Difference between revisions of "Bugs and fixes"
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On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. | On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them. | ||
− | Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more information about | + | Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more general information about some frequently encountered errors. |
== Issues resolved in GEOS-Chem v9-01-02 == | == Issues resolved in GEOS-Chem v9-01-02 == |
Revision as of 18:04, 28 November 2011
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
Please also be sure to visit our Common GEOS-Chem error messages wiki page for more general information about some frequently encountered errors.
Contents
- 1 Issues resolved in GEOS-Chem v9-01-02
- 2 Issues resolved in GEOS-Chem v9-01-01
- 3 Issues resolved in GEOS-Chem v8-03-02
- 4 Issues resolved in GEOS-Chem v8-03-01
- 5 Issues resolved in GEOS-Chem v8-02-04
- 6 Issues resolved in GEOS-Chem v8-02-03
- 7 Issues resolved in GEOS-Chem v8-02-02
- 8 Issues resolved in GEOS-Chem v8-02-01
- 9 Issues resolved in GEOS-Chem v8-01-04
- 10 Issues resolved in GEOS-Chem v8-01-03
- 11 Issues resolved in GEOS-Chem v8-01-02
- 12 Issues resolved in GEOS-Chem v8-01-01
- 13 Issues resolved in GEOS-Chem v7-04-13
- 14 Issues resolved in GEOS-Chem v7-04-10
Issues resolved in GEOS-Chem v9-01-02
- Corrected mis-indexing error in partition.f caused by the dynamic tropopause
- Corrected out-of-bounds error in readchem.f
- Fix for mis-indexing issue in CSPEC restart file
- Various bug fixes for the offline Hg simulation
- Bug fixes for leap years when using GCAP met fields
- Minor bug fixes for emissions routines affecting offline simulations
- Minor bug fixes for emissions routines affecting offline simulations
- Fixes for better compatibility with the PGI compiler
- Washout fix for non-aerosol species
- Fix for GEIA emissions scaling factor over Botswana
- Fixed minor issues in MERRA cloud convection routine
- Fix for vertical regridding of offline OH for offline simulations
- Further bug fixes for the offline Hg simulation
- Further fixes for nested-grid simulations
- Fix for partitioning chemical species
- Bug fixes for biofuel emissions
- Fix bug in EDGAR ship emissions code
- Bug fix for ship NOx emissions
- Prevent out-of-bounds errors in ND01 and ND02 diagnostics (Rn-Pb-Be simulation)
- Do not use erroneous MEGAN AEF data for nested-grid simulations
--Melissa Payer 12:08, 21 November 2011 (EST)
--Bob Y. 12:05, 28 November 2011 (EST)
Issues resolved in GEOS-Chem v9-01-01
- Standardization of patches from v8-03-02
- Bug fix for biofuels in EPA/NEI05
- Important bug fixes for ship emissions
- Duplicate diagnostics
- Starting runs at times other than 00 GMT
- Fix ND15 for non-local PBL scheme
- Fix to prevent div-by-zero in sulfate_mod.f
- PEDGE-$ in timeseries diagnostics
- Running offline simulations on the GEOS-5 72L grid
- Fixes to improve efficiency in vdiff_mod.f90
- Typos in megan_mod.f
- Typos in edgar_mod.f
--Bob Y. 11:25, 18 February 2011 (EST)
Issues resolved in GEOS-Chem v8-03-02
- Fix for EPA/NEI 2005 emissions
- Minor fixes in gamap_mod.f
- Bug fix for ND42 diagnostic and ISORROPIA II
- Minor fix for AOD calculation
- Avoid using unallocated arrays in edgar_mod.f
- Transport fix for GEOS-5 nested grid simulations
--Bob Y. 16:53, 7 September 2010 (EDT)
Issues resolved in GEOS-Chem v8-03-01
- Patch to enable call to SOA PARA INIT
- Patch to fix declaration of IONIC in ISORROPIA_II
- Patch to fix bug in Aromatic SOA
- Patch to scale AOD diagnostic output to other wavelengths
- Photolysis now computed at midpoint of chemistry timestep
- Bug fix in ISORROPIA for offline aerosol
- Minor bug fix in SRCSO2
- Bug in GET_EMMONOT_MEGAN
- Bug in READ_ANTHRO_NH3
- Fix for initialization of EMEP ship emissions
- Bug fix in AVGPOLE
- Bug fix in EMITHIGH (carbon_mod.f)
- Fix to prevent numerical overflow in EXP function
--Bob Y. 15:05, 30 June 2010 (EDT)
Issues resolved in GEOS-Chem v8-02-04
- Memory issue with KPP
- Updated reactions in sulfate_mod.f
- Bug fix for EMEP ship emissions
- Minor fix for molecular weights in drydep_mod.f
- Bug fix in biomass_mod.f
- Minor bug fix in gamap_mod.f
- Fixes and updates in seasalt_mod.f
- Bug fix in emfossil.f for 0.5 x 0.666 nested grid tagged-CO option
- Bug fix in DIAG20 (diag_pl_mod.f)
- Div-by-zero error encountered in arsl1k.f
- Fix for diagnostic arrays in TPCORE
- MEGAN now uses MODIS LAI by default
--Bob Y. 16:29, 23 February 2010 (EST)
Issues resolved in GEOS-Chem v8-02-03
- Patch for KPP solver for v8-02-03
- Corrected Bond et al BC/OC emissions
- Several bug fixes in sulfate_mod.f
- Missing NOx data in S.E.-Asia
- Mis-calculation of Courant numbers in tpcore_fvdas_mod.f90
- Format problem in planeflight_mod.f
--Bob Y. 16:55, 4 February 2010 (EST)
Issues resolved in GEOS-Chem v8-02-02
- EPA/NEI inventory: reset other species to zero
- Scale factor for oceanic acetone for GEOS5 2x2.5 was fixed in GEOS-Chem v8-02-02.
- Bug with PRIVATE declaration in sulfate_mod.f
- Bug with online 2ndary aerosol
- Typo in HO2 uptake
--Bob Y. 16:40, 11 January 2010 (EST)
Issues resolved in GEOS-Chem v8-02-01
- Output selected tracers only for dry and wet deposition, convection and rain diagnotics
- On-the-fly regridding for 0.5x0.667 nested grids
- Bug with EMEP ship emissions for nested grids
- Bug in sulfate_mod.f to turn off biomass emissions
- Minor error in gamap_mod.f
- Bug fix for Streets emissions on 0.5x0.666 nested grid
--Bob Y. 09:55, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v8-01-04
- Seg fault in GEOS-5 China nested grid simulation
- Error message in partition.f
- Erroneous O3 diagnostic (ND45)
- Post-Release Patches
--Bob Y. 09:58, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v8-01-03
- TPCORE replaced with version based on GMI model
- Output of ND51 does not match output in the ctm.bpch file
- ND22 (J-value) diagnostic
- ND34 (biofuel emissions) diagnostic
- Change of location of calls to diagnostics in main.f
--Bob Y. 10:29, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v8-01-02
- Quick fix for GEOS-5 optical depth
- Please see the discussion about this quick fix for the GEOS-5 optical depths.
- NOTE: if you are using GEOS-Chem v8-01-04 or higher with the reprocessed GEOS-5 met fields, then you do not need to use this quick fix.
- Corrected labeling of SOA quantities in carbon_mod.f
- Double-substitution error in GET_ALK
- Robustness fix for reading anthropogenic SO2 and NH3
- Minor bug in gasconc.f & calcrate.f
- Minor bug in emfossil.f
- Fix for mass balance of HNO3 and NIT
- Bug in ND43
- Problem w/ ND65 diagnostic and dynamic tropopause
- Albedo diagnostic in GEOS-4
- Pressure diagnostic : PS-PTOP vs. PEDGE
- Minor bug in log file output
--Bob Y. 10:29, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v8-01-01
--Bob Y. 10:35, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v7-04-13
--Bob Y. 10:49, 12 January 2010 (EST)
Issues resolved in GEOS-Chem v7-04-10
--Bob Y. 10:53, 12 January 2010 (EST)