Difference between revisions of "GNU Fortran compiler"
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IF ( UseConc /= Dct%Dta%IsConc ) THEN | IF ( UseConc /= Dct%Dta%IsConc ) THEN | ||
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Revision as of 18:23, 26 September 2016
Contents
Compilation options
The sections below contain useful information about the GNU Fortran compiler options that are used for GEOS-Chem.
Optimization options
Please see the Optimize Options section of the GNU Compiler Collection manual for detailed information about GNU Fortran's optimization settings.
The default GNU Fortran optimization settings for GEOS-Chem are: -O3 -funroll-loops.
--Bob Yantosca (talk) 22:01, 21 September 2016 (UTC)
Debugging options
Please see the Debugging Options section of the GNU Compiler Collection manual for detailed information about GNU Fortran's debugging settings.
--Bob Yantosca (talk) 20:16, 22 September 2016 (UTC)
List of commonly-used compilation options
Here are the GNU Fortran compilation options currently used by GEOS-Chem:
| Option | Description | How invoked in GEOS-Chem? |
|---|---|---|
| Normal compiler settings | ||
-cpp
|
Turns on the C-preprocessor, to evaluate #if and #define statements in the source code.
|
Default setting |
-fautomatic
|
This option places local variables (scalars and arrays of all types), except those declared as SAVE, on the run-time stack. It is as if the variables were declared with the AUTOMATIC attribute. It does not affect variables that have the SAVE attribute or ALLOCATABLE attribute, or variables that appear in an EQUIVALENCE statement or in a common block. | Default setting |
-fconvert-big-endian
|
Specifies that the format will be big endian for integer data and big endian IEEE floating-point for real and complex data. This only affects file I/O to/from binary files (such as binary punch files) but not ASCII, netCDF, or other file formats. | Default setting |
-fno-align-commons
|
Prevents the compiler from padding bytes anywhere in common blocks and structures. Padding can affect numerical precision. | Default setting |
-fopenmp
|
Enables OpenMP parallelization commands. | Default setting |
-funroll-loops
|
Typically improves performance on code using iterative DO loops by unrolling them and is probably generally appropriate for Fortran, though it is not turned on at any optimization level. Note that outer loop unrolling isn't done specifically; decisions about whether to unroll a loop are made on the basis of its instruction count.
Also, no `loop discovery' is done, so only loops written with DO benefit from loop optimizations, including—but not limited to—unrolling. Loops written with IF and GOTO are not currently recognized as such. This option unrolls only iterative DO loops, not DO WHILE loops. |
Default setting |
-O3
|
Performs nearly all supported optimizations that do not involve a space-speed tradeoff, plus a few more optimizations for function inlining and vectorization. For more information, please see the Optimize Options section of the GNU Compiler Collection manual. | Default setting |
-std=legacy
|
Tells GNU Fortran not to halt compilation when encountering code that does not adhere to the Fortran 95, 2003, or 2008 standards. Gfortran is a much stricter compiler, so turning this option on will tell Gfortran to be more lenient. | Default setting |
-w
|
Turns off most informational warnings. | Default setting |
| Special compiler settings | ||
-fdefault-real-8
|
This option tells the compiler to treat variables that are declared as REAL as REAL*8
NOTE: This option is not used globally, but is only applied to certain indidvidual files (mostly from third-party codes like ISORROPIA. Current GEOS-Chem programming practice is to use either REAL*4 or REAL*8 instead of REAL, which avoids confusion. |
Used as needed |
-freal-4-real-8
|
This option tells the compiler to treat variables that are declared as REAL as REAL*8
NOTE: This option is not used globally, but is only applied to certain indidvidual files (mostly from third-party codes like ISORROPIA. Current GEOS-Chem programming practice is to use either REAL*4 or REAL*8 instead of REAL, which avoids confusion. |
Used as needed |
-mcmodel=medium
|
This option is used to tell Gfortran to use more than 2GB of static memory. This avoids a specific type of memory error that can occur if you compile GEOS-Chem for use with an extremely high-resolution grid (e.g. 0.25° x 0.3125° nested grid). | Default setting |
| Settings only used for debugging | ||
-fbacktrace
|
This option tells the compiler to generate extra information in the object file to provide source file traceback information when a severe error occurs at run time. When the severe error occurs, source file, routine name, and line number correlation information is displayed along with call stack hexadecimal addresses (program counter trace). This option increases the size of the executable program, but has no impact on run-time execution speeds. It functions independently of the debug option. | TRACEBACK=yes
|
-fcheck-array-temporaries
|
Checks to see if any array temporaries are created. Depending on how you write your subroutine and function calls, the compiler may need to create a temporary array to hold the values in the array before it passes them to the subroutine. For detailed information, please see our Passing array arguments efficiently in GEOS-Chem wiki page. | DEBUG=yes
|
| -fcheck-bounds | Check for array-out-of-bounds errors. This is invoked when you compile GEOS-Chem with the BOUNDS=yes Makefile option. NOTE: Only use this option -fcheck-bounds for debugging, as this option will cause GEOS-Chem to execute more slowly!
|
BOUNDS=yes
|
-ffpe-trap=invalid,zero,overflow
|
This option will cause GEOS-Chem to halt when floating-point errors are encountered. This can happen if an equation results in a denormal value, e.g. NaN, or +/-Infinity. Common causes of floating-point errors are divisions where the denominator becomes zero.
|
FPE=yes
|
-finit-real-snan
|
This option will set local automatic variables to a signaling NaN. This will make it easier for the compiler to detect undefined variables. | FPE=yes
|
-g
|
Tells the compiler to generate full debugging information in the object file. This will cause a debugger (like Totalview) to display the actual lines of source code, instead of hexadecimal addresses (which is gibberish to anyone except hardware engineers). | DEBUG=yes
|
-O0
|
Turns off all optimization. Source code instructions (e.g. DO loops, IF blocks) and numerical expressions are evaluated in precisely the order in which they are listed, without being internally rewritten by the optimizer. This is necessary for using a debugger (like Totalview). | DEBUG=yes
|
-Wall
|
Enables some common compiler warnings that you probably would not enable out unless you were debugging. | DEBUG=yes |
-Warray-temporaries
|
Warn about array temporaries generated by the compiler. The information generated by this warning is sometimes useful in optimization, in order to avoid
such temporaries. Used in conjunction with |
DEBUG=yes
|
-Wconversion
|
Warn about implicit conversions that are likely to change the value of the expression after conversion. Implied by -Wall.
|
DEBUG=yes
|
-Wextra
|
-Wextra Enables some warning options for usages of language features which may be problematic. This currently includes -Wcompare-reals and -Wunused-parameter.
|
DEBUG=yes
|
--Bob Yantosca (talk) 21:55, 21 September 2016 (UTC)
Typical settings for a GEOS-Chem simulation
The normal GEOS-Chem build uses the following Gfortran compiler flags:
-cpp -w -std=legacy -fautomatic -fno-align-commons -fconvert=big-endian -fno-range-check -fopenmp -mcmodel=medium -O3 -funroll-loops
whereas a debugging run (meant to execute in a debugger such as TotalView) will typically use these flags:
-cpp -w -std=legacy -fautomatic -fno-align-commons -fconvert=big-endian -fno-range-check -fopenmp -mcmodel=medium -g -O0 -Wall -Wextra -Warray-temporaries -Wconversion -fcheck-array-temporaries -fbounds-check -fbacktrace -ffpe-trap=invalid,zero,overflow, -finit-real=snan
--Bob Yantosca (talk) 20:15, 22 September 2016 (UTC)
Modifications made to GEOS-Chem for GNU Fortran
Modules in HEMCO/Core
| Module | Code removed | Code added |
|---|---|---|
hco_calc_mod.F90 |
IF ( UseConc /= Dct%Dta%IsConc ) THEN |
IF ( UseConc .neqv. Dct%Dta%IsConc ) THEN |
hco_diagn_mod.F90 |
INTERFACE Diagn_Update MODULE PROCEDURE Diagn_UpdateSP MODULE PROCEDURE Diagn_UpdateDP END INTERFACE Removed DiagnUpdateSP and DiagnUpdateDP which used OPTIONAL arguments |
PRIVATE :: Diagn_UpdateSp0d PRIVATE :: Diagn_UpdateSp0d PRIVATE :: Diagn_UpdateSp2d PRIVATE :: Diagn_UpdateSp3d PRIVATE :: Diagn_UpdateDp0d PRIVATE :: Diagn_UpdateDp2d PRIVATE :: Diagn_UpdateDp3d ... INTERFACE Diagn_Update MODULE PROCEDURE Diagn_UpdateSp0d MODULE PROCEDURE Diagn_UpdateSp2d MODULE PROCEDURE Diagn_UpdateSp3d MODULE PROCEDURE Diagn_UpdateDp0d MODULE PROCEDURE Diagn_UpdateDp2d MODULE PROCEDURE Diagn_UpdateDp3d END INTERFACE Added new routines DiagnUpdateSp* and DiagUpdateDp* to avoid using OPTIONAL arguments |
hco_unit_mod.F90 |
'1', & 'count', & 'unitless', & etc. |
'1 ', & 'count ', & 'unitless ', & etc. All strings in array constructors now have same the # of spaces |
--Bob Yantosca (talk) 18:21, 26 September 2016 (UTC)
Modules in HEMCO/Extensions
| Module | Code removed | Code added | |
|---|---|---|---|
hcox_paranox_mod.F90 |
VARS(4) = ASIND( SC5(I,J) ) VARS(5) = ASIND( ExtState%SUNCOS%Arr%Val(I,J) ) |
VARS(4) = ASIN( SC5(I,J) ) / HcoState%Phys%PI_180 VARS(5) = ASIN( ExtState%SUNCOS%Arr%Val(I,J) ) / HcoState%Phys%PI_180 | |
|
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