HEMCO data directories
NOTE: Page under construction
Contents
- 1 Overview
- 2 HEMCO data directory structure
- 2.1 Aerosols
- 2.2 Anthropogenic and biofuel emissions
- 2.3 Anthropogenic aircraft and ship emissions
- 2.4 Biomass burning emissions
- 2.5 Emissions implemented as HEMCO extensions
- 2.6 Future and historical emissions
- 2.7 GEOS-Chem specialty simulation data
- 2.8 Seawater concentrations
- 2.9 Stratospheric data
- 2.10 Other inputs for HEMCO
- 3 Downloading the HEMCO data directories
Overview
HEMCO data directory structure
In the following sections we list the directory structure containing emissions inventories and related data files for use with HEMCO. Each data directory is referenced relative to the HEMCO root directory, which is specified by $ROOT token.
For example, on the Harvard disk server, the value of $ROOT is /mnt/gcgrid/data/ExtData/HEMCO/. All of the data files read by HEMCO are stored in subfolders of this root directory.
--Bob Y. 13:06, 12 February 2015 (EST)
Aerosols
Inventory | Path | Status |
---|---|---|
AEROCOM volcanic emissions | $ROOT/VOLCANO/v2014-10 | CURRENTLY USED |
Tami Bond et al BC and OC emissions | $ROOT/BCOC_BOND/v2014-07 | CURRENTLY USED |
Cooke et al BC and OC emissions | $ROOT/BCOC_COOKE/v2014-07 | CURRENTLY USED |
Secondary organic aerosols | $ROOT/HEMCO/SOA/2014-07 | CURRENTLY USED |
--Bob Y. 11:50, 12 February 2015 (EST)
Anthropogenic and biofuel emissions
Inventory | Path | Status |
---|---|---|
GEIA global anthropogenic | $ROOT/GEIA/v2014-07 | Slated for replacement |
GEIA NH3 (anthro, biofuel, natural source) | $ROOT/NH3/v2014-07 | CURRENTLY USED
|
EDGAR global anthropogenic | $ROOT/EDGAR/v2014-07 | CURRENTLY USED |
RETRO VOC emissions | $ROOT/RETRO/v2014-07 | CURRENTLY USED |
Yevich & Logan biofuels | $ROOT/BIOFUEL/v2014-07 | CURRENTLY USED |
BRAVO regional anthropogenic | $ROOT/BRAVO/v2014-07 | CURRENTLY USED |
CAC regional anthropogenic | $ROOT/CAC/v2014-07 | CURRENTLY USED |
EMEP regional anthropogenic | $ROOT/EMEP/v2015-01 | CURRENTLY USED |
NEI2005 regional anthro/biofuel | $ROOT/NEI2005/v2014-09 | CURRENTLY USED |
NEI/VISTAS scale factors | $ROOT/VISTAS/v2014-07 | CURRENTLY USED |
Streets regional anthro | $ROOT/STREETS/v2014-07 | CURRENTLY USED |
MASAGE agricultural NH3 | $ROOT/MASAGE_NH3/v2015-02 | CURRENTLY USED |
Yaping Xiao et al C2H6 and C3H8 anthropogenic | $ROOT/XIAO/v2014-09 | CURRENTLY USED |
--Bob Y. 14:07, 12 February 2015 (EST)
Anthropogenic aircraft and ship emissions
Inventory | Path | Status |
---|---|---|
AEIC aircraft | $ROOT/AEIC/v2014-10 | CURRENTLY USED |
ARCTAS ship emissions | $ROOT/ARCTAS_SHIP/v2014-07 | CURRENTLY USED |
Corbett et al ship emissions | $ROOT/VOLCANO/v2014-10 | CURRENTLY USED |
ICOADS ship | $ROOT/ICOADS_SHIP/v2014-07 | CURRENTLY USED |
--Bob Y. 14:07, 12 February 2015 (EST)
Biomass burning emissions
Inventory | Path | Status |
---|---|---|
GFED3 biomass | $ROOT/GFED3/v2014-10 | CURRENTLY USED
|
FINN biomass | $ROOT/FINN/v2015-02 | OPTIONAL
|
QFED biomass | $ROOT/QFED/v2014-09 | OPTIONAL
|
GFED2 biomass | $ROOT/GFED2/v2014-07 | OBSOLETE
|
Duncan et al biomass | $ROOT/BIOBURN/v2014-07 | OBSOLETE
|
--Bob Y. 14:08, 12 February 2015 (EST)
Emissions implemented as HEMCO extensions
Inventory | Path | Status |
---|---|---|
DEAD dust model | $ROOT/DUST_DEAD/2014-07 | CURRENTLY USED |
GINOUX dust model | $ROOT/DUST_GINOUX/2014-07 | CURRENTLY USED |
MEGAN biogenic emissions | $ROOT/MEGAN/v2014-07 | CURRENTLY USED |
NO from lightning | $ROOT/LIGHTNOX/v2014-07 | CURRENTLY USED |
NO from soils/fertilizers | $ROOT/SOILNOX/v2014-07 | CURRENTLY USED |
PARANOX ship plume model | $ROOT/PARANOX/v2014-07 | CURRENTLY USED |
--Bob Y. 14:09, 12 February 2015 (EST)
Future and historical emissions
Inventory | Path | Status |
---|---|---|
RCP future scenarios | $ROOT/RCP/RCP26 | STILL BEING IMPLEMENTED |
--Bob Y. 12:40, 12 February 2015 (EST)
GEOS-Chem specialty simulation data
Inventory | Path | Status |
---|---|---|
Aerosol-only simulation | $ROOT/OFFLINE_AEROSOL/v2014-09 | CURRENTLY USED |
CH4 simulation | $ROOT/CH4/v2014-09 | CURRENTLY USED |
CO2 simulation | $ROOT/CO2/v2014-09 | CURRENTLY USED |
Mercury simulation | $ROOT/MERCURY/v2014-09/ | CURRENTLY USED |
POPs simulation | $ROOT/POPs/v2014-09 | CURRENTLY USED |
Tagged CO simulation | $ROOT/TAGGED_CO/v2014-08 | CURRENTLY USED |
Tagged O3 simulation | $ROOT/TAGGED_O3/v2014-09 | CURRENTLY USED |
O3 for offline simulations | $ROOT/O3/v2014-09/ | CURRENTLY USED |
OH for offline simulations | $ROOT/OH/v2014-09 | CURRENTLY USED |
H2O2 for offline simulations | $ROOT/OXIDANTS/v2014-07 | CURRENTLY USED |
CH3I simulation | $ROOT/CH3I/v2014-07 | OBSOLETE |
--Bob Y. 12:53, 12 February 2015 (EST)
Seawater concentrations
Inventory | Path | Status |
---|---|---|
Acetone seawater | $ROOT/ACET/v2014-07 | CURRENTLY USED |
DMS seawater | $ROOT/DMS/v2014-07 | CURRENTLY USED |
--Bob Y. 12:55, 12 February 2015 (EST)
Stratospheric data
Inventory | Path | Status |
---|---|---|
Stratospheric Bry data | $ROOT/STRAT/v2015-01 | CURRENTLY USED |
--Bob Y. 12:58, 12 February 2015 (EST)
Other inputs for HEMCO
Inventory | Path | Status |
---|---|---|
Annual scale factors | $ROOT/AnnualScalar/v2014-07 | CURRENTLY USED |
Mask files | $ROOT/MASKS/v2014-07 | CURRENTLY USED |
MAP_A2A regridding data | $ROOT/MAP_A2A/v2014-07 | CURRENTLY USED |
Timezone offsets from UTC | $ROOT/TIMEZONES/v2015-02 | Will debut in GEOS-Chem v10-01 |
Weekly scale factors | $ROOT/WEEKSCALE/v2014-07 | CURRENTLY USED |
--Bob Y. 12:59, 12 February 2015 (EST)
Downloading the HEMCO data directories
The GEOS-Chem Support Team has created a package called hemco_data_download. With this package, you can download the various emissions inventories and related data files for HEMCO to your own disk server. Furthermore, you can specify which data directories that you would like to download (as well as those you would like to ignore) via a configuration file.
Obtaining the hemco_data_download package
To obtain the hemco_data_download package, use Git to clone this repository
git clone https://github.com/GCST/hemco_data_download.git
This will create a directory named hemco_data_download, in which you should see the following files:
- README
- File with an overall description of the directory contents
- hemcoDataDownload.pl
- Perl script to download HEMCO data directories
- hemcoDataDownload.rc
- Configuration file for the hemcoDataDownload.pl script. In this file you can specify which HEMCO data directories you would like to download and which you would like to omit.
- forTesting.rc
- A configuration file that you can use for testing or debugging. This will tell hemcoDataDownload.pl only to download a couple of emissions inventories with files that do not take up much disk space.
--Bob Y. 13:58, 12 February 2015 (EST)
Setting up the configuration file
The configuration files (i.e. hemcoDataDownload.rc and forTesting.rc) are pretty much self-explanatory.
At the top of the configuration file you will see this section:
############################################################################### # # # Specify the remote and local HEMCO data paths, plus other options. # # # ############################################################################### Remote HEMCO data path | ftp://ftp.as.harvard.edu/gcgrid/data/ExtData/HEMCO Your HEMCO data path | /as/scratch/bmy/HEMCO Verbose output | yes Dryrun only? | no
- Remote HEMCO data path is the location on the FTP server from which you are going to download the data. This can be from either Harvard or from Dalhousie. (For now we will use the Harvard server). You can edit this accordingly.
- Your HEMCO data path specifies the root-level directory for HEMCO data on your own disk space. If you are not sure where to place this, then ask your sysadmin.
- Verbose output lets you specify if you want to print out extra output during the download process. This can be set to either "yes" or "no".
- Dryrun only flag allows you to print out the data download commands without actually downloading the data. This is useful for debugging.
In the next section you specify all of the HEMCO inventories that you want to download. You will see this header:
############################################################################### # # # THE FOLLOWING DATA DIRECTORIES WILL BE DOWNLOADED. # # # # These data directories comprise the recommended emissions configuration # # for typical GEOS-Chem full-chemistry and specialty simulations. # # # ############################################################################### #=============================+================================================ # AEROSOLS | Directory paths #=============================+================================================ AEROCOM volcano emissions | $ROOT/VOLCANO/v2014-10 Bond et al BC/OC | $ROOT/BCOC_BOND/v2014-07 Cooke et al BC/OC | $ROOT/BCOC_COOKE/v2014-07 Secondary organic aerosols | $ROOT/SOA/v2014-07 ... etc ...
Each line specifies the name of a HEMCO emissions inventory and the data path where it can be found on disk, relative to the root data path. NOTE: The script will replace the $ROOT token with the value you gave to the "HEMCO remote data path" above. (Lines starting with the comment character # will be ignored.)
Any inventory found in this section will be downloaded. To prevent an inventory from being downloaded you can either comment it out (i.e. place a # in the first column) or move the inventory to the next section.
The final section specifies HEMCO emission inventories that you do not wish to download. The section looks like this:
############################################################################### # # # THE FOLLOWING DATA DIRECTORIES WILL NOT BE DOWNLOADED. # # # # These data directories contain are optional emissions inventories that # # are not used in typical GEOS-Chem simulations. If you wish to download # # any of these inventories, simply move the corresponding entry for each # # inventory to the previous section. # # # ############################################################################### CH3I simulation (obsolete) | $ROOT/CH3I/v2014-07 Chlorophyll A | $ROOT/CHLA/v2014-07 ... etc ...
--Bob Y. 13:55, 12 February 2015 (EST)
Downloading the data
Once you have set up your configuration file, you can run the hemcoDataDownload.pl script to start downloading the HEMCO data to your local server. To run the script you can type:
hemcoDataDownload.pl
If you do not specify a configuration file name, then the hemcoDataDownload.pl scriptwill read the default configuration file hemcoDataDownload.rc configuration file. If you wish to specify a different configuration file name, simply pass that as an argument to the script, e.g.
hemcoDataDownload.pl myNewConfigFile.rc
Before you start downloading GB's of data, we recommend that you run a short test to make sure that the data directories are being copied to the proper locations on your disk server. For this purpose, we have provided a configuration file named forTesting.rc. Typing
hemcoDataDownload.pl forTesting.pl
will only download a couple of data inventories that do not take up much disk space. This allows you to ensure that the data transfer is sucessful without making you wait a long time.
--Bob Y. 13:57, 12 February 2015 (EST)