GEOS-Chem 14.0.0

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GEOS-Chem Versions Page

This page includes information about GEOS-Chem 14.0.0 (currently under development).

Version overview

The following items have been added to GEOS-Chem 14.0.0 since the last GEOS-Chem version GEOS-Chem 13.4.0. Also see the following Github pages:

Feature Contributor(s) Model scope Notes and references
Updates that will affect full-chemistry benchmark simulations
Fix bugs causing differences when splitting up GC-Classic and GCHP simulations in time Lizzie Lundgren (GCST) Initialization
  • geoschem/geos-chem PR #1229
  • GCHP fullchem simulations now identical if broken up in time
  • Differences in GCClassic persist due to I/O precision limitation of HEMCO
Remove unnecessary met-fields from GCClassic restart file that caused incorrect initial meteorology Lizzie Lundgren (GCST) Restart files
Updates that will NOT affect full-chemistry benchmark simulations
Updated offline biogenic VOC emissions Hongjian Weng (PKU) Emissions
Updated offline soil NOx emissions Hongjian Weng (PKU) Emissions
Convert input.geos to geoschem_config.yml Bob Yantosca (GCST) Input files
Update to KPP 2.5.0 Bob Yantosca (GCST) Structural
Change 4D State_Chm%Species array to vector of 3D concentration arrays Lizzie Lundgren (GCST) Structural
Fix to save boundary conditions on first timestep Eloise Marais (UCL) Diagnostics
Fix bug in total OC diagnostic Lizzie Lundgren (GCST) Diagnostics
Avoid div-by-zero in routine MMR_Compute_Flux Bob Yantosca (GCST) Bug fix
Minor HEMCO updates, including: Bob Yantosca (GCST)
Lizzie Lundgren (GCST)
Melissa Sulprizio (GCST) 		Structural
Updates that will only affect GCHP
Upgrade GMAO libraries in GCHP Liam Bindle (GCST)
Lizzie Lundgren (GCST) 		Structural
Add option to use native GEOS-FP met fields in GCHP
  • Includes choice of mass fluxes or derived winds for advection
 Liam Bindle (GCST) Met fields
Run directory updates to easily break up GCHP runs in time Lizzie Lundgren (GCST) Structural
Bug fixes for MEGAN HEMCO extension Lizzie Lundgren (GCST) Emissions

New data directories

The following data directories have been added or updated in this version. You will have to download the directories relevant to your simulation.

Inventory Simulations What was added? Directory
GEOS-FP All Native GEOS-FP met fields at c720 resolution (~12 km), includes mass fluxes and derived winds.
Using these fields is an option in GCHP. 		ExtData/GEOS_C720
OFFLINE_BIOVOC Full-chemistry;
Aerosols 		Updated offline biogenic VOC emissions to include the following updates based on GEOS-Chem 13.2.0:
  • Use new version Yuan-processed MODIS LAI (v2021-06);
  • Fix the unit bug for soil NOx emission;
  • Add methanol (MOH);
  • All emissions are now all in kg species/m2/s instead of kgC/m2/s
 ExtData/HEMCO/OFFLINE_BIOVOC/v2021-12
OFFLINE_SOILNOX Full-chemistry Updated offline soil NOx emissions to include the following updates based on GEOS-Chem 13.2.0:
  • Fix the unit bug for soil NOx emission;
  • All emissions are now all in kg species/m2/s instead of kgN/m2/s
 ExtData/HEMCO/OFFLINE_SOILNOX/v2021-12

1-month full-chemistry benchmarks

1-month benchmark setup

The following table describes the GEOS-Chem setup for both GEOS-Chem Classic and GCHP 1-month benchmark simulations.

Git tag(s):
  • GEOS-Chem Classic: 14.0.0-rc.0
  • GCHP: 14.0.0-rc.0
  • HEMCO: 3.5.0-rc.0
Compared to previous benchmark: 13.4.0
Software environment: gcc 10.2.0
OpenMPI 4.1.0
netcdf-fortran 4.5.3
CMake 3.17.3
ESMF 8.0.1
Model resolution:
  • GEOS-Chem Classic: 4° x 5°
  • GCHP: c24
Meteorology fields: MERRA-2
  • GEOS-Chem Classic: 4° x 5°
  • GCHP: 0.5° x 0.625°
Initial conditions: July 1, 2019
  • NOTE: GCHP c48 restart file regridded from GEOS-Chem Classic 4° x 5°
Benchmark month: July 2019
Chemistry setup: See fullchem.eqn
This version will impact:
(select all that apply with boldface)
  • Emissions
  • Photolysis
  • Chemistry
  • Dry Deposition
  • Wet Deposition
  • Advection
  • BL Mixing
  • Convection
  • Meteorology Fields
  • Other (please specify): Initial conditions

1-month internal benchmarks

Each update that will introduce a significant change in the full-chemistry simulation is tagged with an alpha version in Git. For each of these alpha versions, the GCST runs an internal 1-month benchmark simulation to isolate the impact from that update.

For more details on the update(s) included in each alpha version and a link to benchmark results, see this Google sheet.

1-month benchmark assessment form

Performance GEOS-Chem Classic GCHP
Grid resolution: 4° x 5° C24
# CPUs, nodes: 62 CPUs
1 node (AWS) 		62 CPUs
1 nodes (AWS)
Wall time: 06:37:22 06:32:16
CPU time / wall time: TBD TBD
% of ideal performance: TBD TBD
Memory: TBD TBD
Global mean OH:
(% change from previous version) 		12.04155987222 x 105 molec/cm3
(-0.0055%) 		11.89140941865 x 105 molec/cm3
(-0.66%)
Methyl chloroform lifetime:
(% change from previous version) 		5.131006 years
(-0.0034%) 		5.171676 years
(0.65%)
Methane lifetime:
(% change from previous version) 		8.647998 years
(-0.0045%) 		8.709415 years
(0.63%)
Details
Species, J-Values, and COLUMN AOD values that changed by 10% or more at the surface: GEOS-Chem Classic
14.0.0-rc.0 vs 13.4.0-rc.4 		GCHP 14.0.0-rc.0 vs 13.4.0-rc.4
Species and J-Values that changed by 10% or more at 500 hPa: GEOS-Chem Classic
14.0.0-rc.0 vs 13.4.0-rc.4 		GCHP 14.0.0-rc.0 vs 13.4.0-rc.4
Species and J-Values that changed by 10% or more in zonal mean: GEOS-Chem Classic
14.0.0-rc.0 vs 13.4.0-rc.4 		GCHP 14.0.0-rc.0 vs 13.4.0-rc.4
Emissions that changed by 10% or more: [hhttp://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-13.4.0-gcc-4x5-1Mon-14.0.0-rc.0/BenchmarkResults/SigDiffs_emissions.txt GEOS-Chem Classic
14.0.0-rc.0 vs 13.4.0-rc.4] 		GCHP 14.0.0-rc.0 vs 13.4.0-rc.4
Overview
This version mainly included zero-difference updates. Small differences were introduced by the fixes to address bugs that cause differences when splitting up GC-Classic and GCHP simulations in time.
Approval
Requires further investigation:
Approved by:
Date of approval:


1-month GEOS-Chem Classic version comparison (14.0.0-rc.0 vs 13.4.0-rc.4)

Below are links to plots and tables comparing 1-month simulations for GEOS-Chem Classic 14.0.0-rc.0 (Dev) and GEOS-Chem Classic 13.4.0-rc.4 (Ref).

Species Category Plots Additional Information
Level Map Zonal Mean Emissions
Oxidants

O3, CO, OH, NOx

sfc 500hPa full column stratosphere sfc
Aerosols

DST1, DST2, DST3, DST4, NH4, NIT, SO4, HMS, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA, pFe

sfc 500hPa full column stratosphere column total AOD
Bromine

Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr

sfc 500hPa full column stratosphere column total
Chlorine

Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO

sfc 500hPa full column stratosphere --
Iodine

Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO

sfc 500hPa full column stratosphere column total
Nitrogen

NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3, AONITA, ETHN, BZPAN, NPHEN

sfc 500hPa full column stratosphere column total
Primary Organics

EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H2, C2H4, C2H6, C3H8, PRPE, TOLU, XYLE

sfc 500hPa full column stratosphere column total
Secondary Organics

ACTA, ALD2, BALD, CH2O, HPALDs, MACR, IEPOX, ACET, HAC, MEK, MVK, ISOPN, GLYC, GLYX, HCOOH, MAP, PHEN, RCHO, ETHP, MP

sfc 500hPa full column stratosphere column total
Secondary Organic Aerosols

TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS

sfc 500hPa full column stratosphere column total
Sulfur

SOx, DMS, HMS, OCS, SO2, SO4

sfc 500hPa full column stratosphere column total
ROy

H2O2, H, H2, H2O, HO2, O1D, OH, RO2

sfc 500hPa full column stratosphere --
J-values sfc 500hPa full column stratosphere -- --
 
Emissions by HEMCO category Total

Aircraft, Anthropogenic, Biomass Burning, Biogenic, Lightning, Natural, Ocean, Seabirds, Decaying Plants, Ship, Soil, Degassing Volcanoes, Erupting Volcanoes

Emission totals Tables by species

Tables by inventory

Global mass Entire atmosphere

Troposphere only

Metrics OH concentration, MCF lifetime, CH4 lifetime

1-month GCHP version comparison (14.0.0-rc.0 vs 13.4.0-rc.4)

Below are links to plots and tables comparing 1-month simulations for GCHP 14.0.0-rc.0 (Dev) and GCHP 13.4.0-rc.4 (Ref).

Species Category2 Plots Additional Information
Level Map Zonal Mean Emissions
Oxidants

O3, CO, OH, NOx

sfc 500hPa full column stratosphere column total
Aerosols

DST1, DST2, DST3, DST4, NH4, NIT, SO4, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA, pFe

sfc 500hPa full column stratosphere column total AOD
Bromine

Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr

sfc 500hPa full column stratosphere column total
Chlorine

Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO

sfc 500hPa full column stratosphere --
Iodine

Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO

sfc 500hPa full column stratosphere column total
Nitrogen

NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3

sfc 500hPa full column stratosphere column total
Primary Organics

EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H6, C3H8, PRPE, TOLU, XYLE

sfc 500hPa full column stratosphere column total
Secondary Organics

ACTA, ALD2, CH2O, HPALDs, MACR, IEPOX, ACET, HAC, MEK, MVK, ISOPN, GLYC, GLYX, HCOOH, MAP, RCHO, MP

sfc 500hPa full column stratosphere column total
Secondary Organic Aerosols

TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS

sfc 500hPa full column stratosphere column total
Sulfur

SOx, DMS, HMS, OCS, SO2, SO4

sfc 500hPa full column stratosphere column total
ROy

H2O2, H, H2, H2O, HO2, O1D, OH, RO2

sfc 500hPa full column stratosphere --
J-values sfc 500hPa full column stratosphere -- --
 
Emissions by HEMCO category Total

Aircraft, Anthropogenic, Biomass Burning, Biogenic, Lightning, Natural, Ocean, Seabirds, Decaying Plants, Ship, Soil, Degassing Volcanoes, Erupting Volcanoes

Emission totals Tables by species

Tables by inventory

Global mass Entire atmosphere

Troposphere only

1-month GCHP (14.0.0-rc.0) vs. GEOS-Chem Classic (14.0.0-rc.0) comparison

Below are links to plots and tables comparing 1-month simulations for GCHP 14.0.0-rc.0 (Dev) and GEOS-Chem Classic 14.0.0-rc.0 (Ref).

Species Category2 Plots Additional Information
Level Map Zonal Mean Emissions
Oxidants

O3, CO, OH, NOx

sfc 500hPa full column stratosphere column total
Aerosols

DST1, DST2, DST3, DST4, NH4, NIT, SO4, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA, pFe

sfc 500hPa full column stratosphere column total AOD
Bromine

Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr

sfc 500hPa full column stratosphere column total
Chlorine

Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO

sfc 500hPa full column stratosphere --
Iodine

Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO

sfc 500hPa full column stratosphere column total
Nitrogen

NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3

sfc 500hPa full column stratosphere column total
Primary Organics

EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H6, C3H8, PRPE, TOLU, XYLE

sfc 500hPa full column stratosphere column total
Secondary Organics

ACTA, ALD2, CH2O, HPALDs, MACR, IEPOX, ACET, HAC, MEK, MVK, ISOPN, GLYC, GLYX, HCOOH, MAP, RCHO, MP

sfc 500hPa full column stratosphere column total
Secondary Organic Aerosols

TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS

sfc 500hPa full column stratosphere column total
Sulfur

SOx, DMS, HMS, OCS, SO2, SO4

sfc 500hPa full column stratosphere column total
ROy

H2O2, H, H2, H2O, HO2, O1D, OH, RO2

sfc 500hPa full column stratosphere --
J-values sfc 500hPa full column stratosphere -- --
 
Emissions by HEMCO category Total

Aircraft, Anthropogenic, Biomass Burning, Biogenic, Lightning, Natural, Ocean, Seabirds, Decaying Plants, Ship, Soil, Degassing Volcanoes, Erupting Volcanoes

Emission totals Tables by species

Tables by inventory

Global mass Entire atmosphere

Troposphere only

1-month GCHP vs GEOS-Chem-Classic diff-of-diffs

Below are links to plots and tables comparing 1-month simulations for GCHP 14.0.0-rc.0 - 13.4.0-rc.4 (Dev) and GEOS-Chem Classic GCHP 14.0.0-rc.0 - 13.4.0-rc.4 (Ref).

Species Category2 Plots
Level Map Zonal Mean
Oxidants

O3, CO, OH, NOx

sfc 500hPa full column stratosphere
Aerosols

DST1, DST2, DST3, DST4, NH4, NIT, SO4, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA, pFe

sfc 500hPa full column stratosphere
Bromine

Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr

sfc 500hPa full column stratosphere


Chlorine

Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO

sfc 500hPa full column stratosphere
Iodine

Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO

sfc 500hPa full column stratosphere


Nitrogen

NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3

sfc 500hPa full column stratosphere
Primary Organics

EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H6, C3H8, PRPE, TOLU, XYLE

sfc 500hPa full column stratosphere
Secondary Organics

ACTA, ALD2, CH2O, HPALDs, MACR, IEPOX, ACET, HAC, MEK, MVK, ISOPN, GLYC, GLYX, HCOOH, MAP, RCHO, MP

sfc 500hPa full column stratosphere
Secondary Organic Aerosols

TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS

sfc 500hPa full column stratosphere
Sulfur

SOx, DMS, OCS, SO2, SO4

sfc 500hPa full column stratosphere
ROy

H2O2, H, H2, H2O, HO2, O1D, OH, RO2

sfc 500hPa full column stratosphere

1-year full-chemistry benchmarks

Model setup

The following table describes the GEOS-Chem setup for both GEOS-Chem Classic and GCHP 1-year benchmark simulations.

Git tag(s):
Compared to previous benchmark: 13.4.0
Software environment: gcc 10.2.0
OpenMPI 4.1.0
netcdf-fortran 4.5.3
CMake 3.17.3
ESMF 8.0.1
Model resolution:
  • GEOS-Chem Classic: 4° x 5°
  • GCHP: c24
Meteorology fields: MERRA-2
  • GEOS-Chem Classic: 4° x 5°
  • GCHP: 0.5° x 0.625°
Spin-up initial conditions: *January 1, 2019 from 14.0.0 10-year benchmark
  • NOTE: GCHP c48 regridded from GEOS-Chem Classic 4° x 5°
Benchmark date: Spin-up run: Jan 2010 - Dec 2018
Production run: Jan 2019 - Dec 2019

GEOS-Chem Classic 14.0.0 vs 13.4.0

Below are links to plots and tables comparing 1-year full-chemistry simulations for GEOS-Chem Classic 14.0.0-rc.0 (Dev) and GEOS-Chem Classic 13.4.0-rc.4 (Ref).

Category1 Plots Additional Information
Level Map Zonal Mean Emissions
Oxidants

O3, CO, OH, NOx

Surface 500 hPa Full column Stratosphere Full column
Aerosols

DST1, DST2, DST3, DST4, NH4, NIT, SO4, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA

Surface 500 hPa Full column Stratosphere Full column AOD

Aerosol profiles
Aerosol burdens
Global mean AOD

Bromine

Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH4Br, CH2Br2, CH2Br2, CH3Br3, HOBr, HBr

Surface 500 hPa Full column Stratosphere Full column
Chlorine

Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH4CCl3, HOCl, HCl, Halons, HCFCs, OClO

Surface 500 hPa Full column Stratosphere -
Iodine

Iy, IxOy, I, I2, IBr, ICl, IO, INO2, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO

Surface 500 hPa Full column Stratosphere Full column
Nitrogen

NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3

Surface 500 hPa Full column Stratosphere Full column
Primary Organics

EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H6, C3H8, PRPE, TOLU, XYLE

Surface 500 hPa Full column Stratosphere Full column
Secondary Organics

ACTA, ALD2, CH2O, HPALDs, MACR, IEPOX, ACET, MEK, MVK, ISOPN, GLYX, HCOOH, MAP, RCHO, MP

Surface 500 hPa Full column Stratosphere Full column
Secondary Organic Aerosols

TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS

Surface 500 hPa Full column Stratosphere Full column
Sulfur

SOx, DMS, OCS, SO2, SO4

Surface 500 hPa Full column Stratosphere Full column
ROy

H2O2, H, H2, H2O, HO2, O1D, OH, RO2

Surface 500 hPa Full column Stratosphere -
J-values Surface 500 hPa Full column Stratosphere -
 
Emissions by HEMCO category
Emission totals
Global mass
Metrics

OH concentration, MCF lifetime, CH4 lifetime

Budgets Budgets after operations: Jan, Apr, Jul, Oct
Strat-trop exchange
Model vs Observations
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