List of diagnostics archived to bpch format

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On this page we list the various diagnostic quantities that you can archive with GEOS-Chem. These diagnostic quantities are archived to "binary punch" (aka bpch) format.

NOTE: Most bpch diagnostics will be removed from GEOS-Chem 12.7.0 and later versions.

Overview

The tables below list the following parameters for each diagnostic that is archived to bpch format:

NDxx # The index for each slot of the given "NDxx" bpch diaggnostic.
Dims Diagnostics are usually 2-D or 3-D, with I,J,L for longitude, latitude and level indices.

N as a third or fourth dimension refers to the number of species that a diagnostic can carry.

Description A short overview of the given diagnostic.
Units The physical units of the given diagnostic quantity
Category The 8-character name used by GAMAP to reference a particular diagnostic field. Information about how to set the different flags in the input.geos file can be found in the Diagnostic Menu section of our GEOS-Chem Input Files wiki page.
Simulations A list of simulations for which this particular diagnostic is valid.
netCDF equivalent The name under which the same diagnostic is available as netCDF output (in GEOS-Chem v11-02 and higher). See the List of diagnostics archived to netCDF format wiki page for more information.

You can specify which diagnostic quantities you want to archive by modifying the various menus of the input.geos file, which is contained in your the GEOS-Chem run directory. The relevant menus of input.geos are:

ND01: Rn-Pb-Be sources

ND01 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) 222Rn emissions kg/s RN-SRCE Rn-Pb-Be EmisRn_Soil REMOVED IN 12.7.0
2 (I,J,L) 210Pb emissions kg/s RN-SRCE Rn-Pb-Be PbfromRadDecay REMOVED IN 12.7.0
3 (I,J,L) 7Be emissions kg/s RN-SRCE Rn-Pb-Be EmisBe_Cosmic REMOVED IN 12.7.0

ND02: Rn-Pb-Be decay

ND02 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) 222Rn loss kg/s RN-DECAY Rn-Pb-Be RadDecay_Rn REMOVED IN 12.7.0
2 (I,J,L) 210Pb loss kg/s RN-DECAY Rn-Pb-Be RadDecay_Pb REMOVED IN 12.7.0
3 (I,J,L) 7Be loss kg/s RN-DECAY Rn-Pb-Be RadDecay_Be7 REMOVED IN 12.7.0

ND03: Mercury emissions and P/L

NOTE: The slots of the ND03 diagnostic were updated in GEOS-Chem 12.0.0. The bpch diagnostics are slated for removal in a future version of GEOS-Chem.

ND03 # Dims Description Units Category Simulations netCDF equivalent Notes
Hg emission diagnostics (HG-SRCE)
1 (I,J) Anthropogenic Hg0 emission kg HG-SRCE Hg
tagHg		 EmisHg0anthro
2 (I,J) Total mass of oceanic Hg0 kg HG-SRCE Hg
tagHg		 MassHg0inOcean
3 (I,J) Oceanic emission of Hg0 kg HG-SRCE Hg
tagHg		 EmisHg0ocean
4 (I,J) Land reemission of Hg0 kg HG-SRCE Hg
tagHg		 EmisHg0land
5 (I,J) Land natural emission of Hg0 kg HG-SRCE Hg
tagHg		 EmisHg0geogenic
6 (I,J) Anthropogenic Hg2 emission kg HG-SRCE Hg
tagHg		 EmisHg2HgPanthro
7 (I,J) Total mass of oceanic Hg2 kg HG-SRCE Hg
tagHg		 MassHg2inOcean
8 (I,J) Mass of Hg2 sunk in the ocean kg HG-SRCE Hg
tagHg		 FluxHg2toDeepOcean netCDF units: kg/s
9 (I,J) Anthropogenic HgP emission kg HG-SRCE Hg
tagHg		 NOTE: HgP is now emitted into Hg2
10 (I,J) Total oceanic mercury kg HG-SRCE Hg
tagHg		 MassHgTotalOcean
11 (I,J) Total mass of oceanic HgP kg HG-SRCE Hg
tagHg		 MassHgPinOcean
12 (I,J) Mass of organic carbon sunk in ocean kg HG-SRCE Hg
tagHg		 FluxOCtoDeepOcean netCDF units: kg/s
13 (I,J) Emissions from biomass burning kg HG-SRCE Hg
tagHg		 EmisHg0biomass
14 (I,J) Emissions from vegetation kg HG-SRCE Hg
tagHg		 EmisHg0vegetation
15 (I,J) Emissions from soils kg HG-SRCE Hg
tagHg		 EmisHg0soil
16 (I,J) Flux-up Hg0 volat from ocean kg HG-SRCE Hg
tagHg		 FluxHg0fromOceanToAir netCDF units: kg/s
17 (I,J) Flux-down Hg0 dry dep to ocean kg HG-SRCE Hg
tagHg		 FluxHg0fromAirToOcean netCDF units: kg/s
18 (I,J) Snow emission of Hg kg HG-SRCE Hg
tagHg		 EmisHg0snow
19 (I,J) Hg2 delivered to ocean from snowmelt kg HG-SRCE Hg
tagHg		 EmisHg2snowToOcean netCDF units: kg/s
20 (I,J) Hg2/HgP deposition to open ocean kg HG-SRCE Hg
tagHg		 FluxHg2HgPfromAirToOcean netCDF units: kg/s
21 (I,J) Hg2/HgP deposition to snow and ice kg HG-SRCE Hg
tagHg		 FluxHg2HgPfromAirToSnow netCDF units: kg/s
22 (I,J) Emission of Hg2 from rivers kg HG-SRCE Hg
tagHg		 EmisHg2rivers
Production of Hg2 and related quantities (PL-HG2-$)
1 (I,J,L) Production of Hg2 from Hg0 kg PL-HG2-$ Hg
tagHg		 ProdHg2fromHg0
2 (I,J,L) Production of Hg2 from rxn w/ OH kg PL-HG2-$ Hg
tagHg		 ProdHg2fromOH
3 (I,J,L) Production of Hg2 from rxn w/ O3 kg PL-HG2-$ Hg
tagHg		 ProdHg2fromO3
4 (I,J,L) Loss of Hg2 from rxn w/ sea salt kg PL-HG2-$ Hg
tagHg		 LossHg2bySeaSalt
5 (I,J,L) Loss rate of Hg2 from rxn w/ sea salt [s-1] PL-HG2-$ Hg
tagHg		 LossRateHg2bySeaSalt
6 (I,J,L) Production of Hg2 from Br kg PL-HG2-$ Hg
tagHg		 ProdHg2fromBr
7 (I,J,L) Production of Hg2 from BrY kg PL-HG2-$ Hg
tagHg		 ProdHg2fromBrY
8 (I,J,L) Production of Hg2 from ClY kg PL-HG2-$ Hg
tagHg		 ProdHg2fromClY
9 (I,J,L) Br concentration molec/cm3 PL-HG2-$ Hg
tagHg		 ConcBr
10 (I,J,L) BrO concentration molec/cm3 PL-HG2-$ Hg
tagHg		 ConcBrO
11 (I,J,L) Particulate bound mercurfy pptv PL-HG2-$ Hg
tagHg		 ParticulateBoundHg
12 (I,J,L) Reactive gaseous mercury pptv PL-HG2-$ Hg
tagHg		 ReactiveGaseousHg
13 (I,J,L) Polar Br concentration pptv PL-HG2-$ Hg
tagHg		 PolarConcBr
14 (I,J,L) Polar BrO concentration pptv PL-HG2-$ Hg
tagHg		 PolarConcBrO
15 (I,J,L) Polar BrO3 concentration pptv PL-HG2-$ Hg
tagHg		 PolarConcBrO3
16 (I,J,L) Production of Hg2 from HgBr + Br2 kg PL-HG2-$ Hg
tagHg		 ProdHg2fromHgBrPlusBr2
17 (I,J,L) Production of Hg2 from HgBr + BrBrO kg PL-HG2-$ Hg
tagHg		 ProdHg2fromHgBrPlusBrBrO
18 (I,J,L) Production of Hg2 from HgBr + BrHO2 kg PL-HG2-$ Hg
tagHg		 ProdHg2fromHgBrPlusBrHO2
19 (I,J,L) Production of Hg2 from HgBr + BrNO2 kg PL-HG2-$ Hg
tagHg		 ProdHg2fromHgBrPlusBrNO2
20 (I,J,L) Production of Hg2 from HgBr + BrClO kg PL-HG2-$ Hg
tagHg		 ProdHg2fromHgBrPlusBrClO
21 (I,J,L) Production of Hg2 from HgBr + BrOH kg PL-HG2-$ Hg
tagHg		 ProdHg2fromHgBrPlusBrOH

ND04: CO2 sources

NOTE: In GEOS-Chem 12.1.0 and higher, all of the CO2 diagnostics (with the exception of the CO2 chemical source) will be archived via HEMCO diagnostics.

ND04 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) CO2 fossil fuel emiss [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
2 (I,J) CO2 ocean emissions [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
3 (I,J) CO2 balanced biosphere [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
4 (I,J) CO2 biomass burning emiss [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
5 (I,J) CO2 biofuel emission [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
6 (I,J) CO2 net terrestrial exchange [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
7 (I,J) CO2 ship emissions [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
8 (I,J,L) CO2 aircraft emissions [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
9 (I,J,L) CO2 chemical source [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0
10 (I,J) CO2 chemical source surface correction [atoms C/cm2/s] CO2-SRCE CO2 REMOVED IN 12.7.0

ND05: P/L for sulfate aerosols

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND05 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) P(SO2) from DMS + OH
 [kg S] PL-SUL=$ aerosol ProdSO2fromDMSandOH REMOVED IN 12.7.0
2 (I,J,L) P(SO2) from DMS + NO3 [kg S] PL-SUL=$ aerosol ProdSO2fromDMSandNO3 REMOVED IN 12.7.0
3 (I,J,L) Total P(SO2) from DMS [kg S] PL-SUL=$ aerosol ProdSO2fromDMS REMOVED IN 12.7.0
4 (I,J,L) P(MSA) from DMS [kg S] PL-SUL=$ aerosol ProdMSAfromDMS REMOVED IN 12.7.0
5 (I,J,L) P(SO4) from the gas phase [kg S] PL-SUL=$ aerosol ProdSO4fromGasPhase REMOVED IN 12.7.0
6 (I,J,L) P(SO4) from aqueous oxidation of H2O2 in clouds [kg S] PL-SUL=$ aerosol
all fullchem		 ProdSO4fromH2O2inCloud REMOVED IN 12.7.0
7 (I,J,L) P(SO4) from aqueous oxidation of O3 in clouds [kg S] PL-SUL=$ aerosol
all fullchem		 ProdSO4fromO3inCloud REMOVED IN 12.7.0
8 (I,J,L) P(SO4) from aqueous oxidation of O2 in clouds (metal catalyzed) [kg S] PL-SUL=$ aerosol
all fullchem		 ProdSO4fromO2inCloudMetal REMOVED IN 12.7.0
9 (I,J,L) P(SO4) from O3 on sea salt aerosols [kg S] PL-SUL=$ aerosol
all fullchem		 ProdSO4fromO3inSeaSAlt REMOVED IN 12.7.0
10 (I,J,L) L(OH) by DMS [kg OH] PL-SUL=$ aerosol Removed in 12.0.0
11 (I,J,L) L(NO3) by DMS [kg NO3] PL-SUL=$ aerosol Removed in 12.0.0
12 (I,J,L) P(SO4) from oxidation on dust aerosols [kg S] PL-SUL=$ aciduptake ProdSO4fromOxidationOnDust REMOVED IN 12.7.0
13 (I,J,L) P(NIT) from HNO3 uptake on dust [kg N] PL-SUL=$ aciduptake ProdNITfromHNO3UptakeOnDust REMOVED IN 12.7.0
14 (I,J,L) P(SO4) from uptake of H2SO4(g) [kg N] PL-SUL=$ aciduptake ProdSO4fromUptakeOfH2SO4g REMOVED IN 12.7.0
15 (I,J,L) L(HNO3) on sea salt aerosols [kg N] PL-SUL=$ aerosol
all fullchem		 LossHNO3onSeaSalt REMOVED IN 12.7.0
16 (I,J,L) P(SO4) from aqueous oxidation with HOBr in clouds [kg S] PL-SUL=$ all fullchem ProdSO4fromHOBrInCloud REMOVED IN 12.7.0
17 (I,J,L) P(SO4) from by SRO3 [kg S] PL-SUL=$ aerosol
all fullchem		 ProdSO4fromSRO3 REMOVED IN 12.7.0
18 (I,J,L) P(SO4) from SRHOBr [kg S] PL-SUL=$ all fullchem ProdSO4fromSRHOBr REMOVED IN 12.7.0
19 (I,J,L) P(SO4) by O3s [kg S] PL-SUL=$ aerosol
all fullchem		 ProdSO4fromO3s REMOVED IN 12.7.0

ND06: Dust emissions

ND06 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) DST1 (Dust aerosol, Reff = 0.7 microns) [kg] DUSTSRCE all simulations EmisDST1_Natural REMOVED IN 12.7.0
2 (I,J) DST2 (Dust aerosol, Reff = 1.4 microns) [kg] DUSTSRCE all simulations EmisDST2_Natural REMOVED IN 12.7.0
3 (I,J) DST3 (Dust aerosol, Reff = 2.4 microns) [kg] DUSTSRCE all simulations EmisDST3_Natural REMOVED IN 12.7.0
4 (I,J) DST4 (Dust aerosol, Reff = 4.5 microns) [kg] DUSTSRCE all simulations EmisDST4_Natural REMOVED IN 12.7.0

ND07: BC and OC sources

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND07 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) BLACK CARBON from anthro sources [kg] BC-ANTH all fullchem
aerosol		 REMOVED IN 12.7.0
2 (I,J) BLACK CARBON from biomass burning [kg] BC-BIOB all fullchem
aerosol		 REMOVED IN 12.7.0
3 (I,J) BLACK CARBON from biofuels [kg] BC-BIOF all fullchem
aerosol		 REMOVED IN 12.7.0
4 (I,J,L) Hydrophilic BC from Hydrophobic BC [kg] PL-BC=$ all fullchem
aerosol		 ProdBCPIfromBCPO REMOVED IN 12.7.0
5 (I,J) ORGANIC CARBON from anthro sources [kg] OC-ANTH all fullchem
aerosol		 REMOVED IN 12.7.0
6 (I,J) ORGANIC CARBON from biomass burning [kg] OC-BIOB all fullchem
aerosol		 REMOVED IN 12.7.0
7 (I,J) ORGANIC CARBON from biofuels [kg] OC-BIOF all fullchem
aerosol		 REMOVED IN 12.7.0
8 (I,J) ORGANIC CARBON from biogenic sources [kg] OC-BIOG all fullchem
aerosol		 REMOVED IN 12.7.0
9 (I,J,L) Hydrophilic OC from Hydrophobic OC [kg] PL-OC=$ all fullchem
aerosol		 ProdOCPIfromOCPO REMOVED IN 12.7.0

ND07 diagnostic quantities for SOA simulations

NOTE: All complex SOA refers to all simulations that use the Complex SOA option (i.e. benchmark, complexSOA, complexSOA_SVPOA).

ND07 # Dims Description Units Category Simulations netCDF equivalent Notes
10 (I,J) ORGANIC CARBON : a-pinene, b-pinene, sabinene, carene source [kg] OC-MTPA all complex SOA REMOVED IN 12.7.0
11 (I,J) ORGANIC CARBON : limonene source [kg] OC-LIMO all complex SOA REMOVED IN 12.7.0
12 (I,J) ORGANIC CARBON : terpinene, terpinolene, myrcene, ocimene, other monoterpenes source [kg] OC-MTPO all fullchem
aerosol
13 (I,J) ORGANIC CARBON : sesquiterpene source [kg] OC-SESQ all complex SOA REMOVED IN 12.7.0
15 (I,J,L) SOA produced from monoterpenes + sesquiterpenes [kg] PL-OC=$ all complex SOA REMOVED IN 12.7.0
16 (I,J,L) SOA produced from isoprene [kg] PL-OC=$ all complex SOA REMOVED IN 12.7.0
17 (I,J,L) SOA produced from light aromatics and IVOCs [kg] PL-OC=$ all complex SOA REMOVED IN 12.7.0
18 (I,J,L) SOA produced from primary SVOCs [kg] PL-OC=$ all complex SOA REMOVED IN 12.7.0
19 (I,J,L) SOA produced from POG + OH reaction [kg] PL-OC=$ all complex SOA REMOVED IN 12.7.0
20 (I,J,L) SOAG production from GLYX in aerosol [kg] SOAGM=$ all complex SOA none Removed in 12.0.0
21 (I,J,L) SOAM production from MGLY in aerosol [kg] SOAGM=$ all complex SOA none Removed in 12.0.0
22 (I,J,L) SOAG production from GLYX in cloud [kg] SOAGM=$ all complex SOA none Removed in 12.0.0
23 (I,J,L) SOAM production from MGLY in cloud [kg] SOAGM=$ all complex SOA none Removed in 12.0.0

ND08: Sea salt emissions

ND08 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Accumulation mode seasalt [kg] SALTSRCE all simulations EmisSALA_Natural REMOVED IN 12.7.0
2 (I,J) Coarse mode seasalt [kg] SALTSRCE all simulations EmisSALC_Natural REMOVED IN 12.7.0

ND09: HCN and CH3CN sources and sinks

Obsolete.jpg

NOTE: The HCN/CH3CN simulation has been removed from GEOS-Chem, thus rendering this diagnostic obsolete. A new HCN/CH3CN simulation may be added to GEOS-Chem sometime in the future.

ND11: Acetone sources and sinks

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND11 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Acetone source from MONOTERPENES [at C/cm2/s] ACETSRCE all fullchem EmisACET_Monoterp REMOVED IN 12.7.0
2 (I,J) Acetone source from METHYL BUTENOL [at C/cm2/s] ACETSRCE all fullchem EmisACET_MethylBut REMOVED IN 12.7.0
3 (I,J) Acetone source from DIRECT BIOGENIC EMISSION [at C/cm2/s] ACETSRCE all fullchem EmisACET_Biogenic REMOVED IN 12.7.0
4 (I,J) Acetone source from OCEANS [at C/cm2/s] ACETSRCE all fullchem EmisACET_Ocean REMOVED IN 12.7.0
5 (I,J) Acetone sink from OCEANS [at C/cm2/s] ACETSRCE all fullchem REMOVED IN 12.7.0

ND12: PBL diagnostics

NOTE: It appears that the implementation of HEMCO has disabled this diagnostic.

ND13: Sulfur emissions

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND13 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Biogenic DMS [kg S] DMS-BIOG all fullchem
aerosol		 EmisDMS_Ocean REMOVED IN 12.7.0
2 (I,J,L) Aircraft SO2 (1 <= L <= ND13) [kg S] SO2-AC-$ all fullchem
aerosol		 REMOVED IN 12.7.0
3 (I,J,L) Anthropognic SO2 (1 <= L <= 2 ) [kg S] SO2-AN-$ all fullchem
aerosol		 REMOVED IN 12.7.0
4 (I,J) Biomass SO2 [kg S] SO2-BIOB all fullchem
aerosol		 REMOVED IN 12.7.0
5 (I,J) Biofuel SO2 [kg S] SO2-BIOF all fullchem
aerosol		 REMOVED IN 12.7.0
6 (I,J,L) Non-eruptive volcano SO2 (1 <= L <= ND13) [kg S] SO2-NV-$ all fullchem
aerosol		 REMOVED IN 12.7.0
7 (I,J,L) Eruptive volcano SO2 (1 <= L <= ND13) [kg S] SO2-EV-$ all fullchem
aerosol		 REMOVED IN 12.7.0
8 (I,J) Ship SO2 [kg S] SO2-SHIP all fullchem
aerosol		 REMOVED IN 12.7.0
9 (I,J,L) Anthropogenic SO4 (1 <= L <= 2 ) [kg S] SO4-AN-$ all fullchem
aerosol		 REMOVED IN 12.7.0
10 (I,J) Biofuel SO4 [kg S] SO4-BIOF all fullchem
aerosol		 REMOVED IN 12.7.0
11 (I,J) Natural NH3 [kg S] NH3-NATU all fullchem
aerosol		 REMOVED IN 12.7.0
12 (I,J) Anthropogenic NH3 [kg] NH3-AN-$ all fullchem
aerosol		 REMOVED IN 12.7.0
13 (I,J) Biomass NH3 [kg] NH3-BIOB all fullchem
aerosol		 REMOVED IN 12.7.0
14 (I,J) Biofuel NH3 [kg] NH3-BIOF all fullchem
aerosol		 REMOVED IN 12.7.0

ND14: Convective mass flux

ND14 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Mass change due to cloud convection [kg/s] CV-FLX-$ all simulations CloudConvFlux_?ADV? REMOVED IN 12.7.0

ND15: Boundary layer mixing mass flux

ND15 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Mass change due to boundary-layer mixing [kg/s] TURBMC-$ all simulations None yet REMOVED IN 12.7.0

ND16: Precipitation fractions

ND16 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Fraction of grid box having rainout + washout (large-scale precip) [unitless] WD-FRC-$ all simulations None yet REMOVED IN 12.7.0
2 (I,J,L) Fraction of grid box having rainout + washout (convectvive precip) [unitless] WD-FRC-$ all simulations None yet REMOVED IN 12.7.0

ND17: Rainout fraction

ND17 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Fraction of soluble tracer lost to rainout (large-scale precip) [unitless] WD-LSR-$ all simulations None yet REMOVED IN 12.7.0
2 (I,J,L,N) Fraction of soluble tracer lost to rainout (convective precip) [unitless] WD-CVR-$ all simulations None yet REMOVED IN 12.7.0

ND18: Washout fraction

ND18 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Fraction of soluble tracer lost to washout (large-scale precip) [unitless] WD-LSW-$ all simulations None yet REMOVED IN 12.7.0
2 (I,J,L,N) Fraction of soluble tracer lost to washout (convective precip) [unitless] WD-CVW-$ all simulations None yet REMOVED IN 12.7.0

ND19: CH4 loss

NOTE: This diagnostic only applies to the CH4 specialty simulation. The bpch diagnostic output is slated to be removed in a future version of GEOS-Chem.

ND19 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) CH4 removal by OH in troposphere kg CH4-LOSS CH4 LossCH4byOHinTrop REMOVED IN 12.7.0
2 (I,J,L) CH4 removal in stratosphere kg CH4-LOSS CH4 LossCH4inStrat REMOVED IN 12.7.0
3 (I,J,L) CH4 removal by Cl in troposphere kg CH4-LOSS CH4 LossCH4byClinTrop REMOVED IN 12.7.0

ND20: Save O3 P/L rates

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND20 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) O3 production rates [kg/m3/s] PORL-L=$ all fullchem Prod_O3 REMOVED IN 12.7.0
2 (I,J,L) O3 loss rates [1/m3/s] PORL-L=$ all fullchem Loss_O3 REMOVED IN 12.7.0

ND21: Cloud diagnostics

NOTE: Some of the netcdf diagnostic names include an asterisk. Also asterisked diagnostics contain WL1, WL2, or WL3 which are replaced with the 1st, 2nd, or 3rd AOD wavelengths respectively in the input.geos Radiation menu at run-time.

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

NOTE: UCX fullchem refers to all full-chemistry simulations that use UCX (i.e. benchmark, standard, aciduptake, marinePOA).

ND21 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) OPTD: Cloud optical depth [unitless] OD-MAP-$ all fullchem
aerosol		 Met_OptD REMOVED IN 12.7.0
2 (I,J,L) CLDTOT: 3-D total cloud fraction (GEOS-4) unitless] OD-MAP-$ all fullchem
aerosol		 Met_CldF REMOVED IN 12.7.0
4 (I,J,L) OPD: Mineral dust optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODDust REMOVED IN 12.7.0
5 (I,J,L) SD: Mineral dust surface area [cm2/cm3] OD-MAP-$ all fullchem
aerosol		 AerSurfAreaDust REMOVED IN 12.7.0
6 (I,J,L) OPSO4: Sulfate optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL1nm_SO4* REMOVED IN 12.7.0
7 (I,J,L) HGSO4: Hygroscopic growth of SO4 [unitless] OD-MAP-$ all fullchem
aerosol		 AerHygroscopicGrowth_SO4 REMOVED IN 12.7.0
8 (I,J,L) SSO4: Sulfate surface area [cm2/cm3] OD-MAP-$ all fullchem
aerosol		 AerSurfArea_SO4 REMOVED IN 12.7.0
9 (I,J,L) OPBC: Black carbon optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL1nm_BCPI* REMOVED IN 12.7.0
10 (I,J,L) HGBC: Hygroscopic growth of BC [unitless] OD-MAP-$ all fullchem
aerosol		 AerHygroscopicGrowth_BCPI REMOVED IN 12.7.0
11 (I,J,L) SBC: Black carbon surface area [cm2/cm3] OD-MAP-$ all fullchem
aerosol		 AerSurfArea_BCPI REMOVED IN 12.7.0
12 (I,J,L) OPOC: Organic carbon optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL1nm_OCPI* REMOVED IN 12.7.0
13 (I,J,L) HGOC: Hygroscopic growth of OC [unitless] OD-MAP-$ all fullchem
aerosol		 AerHygroscopicGrowth_OCPI REMOVED IN 12.7.0
14 (I,J,L) SOC: Organic carbon surface area [cm2/cm3] OD-MAP-$ all fullchem
aerosol		 AerSurfArea_OCPI REMOVED IN 12.7.0
15 (I,J,L) OPSSa: Sea salt (accumulation mode) optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL1nm_SALA* REMOVED IN 12.7.0
16 (I,J,L) HGSSa: Hygroscopic growth of SSa [unitless] OD-MAP-$ all fullchem
aerosol		 AerHygroscopicGrowth_SALA REMOVED IN 12.7.0
17 (I,J,L) SSSa: Sea salt (accumulation mode) surface area [cm2/cm3] OD-MAP-$ all fullchem
aerosol		 AerSurfArea_SALA REMOVED IN 12.7.0
18 (I,J,L) OPSSc: Sea salt (coarse mode) optical depth for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL1nm_SALC* REMOVED IN 12.7.0
19 (I,J,L) HGSSc: Hygroscopic growth of SSc [unitless] OD-MAP-$ all fullchem
aerosol		 AerHygroscopicGrowth_SALC REMOVED IN 12.7.0
20 (I,J,L) SSSc: Sea salt (coarse mode) surface area [cm2/cm3] OD-MAP-$ all fullchem
aerosol		 AerSurfArea_SALC REMOVED IN 12.7.0
21 (I,J,L) OPD1: Dust bin 1 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL1nm_bin1* REMOVED IN 12.7.0
22 (I,J,L) OPD2: Dust bin 2 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL1nm_bin2* REMOVED IN 12.7.0
23 (I,J,L) OPD3: Dust bin 3 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL1nm_bin3* REMOVED IN 12.7.0
24 (I,J,L) OPD4: Dust bin 4 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL1nm_bin4* REMOVED IN 12.7.0
25 (I,J,L) OPD5: Dust bin 5 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL1nm_bin5* REMOVED IN 12.7.0
26 (I,J,L) OPD6: Dust bin 6 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL1nm_bin6* REMOVED IN 12.7.0
27 (I,J,L) OPD7: Dust bin 7 AOD for 1st wavelength specified in Radiation Menu [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL1nm_bin7* REMOVED IN 12.7.0
28 (I,J,L) OPSO4: Sulfate optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL2nm_SO4* REMOVED IN 12.7.0
29 (I,J,L) OPBC: Black carbon optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL2nm_BCPI* REMOVED IN 12.7.0
30 (I,J,L) OPOC: Organic carbon optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL2nm_OCPI* REMOVED IN 12.7.0
31 (I,J,L) OPSSa: Accum. sea salt optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL2nm_SALA* REMOVED IN 12.7.0
32 (I,J,L) OPSSc: Coarse sea salt optical depth for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL2nm_SALC* REMOVED IN 12.7.0
33 (I,J,L) OPD1:Dust bin 1 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL2nm_bin1* REMOVED IN 12.7.0
34 (I,J,L) OPD2: Dust bin 2 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL2nm_bin2* REMOVED IN 12.7.0
35 (I,J,L) OPD3: Dust bin 3 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL2nm_bin3* REMOVED IN 12.7.0
36 (I,J,L) OPD4: Dust bin 4 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL2nm_bin4* REMOVED IN 12.7.0
37 (I,J,L) OPD5: Dust bin 5 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL2nm_bin5* REMOVED IN 12.7.0
38 (I,J,L) OPD6: Dust bin 6 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL2nm_bin6* REMOVED IN 12.7.0
39 (I,J,L) OPD7: Dust bin 7 AOD for 2nd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL2nm_bin7* REMOVED IN 12.7.0
40 (I,J,L) OPSO4: Sulfate optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL3nm_SO4* REMOVED IN 12.7.0
41 (I,J,L) OPBC: Black carbon optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL3nm_BCPI* REMOVED IN 12.7.0
42 (I,J,L) OPOC: Organic carbon optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL3nm_OCPI* REMOVED IN 12.7.0
43 (I,J,L) OPSSa: Accum. sea salt optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL3nm_SALA* REMOVED IN 12.7.0
44 (I,J,L) OPSSc: Coarse sea salt optical depth for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODHygWL3nm_SALC* REMOVED IN 12.7.0
45 (I,J,L) OPD1:Dust bin 1 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL3nm_bin1* REMOVED IN 12.7.0
46 (I,J,L) OPD2:Dust bin 2 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL3nm_bin2* REMOVED IN 12.7.0
47 (I,J,L) OPD3: Dust bin 3 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL3nm_bin3* REMOVED IN 12.7.0
48 (I,J,L) OPD4: Dust bin 4 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL3nm_bin4* REMOVED IN 12.7.0
49 (I,J,L) OPD5: Dust bin 5 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL3nm_bin5* REMOVED IN 12.7.0
50 (I,J,L) OPD6: Dust bin 6 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL3nm_bin6* REMOVED IN 12.7.0
51 (I,J,L) OPD7: Dust bin 7 AOD for 3rd wavelength specified in Radiation Menu (optional) [unitless] OD-MAP-$ all fullchem
aerosol		 AODDustWL3nm_bin7* REMOVED IN 12.7.0
52 (I,J,L) ODSLA: Stratospheric liquid aerosol optical depth (600 nm) (UCX simulation only) [unitless] OD-MAP-$ all fullchem
aerosol		 AODStratLiquidAerWL1nm* REMOVED IN 12.7.0
(I,J,L) Stratospheric liquid aerosol optical depth [unitless] OD-MAP-$ UCX fullchem AODStratLiquidAerWL2nm* REMOVED IN 12.7.0
(I,J,L) Stratospheric liquid aerosol optical depth [unitless] OD-MAP-$ UCX fullchem AODStratLiquidAerWL3nm* REMOVED IN 12.7.0
53 (I,J,L) SASLA: Stratospheric liquid aerosol surface area [cm2/cm3] OD-MAP-$ UCX fullchem AerSurfAreaStratLiquid REMOVED IN 12.7.0
54 (I,J,L) NDSLA: Stratospheric liquid aerosol number density [num/cm3] OD-MAP-$ UCX fullchem AerNumDensitryStratLiquid REMOVED IN 12.7.0
55 (I,J,L) ODSPA: Polar stratospheric cloud type 1a/2 optical depth (600 nm) (UCX simulation only) [unitless] OD-MAP-$ UCX fullchem AODPolarStratCloudWL1nm* REMOVED IN 12.7.0
(I,J,L) Polar stratospheric cloud type 1a/2 optical depth [unitless] OD-MAP-$ UCX fullchem AODPolarStratCloudWL3nm* REMOVED IN 12.7.0
56 (I,J,L) SASPA: Polar stratospheric cloud type 1a/2 surface area [cm2/cm3] OD-MAP-$ UCX fullchem AerSurfAreaPolarStratCloud REMOVED IN 12.7.0
57 (I,J,L) NDSPA: Stratospheric particulate aerosol number density [num/cm3] OD-MAP-$ UCX fullchem AerNumDensitryStratParticulate REMOVED IN 12.7.0
58 (I,J,L) ISOPAOD: SOA from aqueous isoprene optical depth [unitless] OD-MAP-$ benchmark
complexSOA*		 AODSOAfromAqIsopreneWL1* REMOVED IN 12.7.0
(I,J,L) SOA from aqueous isoprene optical depth [unitless] OD-MAP-$ benchmark
complexSOA*		 AODSOAfromAqIsopreneWL2* REMOVED IN 12.7.0
(I,J,L) SOA from aqueous isoprene optical depth [unitless] OD-MAP-$ benchmark
complexSOA*		 AODSOAfromAqIsopreneWL3* REMOVED IN 12.7.0
59 (I,J,L) AQAVOL: Aqueous aerosol volume [cm3/cm3] OD-MAP-$ all fullchem
aerosol		 AerAqueousVolume REMOVED IN 12.7.0

ND22: Photolysis diagnostics

NOTE: Users must specify the GEOS-Chem index, not the ND22 index, for ND22 in the Diagnostic Menu of input.geos.

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND22 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) J(NO2) [1/s] JV-MAP-$ all fullchem Jval_NO2 or JNoon_NO2 REMOVED IN 12.7.0
2 (I,J,L) J(HNO3) [1/s] JV-MAP-$ all fullchem Jval_HNO3 or JNoon_HNO3 REMOVED IN 12.7.0
3 (I,J,L) J(H2O2) [1/s] JV-MAP-$ all fullchem Jval_H2O2 or JNoon_H2O2 REMOVED IN 12.7.0
4 (I,J,L) J(CH2O) [1/s] JV-MAP-$ all fullchem Jval_CH2O or JNoon_CH2O REMOVED IN 12.7.0
5 (I,J,L) J(O3) [1/s] JV-MAP-$ all fullchem Jval_O3 or JNoon_O3 REMOVED IN 12.7.0
6 (I,J,L) J(O3P) (standard and UCX simulations) OR or OH source from O3 photolysis (tropchem and SOA simulations) [1/s] JV-MAP-$ all fullchem Jval_O1D or JNoon_O1d or Jval_O3O1DA or JNoon_O3O1DB REMOVED IN 12.7.0
9 (I,J,L) J(BrO) [1/s] JV-MAP-$ all fullchem Jval_BrO or JNoon_BrO REMOVED IN 12.7.0
10 (I,J,L) J(HOBr) [1/s] JV-MAP-$ all fullchem Jval_HOBr or JNoon_HOBr REMOVED IN 12.7.0
11 (I,J,L) J(BrNO2) [1/s] JV-MAP-$ all fullchem Jval_BrNO2 or JNoon_BrNO2 REMOVED IN 12.7.0
12 (I,J,L) J(BrNO3) [1/s] JV-MAP-$ all fullchem Jval_BrNO3 or JNoon_?PHO? REMOVED IN 12.7.0
13 (I,J,L) J(CHBr3) [1/s] JV-MAP-$ all fullchem Jval_CHBr3 or JNoon_CHBr3 REMOVED IN 12.7.0
14 (I,J,L) J(Br2) [1/s] JV-MAP-$ all fullchem Jval_Br2 or JNoon_Br2 REMOVED IN 12.7.0
15 (I,J,L) J(O2) [1/s] JV-MAP-$ all fullchem Jval_O2 or JNoon_O2 REMOVED IN 12.7.0
16 (I,J,L) J(N2O) [1/s] JV-MAP-$ all fullchem Jval_N2O or JNoon_N2O REMOVED IN 12.7.0
17 (I,J,L) J(NO) [1/s] JV-MAP-$ all fullchem Jval_NO or JNoon_NO REMOVED IN 12.7.0
18 (I,J,L) J(NO3) [1/s] JV-MAP-$ all fullchem Jval_NO3 or JNoon_NO3 REMOVED IN 12.7.0
19 (I,J,L) J(CFC11) [1/s] JV-MAP-$ all fullchem Jval_CFC11 or JNoon_CFC11 REMOVED IN 12.7.0
20 (I,J,L) J(CFC12) [1/s] JV-MAP-$ all fullchem Jval_CFC12 or JNoon_CFC12 REMOVED IN 12.7.0
21 (I,J,L) J(CCl4) [1/s] JV-MAP-$ all fullchem Jval_CCl4 or JNoon_CCl4 REMOVED IN 12.7.0
22 (I,J,L) J(CH3Cl) [1/s] JV-MAP-$ all fullchem Jval_CH3Cl or JNoon_?PHO? REMOVED IN 12.7.0
23 (I,J,L) J(ACET) [1/s] JV-MAP-$ all fullchem Jval_ACET or JNoon_ACET REMOVED IN 12.7.0
24 (I,J,L) J(ALD2) [1/s] JV-MAP-$ all fullchem Jval_ALD2 or JNoon_ALD2 REMOVED IN 12.7.0
25 (I,J,L) J(MVK) [1/s] JV-MAP-$ all fullchem Jval_MVK or JNoon_MVK REMOVED IN 12.7.0
26 (I,J,L) J(MACR) [1/s] JV-MAP-$ all fullchem Jval_MACR or JNoon_MACR REMOVED IN 12.7.0
27 (I,J,L) J(HAC) [1/s] JV-MAP-$ all fullchem Jval_HAC or JNoon_HAC REMOVED IN 12.7.0
28 (I,J,L) J(GLYC) [1/s] JV-MAP-$ all fullchem Jval_GLYC or JNoon_GLYC REMOVED IN 12.7.0
29 (I,J,L) J(PIP) [1/s] JV-MAP-$ all fullchem Jval_PIP or JNoon_PIP REMOVED IN 12.7.0
30 (I,J,L) J(IPMN) [1/s] JV-MAP-$ all fullchem Jval_IPMN or JNoon_IPMN REMOVED IN 12.7.0
31 (I,J,L) J(ETHLN) [1/s] JV-MAP-$ all fullchem Jval_ETHLN or JNoon_ETHLN REMOVED IN 12.7.0
32 (I,J,L) J(DJDM) [1/s] JV-MAP-$ all fullchem Jval_DHDN or JNoon_DHDN REMOVED IN 12.7.0
33 (I,J,L) J(HPALD) [1/s] JV-MAP-$ all fullchem Jval_HPALD or JNoon_HPALD REMOVED IN 12.7.0
34 (I,J,L) J(ISN1) [1/s] JV-MAP-$ all fullchem Jval_ISN1 or JNoon_ISN1 REMOVED IN 12.7.0
35 (I,J,L) J(MONITS) [1/s] JV-MAP-$ all fullchem Jval_MONITS or JNoon_MONITS REMOVED IN 12.7.0
36 (I,J,L) J(MONITU) [1/s] JV-MAP-$ all fullchem Jval_MONITU or JNoon_MONITU REMOVED IN 12.7.0
37 (I,J,L) J(HONIT) [1/s] JV-MAP-$ all fullchem Jval_HONIT or JNoon_JHONIT REMOVED IN 12.7.0
38 (I,J,L) J(CH3Br) [1/s] JV-MAP-$ all fullchem Jval_JCH3Br or JNoon_JCH3Br REMOVED IN 12.7.0
39 (I,J,L) J(BrCl) [1/s] JV-MAP-$ all fullchem Jval_JBrCl or JNoon_JBrCl REMOVED IN 12.7.0
40 (I,J,L) J(CH2Br2) [1/s] JV-MAP-$ all fullchem Jval_JCH2Br2 or JNoon_JCH2Br2 REMOVED IN 12.7.0
41 (I,J,L) J(CH2IBr) [1/s] JV-MAP-$ all fullchem Jval_JCH2IBr or JNoon_JCH2IBr REMOVED IN 12.7.0
42 (I,J,L) J(IBr) [1/s] JV-MAP-$ all fullchem Jval_JIBr or JNoon_JIBr REMOVED IN 12.7.0
43 (I,J,L) J(Cl2) [1/s] JV-MAP-$ all fullchem Jval_JCl2 or JNoon_JCl2 REMOVED IN 12.7.0
44 (I,J,L) J(ClO) [1/s] JV-MAP-$ all fullchem Jval_JClO or JNoon_JClO REMOVED IN 12.7.0
45 (I,J,L) J(OClO) [1/s] JV-MAP-$ all fullchem Jval_JOClO or JNoon_JOClO REMOVED IN 12.7.0
46 (I,J,L) J(Cl2O2) [1/s] JV-MAP-$ all fullchem Jval_JCl2O2 or JNoon_JCl2O2 REMOVED IN 12.7.0
47 (I,J,L) J(ClNO2) [1/s] JV-MAP-$ all fullchem Jval_JClNO2 or JNoon_JClNO2 REMOVED IN 12.7.0
48 (I,J,L) J(ClNO3) [1/s] JV-MAP-$ all fullchem Jval_JClNO3 or JNoon_JClNO3 REMOVED IN 12.7.0
49 (I,J,L) J(HOCl) [1/s] JV-MAP-$ all fullchem Jval_JHOCl or JNoon_JHOCl REMOVED IN 12.7.0
50 (I,J,L) J(CH3CCl3) [1/s] JV-MAP-$ all fullchem Jval_JCH3CCl3 or JNoon_JCH3CCl3 REMOVED IN 12.7.0
51 (I,J,L) J(CFC113) [1/s] JV-MAP-$ all fullchem Jval_JCFC113 or JNoon_JCFC113 REMOVED IN 12.7.0
52 (I,J,L) J(CFC114) [1/s] JV-MAP-$ all fullchem Jval_JCFC114 or JNoon_JCFC114 REMOVED IN 12.7.0
53 (I,J,L) J(CFC115) [1/s] JV-MAP-$ all fullchem Jval_JCFC115 or JNoon_JCFC115 REMOVED IN 12.7.0
54 (I,J,L) J(HCFC123) [1/s] JV-MAP-$ all fullchem Jval_JHCFC123 or JNoon_JHCFC123 REMOVED IN 12.7.0
55 (I,J,L) J(HCFC141b) [1/s] JV-MAP-$ all fullchem Jval_JHCFC141b or JNoon_JHCFC141b REMOVED IN 12.7.0
56 (I,J,L) J(HCFC142b) [1/s] JV-MAP-$ all fullchem Jval_JHCFC142b or JNoon_JHCFC142b REMOVED IN 12.7.0
57 (I,J,L) J(HCFC22) [1/s] JV-MAP-$ all fullchem Jval_JHCFC22 or JNoon_JHCFC22 REMOVED IN 12.7.0
58 (I,J,L) J(H1211) [1/s] JV-MAP-$ all fullchem Jval_JH1211 or JNoon_JH1211 REMOVED IN 12.7.0
59 (I,J,L) J(ClOO) [1/s] JV-MAP-$ all fullchem Jval_JClOO or JNoon_JClOO REMOVED IN 12.7.0
60 (I,J,L) J(CH2Cl2) [1/s] JV-MAP-$ all fullchem Jval_JCH2Cl2 or JNoon_JCH2Cl2 REMOVED IN 12.7.0
61 (I,J,L) J(CH2ICl) [1/s] JV-MAP-$ all fullchem Jval_JCH2ICl or JNoon_JCH2ICl REMOVED IN 12.7.0
62 (I,J,L) J(ICl) [1/s] JV-MAP-$ all fullchem Jval_JICl or JNoon_JICl REMOVED IN 12.7.0
63 (I,J,L) J(I2) [1/s] JV-MAP-$ all fullchem Jval_JI2 or JNoon_JI2 REMOVED IN 12.7.0
64 (I,J,L) J(HOI) [1/s] JV-MAP-$ all fullchem Jval_JHOI or JNoon_JHOI REMOVED IN 12.7.0
65 (I,J,L) J(IO) [1/s] JV-MAP-$ all fullchem Jval_JIO or JNoon_JIO REMOVED IN 12.7.0
66 (I,J,L) J(OIO) [1/s] JV-MAP-$ all fullchem Jval_JOIO or JNoon_JOIO REMOVED IN 12.7.0
67 (I,J,L) J(INO) [1/s] JV-MAP-$ all fullchem Jval_JINO or JNoon_JINO REMOVED IN 12.7.0
68 (I,J,L) J(IONO) [1/s] JV-MAP-$ all fullchem Jval_JIONO or JNoon_JIONO REMOVED IN 12.7.0
69 (I,J,L) J(IONO2) [1/s] JV-MAP-$ all fullchem Jval_JIONO2 or JNoon_JIONO2 REMOVED IN 12.7.0
70 (I,J,L) J(I2O2) [1/s] JV-MAP-$ all fullchem Jval_JI2O2 or JNoon_JI2O2 REMOVED IN 12.7.0
71 (I,J,L) J(CH3I) [1/s] JV-MAP-$ all fullchem Jval_JCH3I or JNoon_JCH3I REMOVED IN 12.7.0
72 (I,J,L) J(CH2I2) [1/s] JV-MAP-$ all fullchem Jval_JCH2I2 or JNoon_JCH2I2 REMOVED IN 12.7.0
73 (I,J,L) J(I2O4) [1/s] JV-MAP-$ all fullchem Jval_JI2O4 or JNoon_JI2O4 REMOVED IN 12.7.0
74 (I,J,L) J(I2O3) [1/s] JV-MAP-$ all fullchem Jval_JI2O3 or JNoon_JI2O3 REMOVED IN 12.7.0
75 (I,J,L) J(H1301) [1/s] JV-MAP-$ all fullchem Jval_JH1301 or JNoon_JH1301 REMOVED IN 12.7.0
76 (I,J,L) J(H2402) [1/s] JV-MAP-$ all fullchem Jval_JH2402 or JNoon_JH2402 REMOVED IN 12.7.0

ND23: Mean OH

This diagnostic prints directly to stdout (which is redirected to the GEOS-Chem log file).

ND24 - ND26: Mass transport flux

For more information about how these diagnostics are defined, please see our Mass Flux (ND24/25/26) wiki page.

ND24 # Dims Description Units Category Simulations netCDF equivalent Notes
ND24 (I,J,L,N) East/west mass flux by transport [kg/s] EW-FLX-$ all simulations REMOVED IN 12.7.0
ND25 (I,J,L,N) North/south mass flux by transport [kg/s] NS-FLX-$ all simulations AdvFluxMerid REMOVED IN 12.7.0
ND26 (I,J,L,N) Up/down mass flux by transport [kg/s] UP-FLX-$ all simulations AdvFluxVert REMOVED IN 12.7.0

ND28: Biomass burning emissions

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND28 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) NO biomass emissions [molec/cm2/s] BIOBSRCE all fullchem EmisNO_BioBurn REMOVED IN 12.7.0
4 (I,J) CO biomass emissions [molec/cm2/s] BIOBSRCE all fullchem
tagCO		 EmisCO_BioBurn REMOVED IN 12.7.0
5 (I,J) ALK4 biomass emissions [atoms C/cm2/s] BIOBSRCE all fullchem EmisALK4_BioBurn REMOVED IN 12.7.0
9 (I,J) ACET biomass emissions [atoms C/cm2/s] BIOBSRCE all fullchem EmisACET_BioBurn REMOVED IN 12.7.0
10 (I,J) MEK biomass emissions [atoms C/cm2/s] BIOBSRCE all fullchem EmisMEK_BioBurn REMOVED IN 12.7.0
11 (I,J) ALD2 biomass emissions [atoms C/cm2/s] BIOBSRCE all fullchem EmisALD2_BioBurn REMOVED IN 12.7.0
18 (I,J) PRPE (lumped >=C3 alkenes) biomass emissions [atoms C/cm2/s] BIOBSRCE all fullchem
CO2
CH4
tagCO
aerosol		 EmisPRPE_BioBurn REMOVED IN 12.7.0
19 (I,J) C3H8 biomass emissions [atoms C/cm2/s] BIOBSRCE all fullchem EmisC3H8_BioBurn REMOVED IN 12.7.0
20 (I,J) CH2O biomass emissions [molec/cm2/s] BIOBSRCE all fullchem EmisCH2O_BioBurn REMOVED IN 12.7.0
21 (I,J) C2H6 biomass emissions [atoms C/cm2/s] BIOBSRCE all fullchem EmisC2H6_BioBurn REMOVED IN 12.7.0
26 (I,J) SO2 biomass emissions [molec/cm2/s] BIOBSRCE all fullchem
aerosol		 EmisSO2_BioBurn REMOVED IN 12.7.0
30 (I,J) NH3 biomass emissions [molec/cm2/s] BIOBSRCE all fullchem
aerosol		 EmisNH3_BioBurn REMOVED IN 12.7.0
34 (I,J) BC (black carbon) biomass emissions [molec/cm2/s] BIOBSRCE all fullchem
aerosol		 EmisBC_BioBurn REMOVED IN 12.7.0
35 (I,J) OC (organic carbon) biomass emissions [molec/cm2/s] BIOBSRCE all fullchem
aerosol		 EmisOC_BioBurn REMOVED IN 12.7.0
69 (I,J) CH4 biomass emissions [molec/cm2/s] BIOBSRCE all fullchem
CH4		 EmisCH4_BioBurn REMOVED IN 12.7.0

ND29: CO sources

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND29 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) CO from anthropogenic emissions [molec/cm2/s] CO--SRCE all fullchem
tagCO		 EmisCO_Anthro REMOVED IN 12.7.0
2 (I,J) CO from biomass burning emissions [molec/cm2/s] CO--SRCE all fullchem
tagCO		 EmisCO_BioBurn REMOVED IN 12.7.0
3 (I,J) CO from biofuel burning emissions [molec/cm2/s] CO--SRCE all fullchem
tagCO		 EmisCO_BioFuel REMOVED IN 12.7.0
4 (I,J) CO produced from methanol (currently not defined) [molec/cm2/s] CO--SRCE all fullchem
tagCO		 none REMOVED IN 12.7.0
5 (I,J) CO produced from monoterpenes [molec/cm2/s] CO--SRCE all fullchem
tagCO		 none REMOVED IN 12.7.0
6 (I,J) CO from ship emissions [molec/cm2/s] CO--SRCE all fullchem
tagCO		 EmisCO_Ship REMOVED IN 12.7.0
For tagged CO simulations only:
7 (I,J) CO from anthropogenic + biofuel emissions over the US [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
8 (I,J) CO from aircraft emissions over the US [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
9 (I,J) CO from ship emissions over the US [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
10 (I,J) CO from anthropogenic + biofuel emissions over Europe [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
11 (I,J) CO from aircraft emissions over Europe [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
12 (I,J) CO from ship emissions over Europe [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
13 (I,J) CO from anthropogenic + biofuel emissions over SE Asia [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
14 (I,J) CO from aircraft emissions over SE Asia [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
15 (I,J) CO from ship emissions over SE Asia [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
16 (I,J) CO from anthropogenic + biofuel emissions elsewhere [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
17 (I,J) CO from aircraft emissions elsewhere [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
18 (I,J) CO from ship emissions elsewhere [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
19 (I,J) CO from biomass burning emissions over South America [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
20 (I,J) CO from biomass burning emissions over Africa [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
21 (I,J) CO from biomass burning emissions over SE Asia [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
22 (I,J) CO from biomass burning emissions over Oceania [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
23 (I,J) CO from biomass burning emissions over Europe [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0
24 (I,J) CO from biomass burning emissions elsewhere [molec/cm2/s] CO--SRCE tagCO REMOVED IN 12.7.0

ND30: Land map

ND30 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) GMAO land-water indices [unitless] LANDMAP REMOVED IN 12.7.0

ND31: Pressure at model edges

ND31 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Pressure at the bottom of level L
(1 <= L <= ND31 )		 [hPa] PEDGE-$ all simulations Met_PEDGE REMOVED IN 12.7.0

ND32: NO emissions

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND32 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) NO aircraft emissions [molec/cm2/s] NO-AC-$ all fullchem EmisNO_Aircraft REMOVED IN 12.7.0
2 (I,J) NO anthropogenic emissions (includes ship) [molec/cm2/s] NO-AN-$ all fullchem EmisNO_Anthro REMOVED IN 12.7.0
3 (I,J) NO biomass burning emissions [molec/cm2/s] NO-BIOB all fullchem EmisNO_BioBurn REMOVED IN 12.7.0
4 (I,J) NO biofuel burning emissions [molec/cm2/s] NO-BIOF all fullchem EmisNO_Biofuel REMOVED IN 12.7.0
5 (I,J) NO fertilizer emissions [molec/cm2/s] NO-FERT all fullchem EmisNO_Fert REMOVED IN 12.7.0
6 (I,J,L) NO lightning emissions [molec/cm2/s] NO-LI-$ all fullchem EmisNO_Lightning REMOVED IN 12.7.0
7 (I,J) NO soil emissions [molec/cm2/s] NO-SOIL all fullchem EmisNO_Soil REMOVED IN 12.7.0

ND34: Biofuel emissions

NOTE: Many of the emissions inventories read into GEOS-Chem by the HEMCO emissions component lump biofuel emissions together with anthropogenic emissions. For such inventories, the contributions from biofuels will be included in the ND36 anthropogenic emissions diagnostic.

ND34 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) NO biofuel emissions [molec/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisNO_Biofuel REMOVED IN 12.7.0
4 (I,J) CO biofuel emissions [molec/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisCO_Biofuel REMOVED IN 12.7.0
5 (I,J) ALK4 biofuel emissions [atoms C/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisALK4_Biofuel REMOVED IN 12.7.0
9 (I,J) ACET biofuel emissions [atoms C/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisACET_Biofuel REMOVED IN 12.7.0
10 (I,J) MEK biofuel emissions [atoms C/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisMEK_Biofuel REMOVED IN 12.7.0
11 (I,J) ALD2 biofuel emissions [atoms C/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisALD2_Biofuel REMOVED IN 12.7.0
18 (I,J) PRPE (lumped >=C3 alkenes) biofuel emissions [atoms C/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisPRPE_Biofuel REMOVED IN 12.7.0
19 (I,J) C3H8 biofuel emissions [atoms C/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisC3H8_Biofuel REMOVED IN 12.7.0
20 (I,J) CH2O biofuel emissions [molec/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisCH2O_Biofuel REMOVED IN 12.7.0
21 (I,J) C2H6 biofuel emissions [atoms C/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisC2H6_Biofuel REMOVED IN 12.7.0
26 (I,J) SO2 biofuel emissions [molec/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisSO2_Biofuel REMOVED IN 12.7.0
30 (I,J) NH3 biofuel emissions [molec/cm2/s] BIOFSRCE all simulations except:
RnPbBe
tagO3		 EmisNH3_Biofuel REMOVED IN 12.7.0

ND36: Anthropogenic emissions

ND36 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) NO anthropogenic emissions [molec/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisNO_Anthro REMOVED IN 12.7.0
4 (I,J) CO anthropogenic emissions [molec/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisCO_Anthro REMOVED IN 12.7.0
5 (I,J) ALK4 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisALK4_Anthro REMOVED IN 12.7.0
9 (I,J) ACET anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisACET_Anthro REMOVED IN 12.7.0
10 (I,J) MEK anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisMEK_Anthro REMOVED IN 12.7.0
11 (I,J) ALD2 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisALD2_Anthro REMOVED IN 12.7.0
18 (I,J) PRPE (lumped >=C3 alkenes) anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisPRPE_Anthro REMOVED IN 12.7.0
19 (I,J) C3H8 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisC3H8_Anthro REMOVED IN 12.7.0
20 (I,J) CH2O anthropogenic emissions [molec/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisCH2O_Anthro REMOVED IN 12.7.0
21 (I,J) C2H6 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisC2H6_Anthro REMOVED IN 12.7.0
69 (I,J) CH4 anthropogenic emissions [atoms C/cm2/s] ANTHSRCE all simulations except:
RnPbBe
tagO3		 EmisCH4_Anthro REMOVED IN 12.7.0

ND37: Fraction of species scavenged in updrafts

ND37 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Fraction of tracer scavenged by in cloud updrafts in moist convection [unitless] MC-FRC-$ all simulations with soluble species WetLossConvFrac_?WET? REMOVED IN 12.7.0

ND38: Loss of species by convection

ND38 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Rainout loss of tracer in convective updrafts [kg/s] WETDCV-$ all simulations with soluble species WetLossConv_?WET? REMOVED IN 12.7.0

ND39: Loss of species by rainout and washout

ND39 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Loss of species in large-scale precip [kg/s] WETDLS-$ all WetLossLS_?WET? REMOVED IN 12.7.0

ND40: Plane flight diagnostic

This diagnostic does not save to the bpch file, but rather is output to the specified plane.log file. See the Planeflight menu for more information.

ND41: Afternoon PBL height

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Afternoon boundary layer heights (1200-1600 local time) [m] PBLDEPTH all simulations None REMOVED IN 12.7.0

ND42: Aerosol mass and PM2.5 diagnostics

NOTE: Some outputs are only defined when the Complex SOA option is turned on (e.g. in benchmark, complexSOA, and complexSOA_SVPOA simulations).

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) TSOA: Aerosol products of terpene oxidation [ug/m3] IJ-SOA-$ benchmark
complexSOA
complexSOA_SVPOA		 AerMassTSOA REMOVED IN 12.7.0
2 (I,J,L) ISOA: Aerosol products of isoprene oxidation [ug/m3] IJ-SOA-$ benchmark
complexSOA
complesSOA_SVPOA		 AerMassISOA REMOVED IN 12.7.0
3 (I,J,L) ASOA: Aerosol products of light aromatics + IVOC oxidation [ug/m3] IJ-SOA-$ benchmark
complexSOA
complesSOA_SVPOA		 AerMassASOA REMOVED IN 12.7.0
4 (I,J,L) POA: Aerosols from SVOCs [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 AerMassPOA REMOVED IN 12.7.0
5 (I,J,L) OPOA: Aerosol products of POG oxidation [ug/m3] IJ-SOA-$ complexSOA_SVPOA AerMassOPOA REMOVED IN 12.7.0
6 (I,J,L) Sum of all organic aerosol [ug/m3] IJ-SOA-$ aerosol
benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 TotalOA REMOVED IN 12.7.0
7 (I,J,L) Sum of all organic carbon [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 TotalOC REMOVED IN 12.7.0
8 (I,J,L) Sum of all biogenic organic aerosol [ug/m3] IJ-SOA-$ benchmark
complexSOA
complexSOA_SVPOA		 TotalBiogenicOA REMOVED IN 12.7.0
9 (I,J,L) BetaNO: NO branching ratio [ug C/m3] IJ-SOA-$ benchmark
complexSOA
complexSOA_SVPOA		 BetaNO REMOVED IN 12.7.0
10 (I,J,L) POA: Aerosols from SVOCs [ug C/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 none REMOVED IN 12.7.0
11 (I,J,L) OPOA: Aerosol products of POG oxidation [ug C/m3] IJ-SOA-$ complexSOA_SVPOA none REMOVED IN 12.7.0
12 (I,J,L) OC: Organic carbon (OCPI + OCPO) [ug C/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 none REMOVED IN 12.7.0
13 (I,J,L) BC: Black carbon (BCPI + BCPO) [ug C/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 AerMassBC REMOVED IN 12.7.0
14 (I,J,L) SO4: Sulfate [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 AerMassSO4 REMOVED IN 12.7.0
15 (I,J,L) NH4: Ammonium [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 AerMassNH4 REMOVED IN 12.7.0
16 (I,J,L) NIT: Nitrate [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 AerMassNIT REMOVED IN 12.7.0
17 (I,J,L) SAL: Sea salt aerosol (SALA + SALC) [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 AerMassSAL REMOVED IN 12.7.0
18 (I,J,L) PM2.5: Particulate matter [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 PM25 REMOVED IN 12.7.0
19 (I,J,L) SOAGX: Aerosol-phase glyoxal [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 AerMassSOAGX REMOVED IN 12.7.0
20 (I,J,L) SOAMG: Aerosol-phase methylglyoxal [ug/m3] IJ-SOA-$ benchmark
standard
tropchem
complexSOA
complexSOA_SVPOA		 AerMassSOAMG REMOVED IN 12.7.0
21 (I,J,L) SOAIE: Aerosol-phase IEPOX [ug/m3] IJ-SOA-$ benchmark
complexSOA
complexSOA_SVPOA		 AerMassSOAIE REMOVED IN 12.7.0
22 (I,J,L) SOAME: Aerosol-phase IMAE [ug/m3] IJ-SOA-$ benchmark
complexSOA
complexSOA_SVPOA		 AerMassSOAME REMOVED IN 12.7.0
23 (I,J,L) INDIOL: Generic aerosol-phase organonitrate hydrolysis product [ug/m3] IJ-SOA-$ benchmark
complexSOA
complexSOA_SVPOA		 AerMassINDIOL REMOVED IN 12.7.0
24 (I,J,L) LVOCOA: Aerosol-phase low-volatility non-IEPOX product of ISOPOOH (RIP) oxidation [ug/m3] IJ-SOA-$ benchmark
complexSOA
complexSOA_SVPOA		 AerMassLVOCOA REMOVED IN 12.7.0
25 (I,J,L) ISN1OA: Aerosol-phase 2nd generation hydroxynitrates formed from ISOP+NO3 reaction pathway [ug/m3] IJ-SOA-$ benchmark
complexSOA
complexSOA_SVPOA		 AerMassISN1OA REMOVED IN 12.7.0

ND43: Chemical production of OH and HO2

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

NOTE: UCX fullchem refers to all full-chemistry simulations that use UCX (i.e. benchmark, standard, aciduptake, marinePOA).

ND43 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) OH [molec/cm3] CHEM-L=$ all fullchem
CH4		 OHconcAfterChem REMOVED IN 12.7.0
3 (I,J,L) HO2 [v/v] CHEM-L=$ all fullchem HO2concAfterChem REMOVED IN 12.7.0
4 (I,J,L) O1D [molec/cm3] CHEM-L=$ UCX fullchem O1DconcAfterChem REMOVED IN 12.7.0
5 (I,J,L) O3P [molec/cm3] CHEM-L=$ UCX fullchem O3PconcAfterChem REMOVED IN 12.7.0
6 (I,J,L) LBRO2H [molec/cm3] CHEM-L=$ none REMOVED IN 12.0.0
7 (I,J,L) LBRO2N [molec/cm3] CHEM-L=$ none REMOVED IN 12.0.0
8 (I,J,L) LTRO2H [molec/cm3] CHEM-L=$ none REMOVED IN 12.0.0
9 (I,J,L) LTRO2N [molec/cm3] CHEM-L=$ none REMOVED IN 12.0.0
10 (I,J,L) LXRO2H [molec/cm3] CHEM-L=$ none REMOVED IN 12.0.0
11 (I,J,L) LXRO2N [molec/cm3] CHEM-L=$ none REMOVED IN 12.0.0

ND44: Dry deposition diagnostics

ND44 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,M) Dry deposition fluxes (M = 1, State_Chm%nDryDep) [molec/cm2/s] DRYD-FLX all simulations with dry-depositing species DryDep_?DRY? REMOVED IN 12.7.0
2 (I,J,M) Dry deposition velocities (M = 1, State_Chm%nDryDep) [cm/s] DRYD-VEL all simulations with dry-depositing species DryDepVel_?DRY? REMOVED IN 12.7.0

ND45: Species concentrations

ND45 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Species mixing ratio for Levels = 1, LD45, averaged between HR1_OTH and HR2_OTH (time range from input.geos) [v/v] IJ-AVG-$ all simulations SpeciesConc_?ADV?
SpeciesConc_?AER?
SpeciesConc_?ALL?
SpeciesConc_?DRY?
SpeciesConc_?FIX?
SpeciesConc_?GAS?
SpeciesConc_?KPP?
SpeciesConc_?PHO?
SpeciesConc_?VAR?
SpeciesConc_?WET?
 REMOVED IN 12.7.0

ND46: Biogenic emissions

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) ISOP: Isoprene [atoms C/cm2/s] BIOGSRCE all fullchem EmisISOP_Biogenic REMOVED IN 12.7.0
2 (I,J) ACET: Acetone [atoms C/cm2/s] BIOGSRCE all fullchem EmisACET_Biogenic REMOVED IN 12.7.0
3 (I,J) PRPE: Lumped >= C3 alkenes [atoms C/cm2/s] BIOGSRCE all fullchem EmisPRPE_Biogenic REMOVED IN 12.7.0
4 (I,J) MONX: Total monoterpenes
(APIN + BPIN + LIMO + SABI + MYRC + CARE + OCIM + OMON)		 [atoms C/cm2/s] BIOGSRCE all fullchem EmisMONX_Biogenic REMOVED IN 12.7.0
5 (I,J) MBOX: Methyl Butenol [atoms C/cm2/s] BIOGSRCE all fullchem EmisMBOX_Biogenic REMOVED IN 12.7.0
6 (I,J) C2H4: Ethene [atoms C/cm2/s] BIOGSRCE all fullchem EmisC2H4_Biogenic REMOVED IN 12.7.0
7 (I,J) APIN: a-Pinene [atoms C/cm2/s] BIOGSRCE all fullchem EmisAPIN_Biogenic REMOVED IN 12.7.0
8 (I,J) BPIN: b-Pinene [atoms C/cm2/s] BIOGSRCE all fullchem EmisBPIN_Biogenic REMOVED IN 12.7.0
9 (I,J) LIMO: Limonene [atoms C/cm2/s] BIOGSRCE all fullchem EmisLIMO_Biogenic REMOVED IN 12.7.0
10 (I,J) SABI: Sabinene [atoms C/cm2/s] BIOGSRCE all fullchem EmisSABI_Biogenic REMOVED IN 12.7.0
11 (I,J) MYRC: Myrcene [atoms C/cm2/s] BIOGSRCE all fullchem EmisMYRC_Biogenic REMOVED IN 12.7.0
12 (I,J) CARE: 3-Carene [atoms C/cm2/s] BIOGSRCE all fullchem EmisCARE_Biogenic REMOVED IN 12.7.0
13 (I,J) OCIM: Ocimene [atoms C/cm2/s] BIOGSRCE all fullchem EmisOCIM_Biogenic REMOVED IN 12.7.0
14 (I,J) FAXX: Formic acid (currently not activated) [molec/cm2/s] BIOGSRCE all fullchem EmisFAXX_Biogenic REMOVED IN 12.7.0
15 (I,J) AAXX: Acetic acid (currently not activated) [molec/cm2/s] BIOGSRCE all fullchem EmisAAXX_Biogenic REMOVED IN 12.7.0
16 (I,J) ALD2: Acetaldehyde [atoms C/cm2/s] BIOGSRCE all fullchem EmisALD2_Biogenic REMOVED IN 12.7.0
17 (I,J) OMON: Other monoterpenes [atoms C/cm2/s] BIOGSRCE all fullchem EmisOMON_Biogenic REMOVED IN 12.7.0
18 (I,J) MOHX: Methanol (currently not activated) [molec/cm2/s] BIOGSRCE all fullchem EmisMOHX_Biogenic REMOVED IN 12.7.0
19 (I,J) ETOH: Ethanol (currently not activated) [atoms C/cm2/s] BIOGSRCE all fullchem EmisETOH_Biogenic REMOVED IN 12.7.0
20 (I,J) FARN: Farnesene [atoms C/cm2/s] BIOGSRCE all fullchem EmisFARN_Biogenic REMOVED IN 12.7.0
21 (I,J) BCAR: b-Caryophyllene [atoms C/cm2/s] BIOGSRCE all fullchem EmisBCAR_Biogenic REMOVED IN 12.7.0
22 (I,J) OSQT: Other sesquiterpenes [atoms C/cm2/s] BIOGSRCE all fullchem EmisOSQT_Biogenic REMOVED IN 12.7.0
23 (I,J) CHBr3: Ocean bromoform emissions [kg/m2/s] BIOGSRCE all fullchem EmisCHBr3_Biogenic REMOVED IN 12.7.0
24 (I,J) CH2Br2: Ocean dibromomethane emissions [kg/m2/s] BIOGSRCE all fullchem EmisCH2Br2_Biogenic REMOVED IN 12.7.0
25 (I,J) Br2: Sea-salt Br2 emissions [kg/m2/s] BIOGSRCE all fullchem EmisBr2_Biogenic REMOVED IN 12.7.0
26 (I,J) CH4: Methane [molec/c2/s] BIOGSRCE all fullchem
CH4		 EmisCH4_Biogenic REMOVED IN 12.7.0

ND47: 24h average concentrations

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Daily (24-h) average tracer mixing ratio for Levels = L, LD47 [v/v] IJ-24H-$ all simulations SpeciesConc REMOVED IN 12.7.0

ND48: Station timeseries

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1-N (I,J,L) GEOS-Chem advected species number for GAMAP = 1, nAdvect [v/v] IJ-AVG-$ all simulations REMOVED IN 12.7.0
501 (I,J,L) OH concentration (Tracer # for GAMAP = 1) [molec/cm3] TIME-SER all simulations REMOVED IN 12.7.0
502 (I,J,L) NOy concentration (Tracer # for GAMAP = 2) [v/v] TIME-SER all simulations REMOVED IN 12.7.0
503 (I,J,L) Relative humidity (Tracer # for GAMAP = 3) [%] TIME-SER all simulations REMOVED IN 12.7.0
504 (I,J,L) 3-D Cloud fractions (Tracer # for GAMAP = 4) [unitless] TIME-SER all simulations REMOVED IN 12.7.0
505 (I,J) Column optical depths (Tracer # for GAMAP = 5) [unitless] TIME-SER all simulations REMOVED IN 12.7.0
506 (I,J) Cloud top heights (Tracer # for GAMAP = 6) [hPa] TIME-SER all simulations REMOVED IN 12.7.0
507 (I,J,L) Air density (Tracer # for GAMAP = 7) [molec/cm3] TIME-SER all simulations REMOVED IN 12.7.0
508 (I,J,L) Total sea salt tracer concentration (Tracer # for GAMAP = 8) [unitless] TIME-SER all simulations REMOVED IN 12.7.0
509 (I,J) PBL heights (Tracer # for GAMAP = 1) [m] PBLDEPTH all simulations REMOVED IN 12.7.0
510 (I,J) PBL heights (Tracer # for GAMAP = 2) [levels] PBLDEPTH all simulations REMOVED IN 12.7.0
511 (I,J,L) Grid box height (Tracer # for GAMAP = 1) [m] BXHGHT-$ all simulations REMOVED IN 12.7.0
512 (I,J,L) Pressure at level edges (Tracer # for GAMAP = 1) [hPa] PEDGE-$ all simulations REMOVED IN 12.7.0
513 (I,J) Sea level pressure (Tracer # for GAMAP = 18) [hPa] DAO-FLDS all simulations REMOVED IN 12.7.0
514 (I,J,L) Zonal wind (a.k.a. U-wind) (Tracer # for GAMAP = 1) [m/s] DAO-3D-$ all simulations REMOVED IN 12.7.0
515 (I,J,L) Meridional wind (a.k.a. V-wind) (Tracer # for GAMAP = 2) [m/s] DAO-3D-$ all simulations REMOVED IN 12.7.0
516 (I,J,L) Temperature (Tracer # for GAMAP = 3) [K] DAO-3D-$ all simulations REMOVED IN 12.7.0
517 (I,J,L) Sulfate aerosol optical depth (Tracer # for GAMAP = 6) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
518 (I,J,L) Black carbon aerosol optical depth (Tracer # for GAMAP = 9) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
519 (I,J,L) Organic carbon aerosol optical depth (Tracer # for GAMAP = 12) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
520 (I,J,L) Accumulation mode seasalt optical depth (Tracer # for GAMAP = 15) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
521 (I,J,L) Coarse mode seasalt optical depth (Tracer # for GAMAP = 18) [unitless] OD-MAP_$ all simulations REMOVED IN 12.7.0
522 (I,J,L) Total dust optical depth (Tracer # for GAMAP = 4) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
523-529 (I,J,L) Size resolved dust optical depth (Tracer # for GAMAP = 21-27) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0

ND49: Instantaneous timeseries

ND49 # Dims Description Units Category Simulations netCDF equivalent Notes
1-N (I,J,L) GEOS-Chem advected species number for GAMAP = 1, nAdvect [v/v] IJ-AVG-$ all simulations REMOVED IN 12.7.0
501 (I,J,L) OH concentration (Tracer # for GAMAP = 1) [molec/cm3] TIME-SER all simulations SpeciesConc_OH REMOVED IN 12.7.0
502 (I,J,L) NOy concentration (Tracer # for GAMAP = 2) [v/v] TIME-SER all simulations REMOVED IN 12.7.0
503 (I,J,L) Relative humidity (Tracer # for GAMAP = 3) [%] TIME-SER all simulations Met_RH REMOVED IN 12.7.0
504 (I,J,L) 3-D Cloud fractions (Tracer # for GAMAP = 4) [unitless] TIME-SER all simulations Met_CLDF REMOVED IN 12.7.0
505 (I,J) Column optical depths (Tracer # for GAMAP = 5) [unitless] TIME-SER all simulations REMOVED IN 12.7.0
506 (I,J) Cloud top heights (Tracer # for GAMAP = 6) [hPa] TIME-SER all simulations Met_CLDTOPS REMOVED IN 12.7.0
507 (I,J,L) Air density (Tracer # for GAMAP = 7) [molec/cm3] TIME-SER all simulations Met_AIRDEN (dry)
Met_MAIRDEN (moist)		 REMOVED IN 12.7.0
508 (I,J,L) Total sea salt tracer concentration (Tracer # for GAMAP = 8) [unitless] TIME-SER all simulations REMOVED IN 12.7.0
509 (I,J) PBL heights (Tracer # for GAMAP = 1) [m] PBLDEPTH all simulations REMOVED IN 12.7.0
510 (I,J) PBL heights (Tracer # for GAMAP = 2) [levels] PBLDEPTH all simulations REMOVED IN 12.7.0
511 (I,J,L) Grid box height (Tracer # for GAMAP = 1) [m] BXHGHT-$ all simulations Met_BXHEIGHT REMOVED IN 12.7.0
512 (I,J,L) Pressure at level edges (Tracer # for GAMAP = 1) [hPa] PEDGE-$ all simulations Met_PEDGE REMOVED IN 12.7.0
513 (I,J) Sea level pressure (Tracer # for GAMAP = 18) [hPa] DAO-FLDS all simulations Met_SLP REMOVED IN 12.7.0
514 (I,J,L) Zonal wind (a.k.a. U-wind) (Tracer # for GAMAP = 1) [m/s] DAO-3D-$ all simulations Met_U REMOVED IN 12.7.0
515 (I,J,L) Meridional wind (a.k.a. V-wind) (Tracer # for GAMAP = 2) [m/s] DAO-3D-$ all simulations Met_V REMOVED IN 12.7.0
516 (I,J,L) Temperature (Tracer # for GAMAP = 3) [K] DAO-3D-$ all simulations Met_T REMOVED IN 12.7.0
517 (I,J,L) Sulfate aerosol optical depth (Tracer # for GAMAP = 6) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
518 (I,J,L) Black carbon aerosol optical depth (Tracer # for GAMAP = 9) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
519 (I,J,L) Organic carbon aerosol optical depth (Tracer # for GAMAP = 12) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
520 (I,J,L) Accumulation mode seasalt optical depth (Tracer # for GAMAP = 15) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
521 (I,J,L) Coarse mode seasalt optical depth (Tracer # for GAMAP = 18) [unitless] OD-MAP_$ all simulations REMOVED IN 12.7.0
522 (I,J,L) Total dust optical depth (Tracer # for GAMAP = 4) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
523-529 (I,J,L) Size resolved dust optical depth (Tracer # for GAMAP = 21-27) [unitless] OD-MAP-$ all simulations REMOVED IN 12.7.0
530 (I,J) PARDF (diffuse PAR) (Tracer # for GAMAP = 20) [W/m2] DAO-FLDS all simulations Met_PARDF REMOVED IN 12.7.0
531 (I,J) PARDR (direct PAR) (Tracer # for GAMAP = 21) [W/m2] DAO-FLDS all simulations Met_PARDR REMOVED IN 12.7.0
532 (I,J) Daily LAI (leaf area index) (Tracer # for GAMAP = 9) [cm2/cm2] all simulations TIME-SER Met_XLAI REMOVED IN 12.7.0
533 (I,J) Temperature at 2m (i.e. proxy for surface air temperature) (Tracer # for GAMAP = 5) [K] DAO-FLDS all simulations Met_T2M REMOVED IN 12.7.0
534 (I,J) Accumulated precipitation (Tracer # for GAMAP = 3) [mm/day] DAO-FLDS all simulations Met_PRECTOT REMOVED IN 12.7.0

ND50: 24h average timeseries

This diagnostic archives the the same diagnostic quantities as ND49 (listed above)

NOTE: Any field of the State_Chm, State_Diag, or State_Met objects can be sent to a netcdf time-averaged collection with a frequency of 24 hours.

ND51 and ND51b: Satellite timeseries

This diagnostic rchives the the same diagnostic quantities as ND49 (listed above)

NOTE: There is no netCDF-equivalent diagnostic in GEOS-Chem 12. Possibly in a subsequent version.

ND52: Gamma HO2

Obsolete.jpg

NOTE: This diagnostic is mostly obsolete. We now set this value in the Chemistry Menu of input.geos.

ND53: POPs diagnostics

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Total POPs emissions kg/m2/s PG-SRCE POPS NOTE: Units changed from kg to kg/m2/s in GEOS-Chem 12.1.0
2 (I,J) POP OC emissions kg/m2/s PG-SRCE POPS EmisPOPPPOCPO " "
3 (I,J) POP BC emissions kg/m2/s PG-SRCE POPS EmisPOPPBCPO " "
4 (I,J) Gas-phase POPs emissions kg/m2/s PG-SRCE POPS EmisPOPG " "
5 (I,J) Secondary emissions from soil kg/m2/s PG-SRCE POPS EmisPOPGfromSoil " "
6 (I,J) Secondary emissions from lakes kg/m2/s PG-SRCE POPS EmisPOPGfromLake " "
7 (I,J) Secondary emissions from leaves kg/m2/s PG-SRCE POPS EmisPOPGfromLeaf " "
8 (I,J) Secondary positive soil flux ng/m2/day PG-SRCE POPS FluxPOPGfromSoilToAir
9 (I,J) Secondary negative soil flux ng/m2/day PG-SRCE POPS FluxPOPGfromAirToSoil
10 (I,J) Secondary positive lake flux ng/m2/day PG-SRCE POPS FluxPOPGfromLakeToAir
11 (I,J) Secondary negative lake flux ng/m2/day PG-SRCE POPS FluxPOPGfromAirToLake
12 (I,J) Secondary positive leaf flux ng/m2/day PG-SRCE POPS FluxPOPGfromLeafToAir
13 (I,J) Secondary negative leaf flux ng/m2/day PG-SRCE POPS FluxPOPGfromAirToLeaf
14 (I,J) Fugacity ratios soil/air 1 PG-SRCE POPS FugacitySoilToAir
15 (I,J) Fugacity ratios lake/air 1 PG-SRCE POPS FugacityLakeToAir
16 (I,J) Fugacity ratios leaf/air 1 PG-SRCE POPS FugacityLeafToair
17 (I,J,L) Gross POP OC lost to gas kg/s PG-PP POPS LossPOPPOCPObyGasPhase NOTE: Units changed from kg to kg/s in GEOS-Chem 12.1.0
18 (I,J,L) Gross POP OC formed from gas kg/s PG-PP POPS ProdPOPPOCPOfromGasPhase " "
19 (I,J,L) Gross POP BC lost to gas kg/s PG-PP POPS LossPOPPBCPObyGasPhase " "
20 (I,J,L) Gross POP BC formed from gas kg/s PG-PP POPS ProdPOPPBCPOfromGasPhase " "
21 (I,J,L) Production of oxidized POPG from reaction with OH kg/s PG-PP POPS ProdPOPGfromOH " "
22 (I,J,L) Production of oxidized POPOCPO from reaction with O3 kg/s PG-PP POPS ProdPOPPOCPOfromO3 " "
23 (I,J,L) Production of oxidized POPOCPI from reaction with O3 kg/s PG-PP POPS ProdPOPPOCPIfromO3 " "
24 (I,J,L) Production of oxidized POPBCPO from reaction with O3 kg/s PG-PP POPS ProdPOPPBCPOfromO3 " "
25 (I,J,L) Production of oxidized POPBCPI from reaction with O3 kg/s PG-PP POPS ProdPOPPBCPIfromO3 " "
26 (I,J,L) Production of oxidized POPOCPO from reaction with NO3 kg/s PG-PP POPS ProdPOPPOCPOfromNO3 " "
27 (I,J,L) Production of oxidized POPOCPI from reaction with NO3 kg/s PG-PP POPS ProdPOPPOCPIfromNO3 " "
28 (I,J,L) Production of oxidized POPBCPO from reaction with NO3 [kg] PG-PP POPS ProdPOPPBCPOfromNO3 " "
29 (I,J,L) Production of oxidized POPBCPI from reaction with NO3 [kg] PG-PP POPS ProdPOPPBCPIfromNO3 " "

--Bob Yantosca (talk) 21:49, 17 October 2018 (UTC)

ND54: Time in troposphere

ND54 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Computes the amount of time that a given grid box spends in the troposphere [1] TIME-TPS all simulations FracOfTimeInTrop

ND55: Tropopause diagnostics

ND55 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Level at which the dynamic tropopause occurs [unitless] TR-PAUSE all simulations Met_TROPLEV
2 (I,J) Height of the dynamic tropopause [km] TR-PAUSE all simulations Met_TROPHT
3 (I,J) Pressure of the dynamic tropopause [mb] TR-PAUSE all simulations Met_TROPP

ND56: Lightning diagnostics

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND56 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Total lightning flash rate [flashes/min/km2] LFLASH-$ all fullchem
2 (I,J) Intra-cloud flash rate [flashes/min/km2] LFLASH-$ all fullchem
3 (I,J) Cloud-ground flash rate [flashes/min/km2] LFLASH-$ all fullchem
4 (I,J) Lightning cloud top height [level] LFLASH-$ all fullchem

ND57: Potential temperature

ND57 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Potential temperature [K] THETA-$ all simulations Met_THETA

ND58: CH4 emissions

Obsolete.jpg

NOTE: In GEOS-Chem 12.0.0 and higher, these diagnostics are archived by HEMCO. The ND58 diagnostic was deactivated in GEOS-Chem 12.1.0.

ND58 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) CH4-TOT: Total emissions kg CH4-EMIS CH4 EmisCH4_Total Now archived in the HEMCO_diagnostics*.nc files, as kg/m2/s
2 (I,J) CH4-GAO: Gas & Oil emissions kg CH4-EMIS CH4 EmisCH4_Oil " "
3 (I,J) CH4-COL: Coal emisisons kg CH4-EMIS CH4 EmisCH4_Gas " "
4 (I,J) CH4-LIV: Livestock emissions kg CH4-EMIS CH4 EmisCH4_Livestock " "
5 (I,J) CH4-WST: Waste emisisons kg CH4-EMIS CH4 EmisCH4_Wastewater " "
6 (I,J) CH4-BFL: Biofuel emissions kg CH4-EMIS CH4 EmisCH4_Biofuel " "
7 (I,J) CH4-RIC: Rice field emissions kg CH4-EMIS CH4 EmisCH4_Rice " "
8 (I,J) CH4-OTA: Other anthropogenic emissions kg CH4-EMIS CH4 EmisCH4_OtherAnth " "
9 (I,J) CH4-BBN: Biomass burning emissions kg CH4-EMIS CH4 EmisCH4_BiomassBurn " "
10 (I,J) CH4-WTL: Wetland emissions kg CH4-EMIS CH4 EmisCH4_Wetlands " "
11 (I,J) CH4-SAB: Soil absorption kg CH4-EMIS CH4 EmisCH4_Seeps " "
12 (I,J) CH4-OTN: Other natural emissions kg CH4-EMIS CH4 EmisCH4_SoilAbsorb " "

ND59: TOMAS size-resolved aerosol emissions

ND59 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Size-resolved primary aerosol number emission [No.] NK-EMISS TOMAS
2 (I,J,L) Size-resolved primary aerosol sulfate mass emission [kg S] SF-EMIS TOMAS
3 (I,J,L) Size-resolved primary aerosol sea-salt emission [kg] SS-EMIS TOMAS
4 (I,J,L) Size-resolved primary Hydrophillic EC mass emission [kg] ECIL-SRC TOMAS
5 (I,J,L) Size-resolved primary Hydrophobic EC mass emission [kg] ECOB-SRC TOMAS
6 (I,J,L) Size-resolved primary Hydrophillic OC mass emission [kg] OCIL-SRC TOMAS
7 (I,J,L) Size-resolved primary Hydropobic OC mass emission [kg] OCOB-SRC TOMAS
8 (I,J,L) Size-resolved dust mass emission [kg] DUST-SRC TOMAS

ND60

TOMAS simulations: Aerosol microphysics rate

ND0 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Condensation rate [no.] or [kg] TMS-COND TOMAS
2 (I,J,L) Coagulation rate [no.] or [kg] TMS-COAG TOMAS
3 (I,J,L) Nucleation rate [no.] or [kg] TMS-NUCL TOMAS
4 (I,J,L) Aqueous oxidation rate [no.] or [kg] TMS-AQOX TOMAS
5 (I,J,L) Accumulated error fixed [no.] or [kg] AERO-FIX TOMAS
6 (I,J,L) SOA condensation rate [no.] or [kg] TMS-SOA TOMAS

Non-TOMAS simulations: Wetland fraction

Obsolete.jpg

NOTE: In GEOS-Chem 12, the CH4 simulation now reads wetland emissions from disk. Therefore wetland emissions are now archived via the HEMCO diagnostics facility, making the ND60 diagnostic obsolete.

ND59 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Wetland fraction unitless WET-FRAC CH4 EmisCH4_Wetlands Archived to HEMCO diagnostics as kg/m2/s

ND61: TOMAS 3-D rate

ND61 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Particle Dp >10 nm formation rate [cm-3s-1] TOMAS-3D TOMAS
2 (I,J,L) Nucleation rate (cluster size) [cm-3s-1] TOMAS-3D TOMAS

ND62: Instantaneous columns

Obsolete.jpg

ND62 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,N) I-J instantaneous integrated column density for tracers [molec/cm2] or
[atoms C/cm2]		 INST-MAP all simulations none Removed in 12.0.0

ND63: Ship emission diagnostics

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND63 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) Fraction of NOx remaining unitless SHIP-$$$ all fullchem
2 (I,J) Integrated Ozone Production Efficiency (OPE) unitless SHIP-$$$ all fullchem
3 (I,J) Ship plume NOx remaining [molec/cm2/s] SHIP-$$$ all fullchem
4 (I,J) Ship plume Ox production [molec/cm2/s] SHIP-$$$ all fullchem
5 (I,J) Ship NOx emissions [molec/cm2/s] SHIP-$$$ all fullchem

ND64: Radiative flux

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND64 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) Net UV flux in bin [W/m2] FJX-FLUX all fullchem NOTE: Might be broken
2 (I,J,L) Direct UV flux in bin [W/m2] FJX-FLUX all fullchem NOTE: Might be broken
3 (I,J,L) Diffuse UV flux in bin [W/m2] FJX-FLUX all fullchem NOTE: Might be broken

ND65: Chemical production and loss diagnostics

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND65 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L,N) Chemical family P/L rates. See the FlexChem wiki page for more information. [molec/cm3/s] PORL-L=$ all fullchem
tagCO
tagO3		 Prod_?PRD?
Loss_?LOS?

ND66: GMAO 3-D met fields

NOTE: Any field of the State_Met object can be saved out to netCDF diagnostic output files under the diagnostic name: Met_<fieldname>.

ND66 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) UWND : U-winds [m/s] DAO-3D-$ all simulations Met_U
2 (I,J,L) VWND : V-winds [m/s] DAO-3D-$ all simulations Met_V
3 (I,J,L) TMPU : Temperature [K] DAO-3D-$ all simulations Met_T
4 (I,J,L) SPHU : Specific humidity [g H20/kg air] DAO-3D-$ all simulations Met_SPHU
5 (I,J,L) CMFMC: Convective Mass Flux [kg/m2/s] DAO-3D-$ all simulations Met_CMFMC NOTE: Met_CMFMC must be placed into a netCDF collection defined on level edges
6 (I,J,L) DTRAIN : Detrainment Flux [kg/m2/s] DAO-3D-$ all simulations Met_DTRAIN

ND67: GMAO 2-D met fields

NOTE: Any field of the State_Met object can be saved out to netCDF diagnostic output files under the diagnostic name: Met_<fieldname>.

ND67 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) HFLUX: sensible heat flux from surface [W/m2] DAO-FLDS all simulations Met_HFLUX
2 (I,J) RADSWG: solar radiation at the ground [W/m2] DAO-FLDS all simulations Met_RADSWG
3 (I,J) PRECTOT: total precipitation at the ground [mm/day] DAO-FLDS all simulations Met_PRECTOT
4 (I,J) PRECCON: total convective precipitation at the ground [mm/day] DAO-FLDS all simulations Met_PRECCON
5 (I,J) TS: surface air temperature
For GEOS-4, GEOS-5, and MERRA, this is reall simulationsy the air temperature at 2 m altitude above the surface.		 [K] DAO-FLDS all simulations Met_TS
6 (I,J) RADSWT: solar radiation at the top of the atmosphere [W/m2] DAO-FLDS all simulations Met_RADSWT
7 (I,J) USTAR: friction velocity [m/s] DAO-FLDS all simulations Met_USTAR
8 (I,J) Z0: surface roughness height [m] DAO-FLDS all simulations Met_Z0
9 (I,J) PBL (aka PBLM): planetary boundary layer depth [m] DAO-FLDS all simulations Met_PBL
10 (I,J) CLDFRC: column cloud fraction [0 - 1] DAO-FLDS all simulations Met_CLDFRC
11 (I,J) U10M: U-winds at 10 meters altitude [m/s] DAO-FLDS all simulations Met_U10M
12 (I,J) V10M: V-winds at 10 meters altitude [m/s] DAO-FLDS all simulations Met_V10M
13 (I,J) PS-PBL: Boundary Layer Top Pressure [hPa] DAO-FLDS all simulations None
14 (I,J) ALBD: Surface Albedo [unitless] DAO-FLDS all simulations Met_ALBD
15 (I,J) PHIS: Geopotential Heights [m] DAO-FLDS all simulations Met_PHIS
16 (I,J) CLTOP : Cloud Top Height [levels] DAO-FLDS all simulations Met_CLDTOPS
17 (I,J) TROPP: Tropopause pressure [hPa] DAO-FLDS all simulations Met_TROPP
18 (I,J) SLP: Sea Level pressure (read directly from the met fields) [hPa] DAO-FLDS all simulations Met_SLP
19 (I,J) TSKIN : Ground / Sea Surface Temp [K] DAO-FLDS all simulations Met_TSKIN
20 (I,J) PARDF : Photosyntheticall simulationsy active diffuse radiation [W/m2] DAO-FLDS all simulations Met_PARDF
21 (I,J) PARDR : Photosyntheticall simulationsy active direct radiation [W/m2] DAO-FLDS all simulations Met_PARDR
22 (I,J) GWETTOP: Top soil wetness [unitless] DAO-FLDS all simulations Met_GWETTOP
23 (I,J) EFLUX: Latent heat flux [W/m2] DAO-FLDS all simulations Met_EFLUX

ND68: Air mass and related quantities

NOTE: Any field of the State_Met object can be saved out to netCDF diagnostic output files under the diagnostic name: Met_<fieldname>.

ND68 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,L) BXHEIGHT: Grid box heights [m] BXHGHT-$ all simulations Met_BXHEIGHT
2 (I,J,L) AD: Air mass in grid box [kg] BXHGHT-$ all simulations Met_AD
3 (I,J,L) AVGW : Mixing ratio of water vapor [v/v] BXHGHT-$ all simulations Met_AVGW
4 (I,J,L) AIRNUMDEN: Air number density [molec air/cm3] BXHGHT-$ all simulations Met_AIRNUMDEN
5 (I,J,L) T: Temperature [K] BXHGHT-$ all simulations Met_T
6 (I,J,L) PMID: Pressure at average pressure level [hPa] BXHGHT-$ all simulations Met_PMID
7 (I,J,L) PEDGE: Presure at grid box lower edge [hPa] BXHGHT-$ all simulations Met_PEDGE
8 (I,J,L) RH: Relative humidity [%] BXHGHT-$ all simulations Met_RH

ND69: Surface areas

ND69 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J) DXYP: grid box surface areas [m2] DXYP all simulations AREA Surface area in m2 is written to each netCDF diagnostic file created by HEMCO or History; no need to request it explicitly

ND70: Print debug output

This diagnostic does not print to bpch or netCDF, but toggles debug printout to the GEOS-Chem log file.

ND71: Hourly maximum mixing ratio

ND71 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,N) Hourly maximum tracer mixing ratio at the surface [v/v] IJ-MAX-$ all simulations None Not included in GEOS-Chem 12

ND72: RRTMG diagnostics

ND72 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,N) All-sky TOA short-wave radiation W/m2 RADMAP-$ RRTMG RadAllSkySWTOA Still TBA
2 (I,J,N) All-sky surface short-wave radiation W/m2 RADMAP-$ RRTMG RadAllSkySWSurf Still TBA
3 (I,J,N) All-sky TOA long-wave radiation W/m2 RADMAP-$ RRTMG RadAllSkyLWTOA Still TBA
4 (I,J,N) All-sky surface long-wave radiation W/m2 RADMAP-$ RRTMG RadAllSkyLWSurf Still TBA
5 (I,J,N) Clear-sky TOA short-wave radiation W/m2 RADMAP-$ RRTMG RadClrSkySWTOA Still TBA
6 (I,J,N) Clear-sky surface short-wave radiation W/m2 RADMAP-$ RRTMG RadClrSkySWSurf Still TBA
7 (I,J,N) Clear-sky TOA long-wave radiation W/m2 RADMAP-$ RRTMG RadClrSkyLWTOA Still TBA
8 (I,J,N) Clear-sky surface long-wave radiation W/m2 RADMAP-$ RRTMG RadClrSkyLWSurf Still TBA

ND73: ISORROPIA diagnostics

NOTE: All fullchem refers to all simulations that use a full-chemistry mechanism (i.e. benchmark, complexSOA*, standard, tropchem. aciduptake, marinePOA, RRTMG, TOMAS).

ND73 # Dims Description Units Category Simulations netCDF equivalent Notes
1 (I,J,N) ISORROPIA aerosol pH 1 ISOROP-$ all fullchem
aerosol		 Chem_PHSAV Stored in State_Chm%PHSAV
2 (I,J,N) ISORROPIA H+ concentration [M] ISOROP-$ all fullchem
aerosol		 Chem_HPLUSAV Stored in State_Chm%HPLUSSAV
3 (I,J,N) ISORROPIA aerosol water [μg/m3] ISOROP-$ all fullchem
aerosol		 Chem_WATERSAV Stored in State_Chm%WATERSAV
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