Benchmark/GEOS-Chem 12.8.0: Difference between revisions
Line 210: | Line 210: | ||
|-valign="top" | |-valign="top" | ||
|Use online MEGAN, DustDead, and SoilNOx emissions for benchmark simulations | |Use online MEGAN, DustDead, SeaSalt, and SoilNOx emissions for benchmark simulations | ||
|Melissa Sulprizio (GCST) | |Melissa Sulprizio (GCST) | ||
Line 309: | Line 309: | ||
'''[https://www.atmos-chem-phys.net/19/9613/2019/ Isoprene chemistry]''' | '''[https://www.atmos-chem-phys.net/19/9613/2019/ Isoprene chemistry]''' | ||
:This update introduced several new advected species | :This update introduced several new advected species: | ||
::HMHP, ETP, HPETHNL, HCOOH, PYAC, ATOOH, ETHLN, MCRHN, MCRHNB, R4P, RP, RA3P, RB3P, PIP, PP, RIPA, RIPB, RIPC, RIPD, IEPOXA, IEPOXB, IEPOXD, ICHE, HC5A, HMML, HPALD1, HPALD2, HPALD3, HPALD4, IDC, IHN1, IHN2, IHN3, IHN4, INPB, INPD, IDN, ICN, ITCN, ITHN, ICPDH, IDCHP, IDHDP, IDHPE, MVKDH, MVKHC, MVKHCB, MVKHP, MVKPC, MCRDH, MCRENOL, MCRHP, MACR1OOH | |||
:and removed several species: | |||
::NPMN, ISOPND, ISOPNB, MOBA, MACRN, IMAE, SOAME, SOAMG, ISN1OG, ISN1OA, IPMN, HC187 | |||
:The [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.8.0/GCC/Plots/benchmark_categories.yml benchmark categories] have been updated to account for these changes, following recommendations from Kelvin Bates. | |||
:For remarks on impacts caused by these changes, please see [https://github.com/geoschem/geos-chem/pull/142 this discussion on Github]. | |||
:NOTE: There are large changes observed in AOD from isoprene SOA in this version. These changes are partially due to removing some species that were included in the isoprene SOA calculation in aerosol_mod.F, but are mainly due to [https://github.com/geoschem/geos-chem/issues/208 the bug fix for the AOD from isoprene SOA diagnostic] that went into [[GEOS-Chem_12#12.7.1|GEOS-Chem 12.7.1]]. | |||
'''Use online DustDead, MEGAN, SeaSalt, and SoilNOx emissions for benchmark simulations''' | |||
:The entries below from the [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.8.0/GCC/Plots/Emissions/Emission_totals.txt emissions tables by species]] show differences caused by turning the DustDead, MEGAN, SeaSalt, and SoilNOx extensions back on in benchmark simulations. These changes are similar, but of the opposite sign, to the changes observed in the [[Benchmark/GEOS-Chem_12.4.0#GEOS-Chem_Classic_1-month_benchmark|GEOS-Chem 12.4.0 benchmark]] when offline emissions were implemented. | |||
############################################################################### | |||
### Emissions totals ### | |||
### Ref = GC_12.7.0; Dev = GC_12.8.0 ### | |||
############################################################################### | |||
Ref Dev Dev - Ref | |||
DST1 Natural : 9.550223 3.400091 -6.150131 Tg | |||
DST2 Natural : 23.987765 8.540177 -15.447588 Tg | |||
DST3 Natural : 43.524575 15.495716 -28.028860 Tg | |||
DST4 Natural : 47.613968 16.951628 -30.662340 Tg | |||
... | |||
ACET Biogenic : 2.734815 2.936038 0.201222 Tg C | |||
ALD2 Biogenic : 0.971226 0.993718 0.022492 Tg C | |||
EOH Biogenic : 0.928745 0.950253 0.021508 Tg C | |||
ISOP Biogenic : 33.565337 30.881374 -2.683962 Tg C | |||
LIMO Biogenic : 0.930596 0.903745 -0.026852 Tg | |||
MTPA Biogenic : 8.089232 8.345941 0.256708 Tg | |||
MTPO Biogenic : 3.756286 3.860389 0.104104 Tg | |||
PRPE Biogenic : 1.855930 1.997076 0.141146 Tg C | |||
SOAP Biogenic : 1.405632 1.206619 -0.199013 Tg | |||
SOAS Biogenic : 1.405632 1.206619 -0.199013 Tg | |||
.. | |||
SALA Natural : 5.620708 4.653316 -0.967392 Tg | |||
SALC Natural : 340.191067 281.640070 -58.550997 Tg | |||
... | |||
NO Soil : 1.580800 1.376302 -0.204498 Tg | |||
Revision as of 15:07, 30 March 2020
This page includes information about all benchmark simulations for GEOS-Chem 12.8.0.
GEOS-Chem Classic 1-month benchmark
Benchmark plots
Enable PDF bookmarks1 in the files linked below to navigate between species. See the Species in GEOS-Chem wiki page for species definitions and details.
Species Category2 | Plots | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Oxidants
O3, CO, OH, NOx |
sfc | 500hPa | full column | stratosphere | sfc | |
Aerosols
DST1, DST2, DST3, DST4, NH4, NIT, SO4, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA |
sfc | 500hPa | full column | stratosphere | sfc | AOD |
Bromine
Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr |
sfc | 500hPa | full column | stratosphere | sfc | |
Chlorine
Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO |
sfc | 500hPa | full column | stratosphere | -- | |
Iodine
Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO |
sfc | 500hPa | full column | stratosphere | sfc | |
Nitrogen
NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3 |
sfc | 500hPa | full column | stratosphere | sfc | |
Primary Organics
EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H6, C3H8, PRPE, TOLU, XYLE |
sfc | 500hPa | full column | stratosphere | sfc | |
Secondary Organics
ACTA, ALD2, CH2O, HPALDs, MACR, IEPOX, ACET, MEK, MVK, ISOPN, GLYX, HCOOH, MAP, RCHO, MP |
sfc | 500hPa | full column | stratosphere | sfc | |
Secondary Organic Aerosols
TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS |
sfc | 500hPa | full column | stratosphere | sfc | |
Sulfur
SOx, DMS, OCS, SO2, SO4 |
sfc | 500hPa | full column | stratosphere | sfc | |
ROy
H2O2, H, H2, H2O, HO2, O1D, OH, RO2 |
sfc | 500hPa | full column | stratosphere | -- | |
J-values | sfc | 500hPa | full column | stratosphere | -- | -- |
Emissions by HEMCO category | Total
Aircraft, Anthropogenic, Biomass Burning, Biogenic, Lightning, Natural, Ocean, Seabirds, Decaying Plants, Ship, Soil, Degassing Volcanoes, Erupting Volcanoes | |||||
Emission totals | Tables by species | |||||
Global mass | Entire atmosphere | |||||
OH metrics | OH concentration, MCF lifetime, CH4 lifetime |
1All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
2Species category and lumped species definitions are simple to adjust. Updating them requires only editing the YAML files.
Benchmark assessment form
Description | |||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
New features added into GEOS-Chem |
| ||||||||||||||||||||||||||||||||
Version, resolution, met fields used: | GEOS-FP (72L), 4x5, July 2016 | ||||||||||||||||||||||||||||||||
1-month benchmark finished on: | Mon Jan 6 06:18:07 EST 2020 | ||||||||||||||||||||||||||||||||
Performance statistics: |
| ||||||||||||||||||||||||||||||||
Git tag | 12.8.0-rc.0 | ||||||||||||||||||||||||||||||||
Compared to previous benchmark: | 12.7.0 | ||||||||||||||||||||||||||||||||
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Emissions, Photolysis, Chemistry, Other (please specify): | ||||||||||||||||||||||||||||||||
Unit test results may be viewed at: | http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.8.0/GCC/Plots/GC_12.8.0_Mar19.results.html | ||||||||||||||||||||||||||||||||
Metrics | |||||||||||||||||||||||||||||||||
Global mean OH from log file (% change): | 11.8937088091687 x 105 molec/cm3 (+0.96%) | ||||||||||||||||||||||||||||||||
Methyl chloroform lifetime (% change): | 5.2374 years (-1.25%) | ||||||||||||||||||||||||||||||||
Methane lifetime (% change): | 8.8001years (-1.30%) | ||||||||||||||||||||||||||||||||
Overview | |||||||||||||||||||||||||||||||||
Comments on observed differences: | Below we summarize the notable changes caused by specific updates.
############################################################################### ### Emissions totals ### ### Ref = GC_12.7.0; Dev = GC_12.8.0 ### ############################################################################### Ref Dev Dev - Ref DST1 Natural : 9.550223 3.400091 -6.150131 Tg DST2 Natural : 23.987765 8.540177 -15.447588 Tg DST3 Natural : 43.524575 15.495716 -28.028860 Tg DST4 Natural : 47.613968 16.951628 -30.662340 Tg ... ACET Biogenic : 2.734815 2.936038 0.201222 Tg C ALD2 Biogenic : 0.971226 0.993718 0.022492 Tg C EOH Biogenic : 0.928745 0.950253 0.021508 Tg C ISOP Biogenic : 33.565337 30.881374 -2.683962 Tg C LIMO Biogenic : 0.930596 0.903745 -0.026852 Tg MTPA Biogenic : 8.089232 8.345941 0.256708 Tg MTPO Biogenic : 3.756286 3.860389 0.104104 Tg PRPE Biogenic : 1.855930 1.997076 0.141146 Tg C SOAP Biogenic : 1.405632 1.206619 -0.199013 Tg SOAS Biogenic : 1.405632 1.206619 -0.199013 Tg .. SALA Natural : 5.620708 4.653316 -0.967392 Tg SALC Natural : 340.191067 281.640070 -58.550997 Tg ... NO Soil : 1.580800 1.376302 -0.204498 Tg
| ||||||||||||||||||||||||||||||||
Details | |||||||||||||||||||||||||||||||||
List all SURFACE species, J-Values, and COLUMN AOD values that changed by 10% or more: |
| ||||||||||||||||||||||||||||||||
List all 500 hPa species and J-Values that changed by 10% or more : |
| ||||||||||||||||||||||||||||||||
List all ZONAL MEAN species and J-Values that changed by 10% or more: |
| ||||||||||||||||||||||||||||||||
List all EMISSIONS that changed by 10% or more: |
| ||||||||||||||||||||||||||||||||
Approval | |||||||||||||||||||||||||||||||||
Requires further investigation: | |||||||||||||||||||||||||||||||||
Approved by: | |||||||||||||||||||||||||||||||||
Date of approval: |
GCHP 1-month benchmark
The following sections contain validation plots for GCHP 12.80.
Comparison of GCHP versions
This table contains plots comparing GCHP 12.7.0 (Ref) and GCHP 12.80 (Dev) for a 1-month simulation.
Comparison of GCHP and GEOS-Chem Classic
This table contains plots comparing GEOS-Chem Classic 12.8.0 (Ref) against GCHP 12.8.0 (Dev) for a 1-month simulation.
Category | Plots | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Oxidants | sfc | 500hPa | full column | stratosphere | full column | |
Aerosols | sfc | 500hPa | full column | stratosphere | full column | Column AOD |
Bromine | sfc | 500hPa | full column | stratosphere | full column | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | full column | |
Nitrogen | sfc | 500hPa | full column | stratosphere | full column | |
Primary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Secondary Organic Aerosols | sfc | 500hPa | full column | stratosphere | full column | |
Sulfur | sfc | 500hPa | full column | stratosphere | full column | |
ROy | sfc | 500hPa | full column | stratosphere | -- | |
J-values | sfc | 500hPa | full column | stratosphere | -- | |
Emissions by HEMCO category |
Aircraft,
Anthro,
Bioburn,
Biogenic, |
Emission totals |
1-year Transport Tracers benchmarks
Two 1-year Transport Tracers benchmark simulation were performed using GEOS-Chem 12.8.0:
Both simulations utilized 4° x 5° GEOS-FP met fields for the year 2016, with a 10-year spinup. These simulations can be used to validate the Luo wet dep scheme which is offered as an option starting in this version.
Month | Plots | |||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | |||||
January | sfc | 500hPa | full column | stratosphere | ||
April | sfc | 500hPa | full column | stratosphere | ||
July | sfc | 500hPa | full column | stratosphere | ||
October | sfc | 500hPa | full column | stratosphere | ||
Emissions | Total Emissions |
NOTE: At present, we have only created the 6-panel difference plots for species concentrations and total emissions, but this can be expanded to other benchmark output in the future.