GEOS-Chem 13.2.1: Difference between revisions

Latest revision as of 17:12, 13 September 2021

This page includes information about GEOS-Chem 13.2.1.

Version overview

Release date: 10 Sep 2021
DOI for GEOS-Chem Classic 13.2.1: 10.5281/zenodo.5500717
DOI for GCHP 13.2.1: 10.5281/zenodo.5500718
DOI for HEMCO 3.1.1: 10.5281/zenodo.5504133

The following items have been added to GEOS-Chem 13.2.1 since the last benchmark for GEOS-Chem 13.2.0. See also the following Github pages:

Feature	Contributor(s)	Model scope	Notes
Updates that will affect full-chemistry simulations
Retire tropchem simulation as an option	Melissa Sulprizio (GCST)	Structural	NOTE: Users can still choose between simulations with 72 or 47 vertical levels
Bug fix: Make sure JvalO3O1D and JValO3O3P diagnostic arrays are zeroed in flexchem_mod.F90	Haipeng Lin (Harvard) Lizzie Lundgren (GCST))	Diagnostics	NOTE: This update will cause JvalO3O1D and JvalO3O3P plots to differ w/r/t previous versions, but will not affect benchmark metrics such as mean OH concentration, MCF lifetime, etc.
Fix to HEMCO lightning flash rate diagnostic units	Lee Murray (Rochester)	HEMCO Diagnostics	See also geoschem/HEMCO #96
Updates that will not affect full-chemistry simulations
Planeflight diagnostic bug fixes: Fixed incorrect unit conversions in planeflight diagnostic output Run stops unexpectedly when converting altitude -> pressure	Tess Carter (MIT) Bob Yantosca (GCST)	Diagnostics
Fixed typo in gc_grid_mod.F90 that caused a regridding error in nested-grid simulations	Lizzie Lundgren (GCST) Bob Yantosca (GCST)	Grids	Also see: geoschem/geos-chem #788 geoschem/geos-chem #786
Enable nested-grid integration testing with the following updates: Fullchem Create a new sample boundary condition file for nested-grid simulations HEMCO_Config.rc.fullchem file now points to the new sample boundary condition files Include nested-grid integration tests (these had been disabled) Turn off NEI2011 by default for North-America nested-grid simulations CH4 Add a new sample boundary conditions file for CH4 nested grids	Bob Yantosca (GCST)	Nested-grid & Testing
Add WashU data server to GCHP data download script	Liam Bindle (WashU)	Data download
Update the download_data.py script to read global settings from a YAML file Also enables downloads from `http://geoschemdata.wustl.edu`	Bob Yantosca (GCST)	Data download
Bug fix: Halt simulation if `Restart.frequency` does not match `Restart.duration` in HISTORY.rc (for GEOS-Chem Classic only)	Bethany Sutherland (NCST) Bob Yantosca (GCST)	Diagnostics
Bug fixes for nested-grid simulations: Bug fix: Compute grid box latitude edges properly for nested-grid simulations This fixes a bug introduced by the GCAP 2.0 met field updates in 13.1.0 In TPCORE_NESTED, set `iord_bg=iord` and `jord_bg=jord`	Bob Yantosca (GCST) Eloise Marais (UCL)	Nested Grids
Bug fixes for Hg simulation: Now zero geogenic Hg emissions if LAnthroHgOnly flag is turned on Fix small negative values in Streets Hg emissions file	Harriet Gounia (Wollongong) Jenny Fisher (Wollongong) Bob Yantosca (GCST) Colin Thackray (Harvard)	Hg simulation
Run directory updates for GEOS-Chem in GEOS	Christoph Keller (GMAO) Lizzie Lundgren (GCST)	GEOS
Add fixes for generating HEMCO standalone run directories	Melissa Sulprizio (GCST)	HEMCO Bug fix
Updates that will only affect GCHP
Bug fix for vertical scale factors in ExtData.rc	Seb Eastham (MIT) Melissa Sulprizio (GCST)	Config files
Bug fix for better error messages if GCHP throws an error during set up	Liam Bindle (WashU)	MAPL	Also see: geoschem/MAPL #13
NetCDF read errors now print an error message that includes the offending file's path and a description of the error	Liam Bindle (WashU)	MAPL	Also see: See geoschem/MAPL #14
Minor GCHP run directory updates	Lizzie Lundgren (GCST)	Rundir creation

New data directories

The following data directories have been added or updated in this version. You will have to download the directories relevant to your simulation.

Inventory	Type	What was added?	Directory
`HEMCO/SAMPLE_BCs/v2021-07`	Optional	Sample boundary condition files for testing nested-grid simulations (currently: fullchem, CH4)	`HEMCO/SAMPLE_BCs/v2021-07`

@@ Line 1: / Line 1: @@
 '''''[[GEOS-Chem_versions|GEOS-Chem Versions Page]]'''''
-This page includes information about GEOS-Chem 13.2.1 which is currently in development.
+This page includes information about GEOS-Chem 13.2.1.
 === Version overview ===
-The following items have been added to GEOS-Chem 13.2.1 since the last benchmark for [[GEOS-Chem 13.2.0]]. See also the [https://github.com/geoschem/geos-chem/milestone/18 13.2.1 milestone on Github].
+* '''Release date:''' 10 Sep 2021
+* '''DOI for GEOS-Chem Classic 13.2.1:''' [https://doi.org/10.5281/zenodo.5500717 10.5281/zenodo.5500717]
+* '''DOI for GCHP 13.2.1:''' [https://doi.org/10.5281/zenodo.5500718 10.5281/zenodo.5500718]
+* '''DOI for HEMCO 3.1.1:''' [https://doi.org/10.5281/zenodo.5504133 10.5281/zenodo.5504133]
+The following items have been added to GEOS-Chem 13.2.1 since the last benchmark for [[GEOS-Chem 13.2.0]]. See also the following Github pages:
+*[https://github.com/geoschem/geos-chem/milestone/25?closed=1 13.2.1 milestone for geoschem/geos-chem]
+*[https://github.com/geoschem/GCHP/milestone/8?closed=1 13.2.1 milestone for geoschem/GCHP]
+*[https://github.com/geoschem/HEMCO/milestone/3?closed=1 3.1.1 milestone for geoschem/HEMCO]
 {| border=1 cellspacing=0 cellpadding=5
@@ Line 13: / Line 21: @@
 !width="100px"|Model scope
 !width="300px"|Notes
+|-valign="top"
+!colspan="4" bgcolor="#CCFFFF"|Updates that will affect full-chemistry simulations
+|-valign="top"
+|[https://github.com/geoschem/geos-chem/issues/839 Retire tropchem simulation as an option]
+|Melissa Sulprizio (GCST)
+|Structural
+|
+*NOTE: Users can still choose between simulations with 72 or 47 vertical levels
+|-valign="top"
+|[https://github.com/geoschem/geos-chem/issues/810 Bug fix: Make sure JvalO3O1D and JValO3O3P diagnostic arrays are zeroed in flexchem_mod.F90]
+|Haipeng Lin (Harvard)<br>Lizzie Lundgren (GCST))
+|Diagnostics
+|
+*NOTE: This update will cause JvalO3O1D and JvalO3O3P plots to differ w/r/t previous versions, but will not affect benchmark metrics such as mean OH concentration, MCF lifetime, etc.
+|-valign="top"
+|[https://github.com/geoschem/HEMCO/issues/95 Fix to HEMCO lightning flash rate diagnostic units]
+|Lee Murray (Rochester)
+|HEMCO<br>Diagnostics
+|
+*See also [https://github.com/geoschem/HEMCO/pull/96 geoschem/HEMCO #96]
 |-valign="top"
@@ Line 19: / Line 51: @@
 |-valign="top"
 |Planeflight diagnostic bug fixes:
-*Fixed incorrect unit conversions in planeflight diagnostic output
+*[https://github.com/geoschem/geos-chem/issues/796 Fixed incorrect unit conversions in planeflight diagnostic output]
-*Run stops unexpectedly when converting altitude -> pressure
+*[https://github.com/geoschem/geos-chem/issues/801 Run stops unexpectedly when converting altitude -> pressure]
 |Tess Carter (MIT)<br>Bob Yantosca (GCST)
 |Diagnostics
 |
-*See [https://github.com/geoschem/geos-chem/issues/796 geoschem/geos-chem #796]
-*See [https://github.com/geoschem/geos-chem/issues/801 geoschem/geos-chem #801]
+|-valign="top"
+|[https://github.com/geoschem/geos-chem/issues/798 Fixed typo in gc_grid_mod.F90 that caused a regridding error in nested-grid simulations]
+|Lizzie Lundgren (GCST)<br>Bob Yantosca (GCST)
+|Grids
+|Also see:
+*[https://github.com/geoschem/geos-chem/issues/788 geoschem/geos-chem #788]
+*[https://github.com/geoschem/geos-chem/issues/786 geoschem/geos-chem #786]
+|-valign="top"
+|Enable nested-grid integration testing with the following updates:
+'''Fullchem'''
+* [https://github.com/geoschem/geos-chem/issues/807 Create a new sample boundary condition file for nested-grid simulations]
+* [https://github.com/geoschem/geos-chem/issues/807 HEMCO_Config.rc.fullchem file now points to the new sample boundary condition files]
+* [https://github.com/geoschem/geos-chem/issues/807 Include nested-grid integration tests (these had been disabled)]
+* [https://github.com/geoschem/geos-chem/issues/811 Turn off NEI2011 by default for North-America nested-grid simulations]
+'''CH4'''
+* [https://github.com/geoschem/geos-chem/issues/811 Add a new sample boundary conditions file for CH4 nested grids]
+|Bob Yantosca (GCST)
+|Nested-grid &<br>Testing
+|
+|-valign="top"
+|[https://github.com/geoschem/geos-chem/issues/832 Add WashU data server to GCHP data download script]
+|Liam Bindle (WashU)
+|Data download
+|
+|-valign="top"
+|[https://github.com/geoschem/geos-chem/issues/812 Update the download_data.py script to read global settings from a YAML file]
+*Also enables downloads from <tt>[http://geoschemdata.wustl.edu http://geoschemdata.wustl.edu]</tt>
+|Bob Yantosca (GCST)
+|Data download
+|
+|-valign="top"
+|[https://github.com/geoschem/geos-chem/issues/825 Bug fix: Halt simulation if <tt>Restart.frequency</tt> does not match <tt>Restart.duration</tt> in HISTORY.rc (for GEOS-Chem Classic only)]
+|Bethany Sutherland (NCST)<br>Bob Yantosca (GCST)
+|Diagnostics
+|
+|-valign="top"
+|Bug fixes for nested-grid simulations:
+*[https://github.com/geoschem/geos-chem/issues/837 Bug fix: Compute grid box latitude edges properly for nested-grid simulations]
+**This fixes a bug introduced by the GCAP 2.0 met field updates in 13.1.0
+*[https://github.com/geoschem/geos-chem/issues/840 In TPCORE_NESTED, set <tt>iord_bg=iord</tt> and <tt>jord_bg=jord</tt>]
+|Bob Yantosca (GCST)<br>Eloise Marais (UCL)
+|Nested Grids
+|
+|-valign="top"
+|Bug fixes for Hg simulation:
+*[https://github.com/geoschem/geos-chem/issues/847 Now zero geogenic Hg emissions if LAnthroHgOnly flag is turned on]
+*[https://github.com/geoschem/geos-chem/issues/879 Fix small negative values in Streets Hg emissions file]
+|Harriet Gounia (Wollongong)<br>Jenny Fisher (Wollongong)<br>Bob Yantosca (GCST)<br>Colin Thackray (Harvard)
+|Hg simulation
+|
+|-valign="top"
+|Run directory updates for GEOS-Chem in GEOS
+|Christoph Keller (GMAO)<br>Lizzie Lundgren (GCST)
+|GEOS
+|
+|-valign="top"
+|[https://github.com/geoschem/HEMCO/pull/98 Add fixes for generating HEMCO standalone run directories]
+|Melissa Sulprizio (GCST)
+|HEMCO<br>Bug fix
+|
+|-valign="top"
+!colspan="4" bgcolor="#CCFFFF"|Updates that will only affect GCHP
+|-valign="top"
+|[https://github.com/geoschem/geos-chem/issues/845 Bug fix for vertical scale factors in ExtData.rc]
+|Seb Eastham (MIT)<br>Melissa Sulprizio (GCST)
+|Config files
+|
+|-valign="top"
+|[https://github.com/GEOS-ESM/MAPL/pull/1002 Bug fix for better error messages if GCHP throws an error during set up]
+|Liam Bindle (WashU)
+|MAPL
+|Also see:
+*[https://github.com/geoschem/MAPL/pull/13 geoschem/MAPL #13]
+|-valign="top"
+|[https://github.com/GEOS-ESM/MAPL/pull/962 NetCDF read errors now print an error message that includes the offending file's path and a description of the error]
+|Liam Bindle (WashU)
+|MAPL
+|Also see:
+*See [https://github.com/geoschem/MAPL/pull/14 geoschem/MAPL #14]
+|-valign="top"
+|[https://github.com/geoschem/geos-chem/issues/835 Minor GCHP run directory updates]
+|Lizzie Lundgren (GCST)
+|Rundir creation
+|
+|}
+=== New data directories ===
+The following data directories have been added or updated in this version.  You will have to [[Downloading_GEOS-Chem_data_directories|download the directories]] relevant to your simulation.
+{| border=1 cellspacing=0 cellpadding=5
+|-bgcolor="#CCCCCC"
+!width="250px"|Inventory
+!width="100px"|Type
+!width="400px"|What was added?
+!width="300px"|Directory
+|-valign="top"
+|[http://ftp.as.harvard.edu/gcgrid/data/ExtData/HEMCO/SAMPLE_BCs/v2021-07/README <tt>HEMCO/SAMPLE_BCs/v2021-07</tt>]
+|Optional
+|Sample boundary condition files for testing nested-grid simulations (currently: fullchem, CH4)
+|[http://ftp.as.harvard.edu/gcgrid/data/ExtData/HEMCO/SAMPLE_BCs/v2021-07/README <tt>HEMCO/SAMPLE_BCs/v2021-07</tt>]
 |}

GEOS-Chem 13.2.1: Difference between revisions

Latest revision as of 17:12, 13 September 2021

Version overview

New data directories

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