change by more than 5%? | |||||||||||||||
At the SURFACE, list all species that changed by 10% or more: | |||||||||||||||
Comments on SURFACE differences: | |||||||||||||||
At 500 hPa, list all species that changed by 10% or more: | |||||||||||||||
Comments on 500 hPa differences: | See comments on surface differences. | ||||||||||||||
In the ZONAL MEAN differences, list all species that changed by 10% or more: | |||||||||||||||
Comments on ZONAL MEAN differences: | See comments on surface differences. | ||||||||||||||
In the EMISSION RATIO maps, list all species that changed by 10% or more: | |||||||||||||||
Comments on EMISSION RATIO differences: | |||||||||||||||
Additional or summary comments: | |||||||||||||||
Approval | |||||||||||||||
Requires further investigation: | TBD | ||||||||||||||
Approved by: | TBD | ||||||||||||||
Date of approval: | TBD |
--Melissa Sulprizio (talk) 14:34, 16 May 2017 (UTC)
v11-02a
Here is the assessment form for 1-month benchmark simulation v11-02a.
Description | |||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
New features added into GEOS-Chem |
| ||||||||||||||||||||||||||||||||||||||||||||||
Version, resolution, met fields used: | v11-02, GEOS-FP (72L), 4x5, July 2013 | ||||||||||||||||||||||||||||||||||||||||||||||
1-month benchmark finished on: | Sun Apr 16 01:37:36 EDT 2017 | ||||||||||||||||||||||||||||||||||||||||||||||
Performance statistics: |
| ||||||||||||||||||||||||||||||||||||||||||||||
Compared to previous benchmark: | v11-01 public release | ||||||||||||||||||||||||||||||||||||||||||||||
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): | ||||||||||||||||||||||||||||||||||||||||||||||
Unit test results may be viewed at: | http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02a/v11-02a.results.html | ||||||||||||||||||||||||||||||||||||||||||||||
Plots may be viewed at: | http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v11-02/v11-02a/ | ||||||||||||||||||||||||||||||||||||||||||||||
Metrics | |||||||||||||||||||||||||||||||||||||||||||||||
Global mean OH (from log file): | 12.3128108012973 x 105 molec/cm3 | ||||||||||||||||||||||||||||||||||||||||||||||
Methyl chloroform lifetime: | 5.1159 years | ||||||||||||||||||||||||||||||||||||||||||||||
Did either of these change by more than 5%? | No. Mean OH changed by -2.57% and MCF lifetime changed by 2.94%. These changes were primarily caused by two updates:
| ||||||||||||||||||||||||||||||||||||||||||||||
At the SURFACE, list all species that changed by 10% or more: | NO, O3, PAN, CO, ALK4, ISOP, HNO3, H2O2, ACET, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, R4N2, PRPE, C3H8, CH2O, C2H6, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, MSA, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, CHBr3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG2, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASO3G3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2 | ||||||||||||||||||||||||||||||||||||||||||||||
Comments on SURFACE differences: |
Below we summarize the notable changes caused by specific updates. Update chemistry rate constants based on JPL Publication 15-10
Monthly mean NEI2011 emissions
Bug fixes in the GEOS-Chem sulfate module:
Fix bug in dry deposition aerodynamic resistance
The following updates impacted species concentrations slightly, but the changes did not amount to >10%. | ||||||||||||||||||||||||||||||||||||||||||||||
At 500 hPa, list all species that changed by 10% or more: | NO, PAN, CO, ALK4, ISOP, HNO3, H2O2, ACET, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, R4N2, PRPE, C3H8, CH2O, C2H6, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, MSA, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, CHBr3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG2, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASO3G3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2 | ||||||||||||||||||||||||||||||||||||||||||||||
Comments on 500 hPa differences: | See comments on surface differences. | ||||||||||||||||||||||||||||||||||||||||||||||
In the ZONAL MEAN differences, list all species that changed by 10% or more: | NO, PAN, ALK4, ISOP, HNO3, H2O2, MEK, ALD2, RCHO, MVK, MACR, PMN, PPN, PRPE, C3H8, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NH4, NIT, NITs, BCPI, OCPI, BCPO, OCPO, Br2, Br, BrO, HOBr, HBr, BrNO2, CHBr3, MPN, ISOPND, ISOPNB, MOBA, HAC, GLYC, MVKN, MACRN, RIP, IEPOX, MAP, NO2, NO3, HNO2, BrCl, Cl, ClO, HOCl, ClNO3, ClOO, OClO, Cl2, Cl2O2, MTPA, LIMO, MTPO, TSOG1, TSOG2, TSOG3, TSOG0, TSOA1, TSOA2, TSOA3, TSOA0, ISOG1, ISOG2, ISOG3, ISOA1, ISOA2, ISOA3, BENZ, TOLU, XYLE, ASOG1, ASOG2, ASOG3, ASOAN, ASOA1, ASOA2, ASOA3, OH, HO2 | ||||||||||||||||||||||||||||||||||||||||||||||
Comments on ZONAL MEAN differences: | See comments on surface differences. | ||||||||||||||||||||||||||||||||||||||||||||||
In the EMISSION RATIO maps, list all species that changed by 10% or more: |
| ||||||||||||||||||||||||||||||||||||||||||||||
Comments on EMISSION RATIO differences: |
| ||||||||||||||||||||||||||||||||||||||||||||||
Additional or summary comments: | Removal of biomass burning updates
After the 1-month benchmark for v11-02a, the GCSC decided we should remove the code updates for vertically distributed biomass burning emissions (see this wiki post for more details). In addition, after the 1-year benchmark [#v11-02a-Run0|v11-02a-Run0]], the GCSC asked that we comment out the partitioning of NOx biomass burning emissions directly to PAN and HNO3 (see this wiki post for more details). An unofficial 1-month benchmark was run for v11-02a to evaluate the model changes with the biomass burning injection height updates removed. The plots for that run may be viewed at: Results from our v11-02a benchmark using the GNU Fortran Compiler In order to evaluate the performance of GEOS-Chem using the the free and open source GNU Fortran compiler, we performed an additional 1-month benchmark for v11-02a. For this additional benchamark, we used GNU Fortran v6.2.0 to compile GEOS-Chem instead of our usual Intel Fortran Compiler version 11.1.069. For more details, see this post on our GNU Fortran compiler wiki page. Summary: The benchmark using GNU Fortran yielded essentially identical results to the benchmark using Intel Fortran. This is very encouraging, as it will allow GEOS-Chem development to take place on computational platforms that do not have proprietary compilers (such as Intel Fortran or PGI Fortran), which can be prohibitively expensive to purchase. | ||||||||||||||||||||||||||||||||||||||||||||||
Approval | |||||||||||||||||||||||||||||||||||||||||||||||
Requires further investigation: | Yes, a 1-year benchmark simulation | ||||||||||||||||||||||||||||||||||||||||||||||
Approved by: | Emily Fischer, Prasad Kasibhatla, Brian Boys, Daniel Jacob | ||||||||||||||||||||||||||||||||||||||||||||||
Date of approval: | 24 Apr 2017 |
--Melissa Sulprizio (talk) 19:27, 20 April 2017 (UTC)
1-year Rn-Pb-Be benchmarks
TBD