Sandbox

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feel free to experiment here

Collection list

EXPID:  OutputDir/GCHP
EXPDSC: GEOS-Chem_devel
CoresPerNode: 6
#===================================================================
# Declare collection names and toggle on/off
# by commenting out with a #
#===================================================================
COLLECTIONS: 'SpeciesConc',
             'Aerosols',
             'CloudConvFlux',
             'ConcAfterChem',
             'DryDep',
             'JValues',
             'JValuesLocalNoon',
             'LevelEdgeDiags',      
             'ProdLoss',
             'StateChm',     
             'StateMet',      
             'WetLossConv',
             'WetLossLS',

The SpeciesConc collection

A sample collection definition section is listed below. You may cut-and-paste this into your HISTORY.rc file and edit accordingly.

 SpeciesConc.template:       '%y4%m2%d2_%h2%n2z.nc4',
 SpeciesConc.format:         'CFIO',
 SpeciesConc.frequency:      010000
 SpeciesConc.duration:       010000
 SpeciesConc.mode:           'time-averaged'
 SpeciesConc.fields:         'SpeciesConc_?ADV?             ', 'GIGCchem',

Here follows a description of diagnostic quantities belonging to the SpeciesConc collection.

Diagnostic name Description Units Wildcards Simulations Bpch equiv. Notes
SpeciesConc_<spcname> Chemical species concentrations mol/mol dry air
  • ?ADV?
  • ?AER?
  • ?ALL?
  • ?DRY?
  • ?FIX?
  • ?GAS?
  • ?KPP?
  • ?PHO?
  • ?VAR?
  • ?WET?
all simulations

Aerosol diagnostics

#===================================================================
# Aerosol optical depth, surface area, number density, and hygroscopic growth
 Aerosols.template:          '%y4%m2%d2_%h2%n2z.nc4',
 Aerosols.format:            'CFIO',
 Aerosols.frequency:         010000
 Aerosols.duration:          010000
 Aerosols.mode:              'time-averaged'
 Aerosols.fields:            'AODDust                       ', 'GIGCchem',
                             'AODDustWL1_?DUSTBIN?          ', 'GIGCchem',
                             'AODHygWL1_?HYG?               ', 'GIGCchem',
                             'AODSOAfromAqIsopreneWL1       ', 'GIGCchem',
                             'AODStratLiquidAerWL1          ', 'GIGCchem',
                             'AODPolarStratCloudWL1         ', 'GIGCchem',
                             'AerHygroscopicGrowth_?HYG?    ', 'GIGCchem',
                             'AerNumDensityStratLiquid      ', 'GIGCchem',
                             'AerNumDensityStratParticulate ', 'GIGCchem',
                             'AerAqueousVolume              ', 'GIGCchem',
                             'AerSurfAreaDust               ', 'GIGCchem',
                             'AerSurfAreaHyg_?HYG?          ', 'GIGCchem',
                             'AerSurfAreaStratLiquid        ', 'GIGCchem',
                             'AerSurfAreaPolarStratCloud    ', 'GIGCchem',
                             'Chem_AeroAreaMDUST1           ', 'GIGCchem',
                             'Chem_AeroAreaMDUST2           ', 'GIGCchem',
                             'Chem_AeroAreaMDUST3'          ', 'GIGCchem',
                             'Chem_AeroAreaMDUST4           ', 'GIGCchem',
                             'Chem_AeroAreaMDUST5           ', 'GIGCchem',
                             'Chem_AeroAreaMDUST6           ', 'GIGCchem',
                             'Chem_AeroAreaMDUST7           ', 'GIGCchem',
                             'Chem_AeroAreaSULF             ', 'GIGCchem',
                             'Chem_AeroAreaBC               ', 'GIGCchem',
                             'Chem_AeroAreaOC               ', 'GIGCchem',
                             'Chem_AeroAreaSSA              ', 'GIGCchem',
                             'Chem_AeroAreaSSC              ', 'GIGCchem',
                             'Chem_AeroAreaBGSULF           ', 'GIGCchem',
                             'Chem_AeroAreaICEI             ', 'GIGCchem',
                             'Chem_AeroRadiMDUST1           ', 'GIGCchem',
                             'Chem_AeroRadiMDUST2           ', 'GIGCchem',
                             'Chem_AeroRadiMDUST3           ', 'GIGCchem',
                             'Chem_AeroRadiMDUST4           ', 'GIGCchem',
                             'Chem_AeroRadiMDUST5           ', 'GIGCchem',
                             'Chem_AeroRadiMDUST6           ', 'GIGCchem',
                             'Chem_AeroRadiMDUST7           ', 'GIGCchem',
                             'Chem_AeroRadiSULF             ', 'GIGCchem',
                             'Chem_AeroRadiBC               ', 'GIGCchem',
                             'Chem_AeroRadiOC               ', 'GIGCchem',
                             'Chem_AeroRadiSSA              ', 'GIGCchem',
                             'Chem_AeroRadiSSC              ', 'GIGCchem',
                             'Chem_AeroRadiBGSULF           ', 'GIGCchem',
                             'Chem_AeroRadiICEI             ', 'GIGCchem',
                             'Chem_WetAeroAreaMDUST1        ', 'GIGCchem',
                             'Chem_WetAeroAreaMDUST2        ', 'GIGCchem',
                             'Chem_WetAeroAreaMDUST3        ', 'GIGCchem',
                             'Chem_WetAeroAreaMDUST4        ', 'GIGCchem',
                             'Chem_WetAeroAreaMDUST5        ', 'GIGCchem',
                             'Chem_WetAeroAreaMDUST6        ', 'GIGCchem',
                             'Chem_WetAeroAreaMDUST7        ', 'GIGCchem',
                             'Chem_WetAeroAreaSULF          ', 'GIGCchem',
                             'Chem_WetAeroAreaBC            ', 'GIGCchem',
                             'Chem_WetAeroAreaOC            ', 'GIGCchem',
                             'Chem_WetAeroAreaSSA           ', 'GIGCchem',
                             'Chem_WetAeroAreaSSC           ', 'GIGCchem',
                             'Chem_WetAeroAreaBGSULF        ', 'GIGCchem',
                             'Chem_WetAeroAreaICEI          ', 'GIGCchem',
                             'Chem_WetAeroRadiMDUST1        ', 'GIGCchem',
                             'Chem_WetAeroRadiMDUST2        ', 'GIGCchem',
                             'Chem_WetAeroRadiMDUST3        ', 'GIGCchem',
                             'Chem_WetAeroRadiMDUST4        ', 'GIGCchem',
                             'Chem_WetAeroRadiMDUST5        ', 'GIGCchem',
                             'Chem_WetAeroRadiMDUST6        ', 'GIGCchem',
                             'Chem_WetAeroRadiMDUST7        ', 'GIGCchem',
                             'Chem_WetAeroRadiSULF          ', 'GIGCchem',
                             'Chem_WetAeroRadiBC            ', 'GIGCchem',
                             'Chem_WetAeroRadiOC            ', 'GIGCchem',
                             'Chem_WetAeroRadiSSA           ', 'GIGCchem',
                             'Chem_WetAeroRadiSSC           ', 'GIGCchem',
                             'Chem_WetAeroRadiBGSULF        ', 'GIGCchem',
                             'Chem_WetAeroRadiICEI          ', 'GIGCchem',
                             'Chem_StatePSC                 ', 'GIGCchem',
                             'Chem_KhetiSLAN2O5H2O          ', 'GIGCchem',
                             'Chem_KhetiSLAN2O5HCl          ', 'GIGCchem',
                             'Chem_KhetiSLAClNO3H2O         ', 'GIGCchem',
                             'Chem_KhetiSLAClNO3HCl         ', 'GIGCchem',
                             'Chem_KhetiSLAClNO3HBr         ', 'GIGCchem',
                             'Chem_KhetiSLABrNO3H2O         ', 'GIGCchem',
                             'Chem_KhetiSLABrNO3HCl         ', 'GIGCchem',
                             'Chem_KhetiSLAHOClHCl          ', 'GIGCchem',
                             'Chem_KhetiSLAHOClHBr          ', 'GIGCchem',
                             'Chem_KhetiSLAHOBrHCl          ', 'GIGCchem',
                             'Chem_KhetiSLAHOBrHBr          ', 'GIGCchem',
                             ::

Cloud convective flux

The CloudConvFlux collection

A sample collection definition section is listed below. You may cut-and-paste this into your HISTORY.rc file and edit accordingly.

 CloudConvFlux.template:     '%y4%m2%d2_%h2%n2z.nc4',
 CloudConvFlux.format:       'CFIO',
 CloudConvFlux.frequency:    010000
 CloudConvFlux.duration:     010000
 CloudConvFlux.mode:         'time-averaged'
 CloudConvFlux.fields:       'CloudConvFlux_?ADV?           ', 'GIGCchem',

Here follows a description of diagnostic quantities belonging to the SpeciesConc collection.

Diagnostic name Description Units Wildcards Simulations Bpch equiv. Notes
CloudConvFlux_<spcname> Mass change due to cloud convection kg/s
  • ?ADV?
  • ?DRY?
  • ?GAS?
  • ?WET?
  • all simulations
  • Will be replaced by new flux diagnostics in v11-03

Concentrations after chemistry

 # Concentrations after chemistry
 ConcAfterChem.template:     '%y4%m2%d2_%h2%n2z.nc4',
 ConcAfterChem.format:       'CFIO',
 ConcAfterChem.frequency:    010000
 ConcAfterChem.duration:     010000
 ConcAfterChem.mode:         'time-averaged'
 ConcAfterChem.fields:       'OHconcAfterChem               ', 'GIGCchem',  
                             'HO2concAfterChem              ', 'GIGCchem',  
                             'O1DconcAfterChem              ', 'GIGCchem',  
                             'O3PconcAfterChem              ', 'GIGCchem',  

Dry deposition diagnostics

  1. Dry deposition flux velocity (per dry deposited species)
 DryDep.template:            '%y4%m2%d2_%h2%n2z.nc4',
 DryDep.format:              'CFIO',
 DryDep.frequency:           010000
 DryDep.duration:            010000
 DryDep.mode:                'time-averaged'
 DryDep.fields:              'DryDepVel_?DRY?               ', 'GIGCchem',
                             'DryDepMix_?DRY?               ', 'GIGCchem',
                             'DryDepChm_?DRY?               ', 'GIGCchem',
                             'DryDep_?DRY?                  ', 'GIGCchem',

Photolysis diagnostics

  1. Photolysis rates (J-values)
 JValues.template:           '%y4%m2%d2_%h2%n2z.nc4',
 JValues.format:             'CFIO',
 JValues.frequency:          010000
 JValues.duration:           010000
 JValues.mode:               'time-averaged'
 JValues.fields:             'Jval_?PHO?                    ', 'GIGCchem',
  1. Photolysis rates at local noon (J-values)
 JValuesLocalNoon.template:  '%y4%m2%d2_%h2%n2z.nc4',
 JValuesLocalNoon.format:    'CFIO',
 JValuesLocalNoon.frequency: 010000
 JValuesLocalNoon.duration:  010000
 JValuesLocalNoon.mode:      'instantaneous'
 JValuesLocalNoon.fields:    'JNoon_?PHO?                   ', 'GIGCchem',

Diagnostics on level edges

  1. Level edge diagnostics (73-level only)
 LevelEdgeDiags.template:    '%y4%m2%d2_%h2%n2z.nc4',
 LevelEdgeDiags.format:      'CFIO',
 LevelEdgeDiags.frequency:   010000
 LevelEdgeDiags.duration:    010000
 LevelEdgeDiags.mode:        'time-averaged'
 LevelEdgeDiags.fields:      'Met_CMFMC                     ', 'GIGCchem',
                             'Met_PEDGE                      ', 'GIGCchem',
                             'Met_PEDGEDRY                   ', 'GIGCchem',
                             'Met_PFICU                      ', 'GIGCchem',
                             'Met_PFILSAN                    ', 'GIGCchem',
                             'Met_PFLCU                      ', 'GIGCchem',
                             'Met_PFLLSAN                    ', 'GIGCchem',

Production and loss rates

 # Prod/loss rates
 ProdLoss.template:          '%y4%m2%d2_%h2%n2z.nc4',
 ProdLoss.format:            'CFIO',
 ProdLoss.frequency:         010000
 ProdLoss.duration:          010000
 ProdLoss.mode:              'time-averaged'
 ProdLoss.fields:            'PROD_?PRD?                    ', 'GIGCchem', 
                             'ProdBCPIfromBCPO              ', 'GIGCchem', 
                             'ProdOCPIfromOCPO              ', 'GIGCchem',
                             'ProdSO4fromH2O2inCloud        ', 'GIGCchem',
                             'ProdSO4fromO3inCloud          ', 'GIGCchem',
                             'ProdSO4fromO3inSeaSalt        ', 'GIGCchem',
                             'ProdSO4fromHOBrInCloud        ', 'GIGCchem',
                             'ProdSO4fromSRO3               ', 'GIGCchem',
                             'ProdSO4fromSRHObr             ', 'GIGCchem',
                             'ProdSO4fromO3s                ', 'GIGCchem',
                             'LOSS_?LOS?                    ', 'GIGCchem',
                             'LossHNO3onSeaSalt             ', 'GIGCchem',

Fields of the State_Chm object

  1. State_Chm array diagnostics (see also Aerosols collection
 StateChm.template:          '%y4%m2%d2_%h2%n2z.nc4',
 StateChm.format:            'CFIO',
 StateChm.frequency:         010000
 StateChm.duration:          010000
 StateChm.mode:              'time-averaged'
 StateChm.fields:            'Chem_phSav                    ', 'GIGCchem',  
                             'Chem_HplusSav                 ', 'GIGCchem',  
                             'Chem_WaterSav                 ', 'GIGCchem',  
                             'Chem_SulRatSav                ', 'GIGCchem',  
                             'Chem_NaRatSav                 ', 'GIGCchem',  
                             'Chem_AcidPurSav               ', 'GIGCchem',  
                             'Chem_BiSulSav                 ', 'GIGCchem',
                             'Chem_pHCloud                  ', 'GIGCchem',
                             'Chem_SSAlk',                  ', 'GIGCchem',
                             'Chem_HSO3AQ                   ', 'GIGCchem',
                             'Chem_SO3AQ                    ', 'GIGCchem',
                             'Chem_fupdateHOBr              ', 'GIGCchem',

Fields of the State_Met object

# State_Met array diagnostics
 StateMet.template:          '%y4%m2%d2_%h2%n2z.nc4',
 StateMet.format:            'CFIO',
 StateMet.frequency:         010000
 StateMet.duration:          010000
 StateMet.mode:              'time-averaged'
 StateMet.fields:            'Met_AD                         ', 'GIGCchem',
                             'Met_AIRDEN                     ', 'GIGCchem',
                             'Met_AIRVOL                     ', 'GIGCchem',
                             'Met_ALBD                       ', 'GIGCchem',
                             'Met_AREAM2                     ', 'GIGCchem',
                             'Met_AVGW                       ', 'GIGCchem',
                             'Met_BXHEIGHT                   ', 'GIGCchem',
                             'Met_ChemGridLev                ', 'GIGCchem',
                             'Met_CLDF                       ', 'GIGCchem',
                             'Met_CLDFRC                     ', 'GIGCchem',
                             'Met_CLDTOPS                    ', 'GIGCchem',
                             'Met_DELP                       ', 'GIGCchem',
                             'Met_DQRCU                      ', 'GIGCchem',
                             'Met_DQRLSAN                    ', 'GIGCchem',
                             'Met_DTRAIN                     ', 'GIGCchem',
                             'Met_EFLUX                      ', 'GIGCchem',
                             'Met_FRCLND                     ', 'GIGCchem',
                             'Met_FRLAKE                     ', 'GIGCchem',
                             'Met_FRLAND                     ', 'GIGCchem',
                             'Met_FRLANDIC                   ', 'GIGCchem',
                             'Met_FROCEAN                    ', 'GIGCchem',
                             'Met_FRSEAICE                   ', 'GIGCchem',
                             'Met_FRSNO                      ', 'GIGCchem',
                             'Met_GWETROOT                   ', 'GIGCchem',
                             'Met_GWETTOP                    ', 'GIGCchem',
                             'Met_HFLUX                      ', 'GIGCchem',
                             'Met_LAI                        ', 'GIGCchem',
                             'Met_LWI                        ', 'GIGCchem',
                             'Met_PARDR                      ', 'GIGCchem',
                             'Met_PARDF                      ', 'GIGCchem',
                             'Met_PBLTOPL                    ', 'GIGCchem',
                             'Met_PBLH                       ', 'GIGCchem',
                             'Met_PHIS                       ', 'GIGCchem',
                             'Met_PMID                       ', 'GIGCchem',
                             'Met_PMIDDRY                    ', 'GIGCchem',
                             'Met_PRECANV                    ', 'GIGCchem',
                             'Met_PRECCON                    ', 'GIGCchem',
                             'Met_PRECLSC                    ', 'GIGCchem',
                             'Met_PRECTOT                    ', 'GIGCchem',
                             'Met_PS1DRY                     ', 'GIGCchem',
                             'Met_PS1WET                     ', 'GIGCchem',
                             'Met_PS2DRY                     ', 'GIGCchem',
                             'Met_PS2WET                     ', 'GIGCchem',
                             'Met_PSC2WET                    ', 'GIGCchem',
                             'Met_PSC2DRY                    ', 'GIGCchem',
                             'Met_QI                         ', 'GIGCchem',
                             'Met_QL                         ', 'GIGCchem',
                             'Met_OMEGA                      ', 'GIGCchem',
                             'Met_OPTD                       ', 'GIGCchem',
                             'Met_REEVAPCN                   ', 'GIGCchem',
                             'Met_REEVAPLS                   ', 'GIGCchem',
                             'Met_SLP                        ', 'GIGCchem',
                             'Met_SNODP                      ', 'GIGCchem',
                             'Met_SNOMAS                     ', 'GIGCchem',
                             'Met_SPHU                       ', 'GIGCchem',
                             'Met_SPHU1                      ', 'GIGCchem',
                             'Met_SPHU2                      ', 'GIGCchem',
                             'Met_SUNCOS                     ', 'GIGCchem',
                             'Met_SUNCOSmid                  ', 'GIGCchem',
                             'Met_SWGDN                      ', 'GIGCchem',
                             'Met_T                          ', 'GIGCchem',
                             'Met_TAUCLI                     ', 'GIGCchem',
                             'Met_TAUCLW                     ', 'GIGCchem',
                             'Met_THETA                      ', 'GIGCchem',
                             'Met_TMPU1                      ', 'GIGCchem',
                             'Met_TMPU2                      ', 'GIGCchem',
                             'Met_TO3                        ', 'GIGCchem',
                             'Met_TropHt                     ', 'GIGCchem',
                             'Met_TropLev                    ', 'GIGCchem',
                             'Met_TropP                      ', 'GIGCchem',
                             'Met_TS                         ', 'GIGCchem',
                             'Met_TSKIN                      ', 'GIGCchem',
                             'Met_TV                         ', 'GIGCchem',
                             'Met_U                          ', 'GIGCchem',
                             'Met_U10M                       ', 'GIGCchem',
                             'Met_USTAR                      ', 'GIGCchem',
                             'Met_UVALBEDO                   ', 'GIGCchem',
                             'Met_V                          ', 'GIGCchem',
                             'Met_V10M                       ', 'GIGCchem',
                             'Met_Z0                         ', 'GIGCchem',

Loss of soluble species in cloud updrafts

  1. Loss due to convection (per wet deposited species)
 WetLossConv.template:       '%y4%m2%d2_%h2%n2z.nc4',
 WetLossConv.format:         'CFIO',
 WetLossConv.frequency:      010000
 WetLossConv.duration:       010000
 WetLossConv.mode:           'time-averaged'
 WetLossConv.fields:         'WetLossConv_?WET?             ', 'GIGCchem',

Loss of soluble species in large-scale wet deposition

  1. Loss due to rainout and washout (per deposited species)
 WetLossLS.template:         '%y4%m2%d2_%h2%n2z.nc4',
 WetLossLS.format:           'CFIO',
 WetLossLS.frequency:        010000
 WetLossLS.duration:         010000
 WetLossLS.mode:             'time-averaged'
 WetLossLS.fields:           'WetLossLS_?WET?              ', 'GIGCchem',