GAMAP tips and tricks
Date and time
Julian Day vs. Astronomical Julian Day
The Julian Day (JD) is used to denote the number of days that have elapsed since the start of a year. For example, the Julian Day number of 2008/01/10 is 10 (since it is the 10th day of 2008).
However, another term that is sometimes confused with the Julian Day is the Astronomical Julian Day (AJD). This is the number of days that have elapsed since 12:00 GMT on January 1, 4713 BC. The Astronomical Julian Day at 00:00 GMT on 2008/01/10 is 2454475.5.
The Astronomical Julian Day is mostly used in astrophysics and space sciences to compute long intervals of time that may span many years (e.g. the period of a variable star, etc.). You can find algorithms for computing AJD in several textbooks, including Practical Astronomy with Your Calculator by Peter Duffett-Smith, Cambridge Univ. Press, 1992.
The chief advantage of using the Astronomical Julian Day is that its computation accounts for the end-of-month, end-of-year, end-of-century, and end-of-millenium transitions. For example, if you want to compute what the date will be 1000 days from 2008/01/01, then all you have to do is:
- compute the Astronomical Juliay Day for 2008/01/01
- add 1000
- convert back to a calendar date
Doing this computation we find that 1000 days after 2008/01/01 is 2010/09/27. NOTE: This also accounted for the leap-year-day on Feb 29, 2008.
IDL has two Astronomical Julian Day functions
- JULDAY -- converts a year, month, day (, hour, min, sec) to Astronomical Julian Date
- CALDAT -- converts an Astronomical Julian Day back to year, month, day (, hour, min, sec)
and they are called as follows:
; Compute the Astronomical Julian Day for 2008/01/10
; Note: the day is required, the hours, mins, seconds are optional
IDL> print, julday( 1, 10, 2008, 0, 0, 0 )
2454475.5
; Convert the Astronomical Julian Day back to a calendar date
IDL> caldat, 2454475.5, y, m, d, h, mi, s
IDL> print, y, m, d, h, mi, s
1 10 2008 0 0 0.0000000
Therefore, in order to avoid confusion, we recommend that you refer to the number of days in a year as "Day of Year" rather than Julian Day.
--Bob Yantosca 15:40, 3 April 2008 (EDT)
Computing the day of year from a calendar date (and vice-versa)
A quick way to compute the day of the year is w/ IDL's JULDAY function:
Day_of_Year = JULDAY( Month, Day, Year ) - JULDAY( 1, 0, Year )
For example:
IDL> print, julday( 1, 10, 2008 ) - julday( 1, 0, 2008 )
10
JULDAY( 1, 0, 2008 ) is essentially 12/31/2007. This is used so that you don't have to add one to the above difference. (This is equivalent to JULDAY( 1, 10, 2008 ) - JULDAY( 1, 1, 2008 ) + 1.)
This is essentially done for you in the GAMAP function ~/IDL/gamap2/date_time/day_of_year.pro. You could replace the above code with:
IDL> print, day_of_year( 1, 10, 2008 )
10
To compute the calendar date from the day of the year (the inverse operation), you can use IDL's CALDAT function. However, you must also add the Astronomical Julian day for the first of the year, for example:
IDL> caldat, julday( 1, 0, 2008 )+10, y, m, d
IDL> print, y, m, d
1 10 2008
You can also do this with the GAMAP functions DAY_OF_YEAR and ADD_DATE, as follows
; Convert month/day/year to day of year
IDL> doy = day_of_year( 1, 10, 2008 )
IDL> print, doy
10
; convert day of year back to month/day/year
IDL> print, add_date( 20080101, 10-1 )
20080110
The only thing to remember is you have to subtract 1 from the day of year due to the way that ADD_DATE is written.
NOTE: Starting in GAMAP v2-12 (not released yet), you will be able to specify a single YYYYMMDD argument instead of the month, day, year arguments:
; Convert month/day/year to day of year IDL> doy = day_of_year( 20080110 )
--Bob Yantosca 15:40, 3 April 2008 (EDT)
Combining output from timeseries files
Ray Nassar (ray@io.as.harvard.edu) wrote:
- I just have a quick question, is there any GAMAP routine that can average all hourly data blocks in a timeseries file to make a single daily average bpch file?
- It appears like I could use the average option of ctm_sum.pro but I do not quite understand where the averaged data goes and afterwards would still have to write to bpch.
Philippe Le Sager (plesager@seas.harvard.edu) replied:
- Check the
/gamap2/timeseries/gc_combine_nd49.pro /gamap2/timeseries/gc_combine_nd48.pro
- routines, which combines daily bpch files (nd48 & nd49 output, but also met field input files) into 4D data blocks. It has many options. You can extract a subset of data according to time and/or location, or process the data (moving average, daily max, shift to local time). You can either save the data into a new bpch file or just get an array of data in output.
- I wrote a tutorial that gives some pointers here.
- -Philippe
--Bob Yantosca 09:43, 1 April 2008 (EDT)
Memory management and CTM_MAKE_DATAINFO
When using CTM_MAKE_DATAINFO, you create few pointers and allocate memory to pointed data. Three scenarios to free that memory are possible.
(1) By default, GAMAP keeps track of the pointers in a global structure, and you can clean up the memory by calling CTM_CLEANUP (with or without the keyword /NO_GC):
ctm_make_datainfo(data, ...)
CTM_WriteBpch, DataInfo, FileInfo, FileName=file
ctm_cleanup
(2) If you use the keyword /NO_GLOBAL when calling CTM_MAKE_DATAINFO, the story is a little bit more subtle. Now, GAMAP has no idea of the created pointers. If you use CTM_CLEANUP without the keyword /NO_GC, everything is clean up because there is a call to heap_gc. But you are also loosing **all other** pointers and objects.
ctm_make_datainfo(data, ..., /No_global)
CTM_WriteBpch, DataInfo, FileInfo, FileName=file
ctm_cleanup
Note if you do not call ctm_cleanup or call it with /No_GC, then the memory allocated by CTM_MAKE_DATAINFO is still allocated and the pointers that refers to it are alive... until you exit the routine (unless they are passed back). Once you are out of the routine, this memory remains allocated but is useless since unaccessible, in other words you have memory leak.
(3) So, if you want to keep some objects and/or pointers alive in your code (i.e., you do not want to call heap_gc or ctm_cleanup,/no_gc), you need to free only the created pointers as follows:
ctm_make_datainfo(data, datainfo, fileinfo, ..., /No_global)
CTM_WriteBpch, DataInfo, FileInfo, FileName=file
ptr_free, DataInfo.data
ptr_free, fileinfo.gridinfo
To free only the heap memory created by multiple calls to CTM_MAKE_DATAINFO, the procedure is:
for D=0L, NTracers-1L do begin
Success = CTM_Make_DataInfo( Data[*,*,D], DataInfo, FileInfo, ..., /No_Global )
ArrDataInfo = D eq 0l ? [ DataInfo ] : [ ArrDataInfo, DataInfo ]
if D ne Ntracers-1l then ptr_free, Fileinfo.gridinfo
endfor
CTM_WriteBpch, ArrDataInfo, FileInfo, FileName=OutFileName
for d=0, n_elements(ArrDataInfo)-1l do ptr_free, ArrDataInfo[d].data
ptr_free, fileinfo.gridinfo
--Philippe Le Sager 10:28, 13 February 2008