|
|
| (41 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | ==feel free to experiment here == | + | === Species added === |
| | | | |
| − | == Overview ==
| + | Species added between versions 14.5.0-alpha.5 and 14.5.0-alpha.9: |
| | | | |
| − | === An introduction to netCDF diagnostics === | + | {| border=1 cellspacing=0 cellpadding=5 |
| | + | !width='100px' bgcolor='#CCCCCC'|Name |
| | + | !width='100px' bgcolor='#CCCCCC'|Formula |
| | + | !width='200px' bgcolor='#CCCCCC'|Fullname |
| | + | !width='30px' bgcolor='#CCCCCC'|Advected |
| | + | !width='30px' bgcolor='#CCCCCC'|Dry deposited |
| | + | !width='30px' bgcolor='#CCCCCC'|Gas |
| | + | !width='30px' bgcolor='#CCCCCC'|Photolyzed |
| | + | !width='30px' bgcolor='#CCCCCC'|Wet deposited |
| | | | |
| − | Bob Yantosca has created [[Media:Netcdf_Diagnostics.pdf|an overview presentation about the new netCDF diagnostics for v11-02]].
| + | |-valign='top' |
| − | | + | |ACO3 |
| − | === Sample HISTORY.rc diagnostic input file ===
| + | |C3H3O3 |
| − | | + | |Peroxyacetyl radical for APAN |
| − | Here is a sample <tt>HISTORY.rc</tt> file that is used to request netCDF diagnostic output from a GEOS-Chem “Classic” simulation. The names for netCDF diagnostic quantities follow the [[#Naming convention|naming convention listed above]].
| + | |
| − | | + | |
| − | #===================================================================
| + | |
| − | # Declare collection names. Disable collections by commenting
| + | |
| − | # each collection name out with a "#" character.
| + | |
| − | #===================================================================
| + | |
| − | COLLECTIONS: <span style="color:red">'SpeciesConc'</span>,
| + | |
| − | <span style="color:blue">'ConcAfterChem'</span>,
| + | |
| − | ::
| + | |
| − | #===================================================================
| + | |
| − | # Collection to save out GEOS-Chem species concentrations
| + | |
| − | #===================================================================
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:gray">template: '%y4%m2%d2_%h2%n2z.nc4'</span>,
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:darkorange">frequency: 060000</span>,
| + | |
| − | <span style="color:red">SpeciesConc</span>.format: 'CFIO',
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:purple">duration: 240000</span>,
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:brown">mode: 'instantaneous'</span>,
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:green">fields: 'SpeciesConc_?ADV?'</span>, 'GIGCchem',
| + | |
| − | ::
| + | |
| − | #===================================================================
| + | |
| − | # Collection to save out concentrations after chemistry
| + | |
| − | # (from the FlexChem/KPP solver)
| + | |
| − | #===================================================================
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:gray">template: '%y4%m2%d2_%h2%n2z.nc4'</span>,
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:magenta">frequency: 000100 000000</span>,
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.format: 'CFIO',
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:purple">duration: 000100 000000</span>,
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:darkcyan">mode: 'time-averaged'</span>,
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:green">fields: 'OHconcAfterChem'</span>, 'GIGCchem',
| + | |
| − | <span style="color:green">'HO2concAfterChem'</span>, 'GIGCchem',
| + | |
| − | <span style="color:green">'O1DconcAfterChem'</span>, ‘GIGCchem’,
| + | |
| − | <span style="color:green">'O3PconcAfterChem'</span>, ‘GIGCchem’,
| + | |
| − | ::
| + | |
| − | | + | |
| − | In this HISTORY.rc file, we are requesting two collections, or types of netCDF file output.
| + | |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | |
| − | |-valign="top" bgcolor="#CCCCCC" | + | |
| − | !width="250px"|Term
| + | |
| − | !width="750px"|Explanation
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span></tt>
| + | |
| − | |Name of the first collection in this <tt>HISTORY.rc</tt> file. A collection is a series of files containing the same GEOS-Chem diagnostic quantities.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:gray">template</span></tt>
| + | |
| − | |Determines the date and time format for each filename in the in the <tt><span style="color:red">SpeciesConc</span></tt> collection.
| + | |
| − | *The string <tt>%y4%m2%d2_%h2%n2z.nc4</tt> will print <tt>YYYYMMDD_hhmmz.nc4</tt> to the end of each netCDF filename
| + | |
| − | **<tt>YYYYMMDD</tt> is the date in year/month/day format
| + | |
| − | **<tt>hhmm</tt> is the time in hour:minutes format.
| + | |
| − | **<tt>z</tt> denotes "Zulu", which is an abbreviation for UTC time.
| + | |
| − | **<tt>.nc4</tt> denotes that the data file is in the netCDF-4 format.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:darkorange">frequency</span></tt>
| + | |
| − | |For instantaneous collections (such as <tt><span style="color:red">SpeciesConc</span></tt>), the <tt><span style="color:darkorange">frequency</span></tt> attribute determines the interval at which data will be saved to disk.
| + | |
| − | *The <tt><span style="color:darkorange">frequency</span></tt> attribute can be specified as either "<tt>hhmmss</tt>" or "<tt>YYMMDD hhmmss</tt>".
| + | |
| − | *In this example, data belonging to the <tt><span style="color:red">SpeciesConc</span></tt> collection will be written to the file <span style="color:darkorange">every 6 hours</span>.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.format</tt>
| + | |
| − | |For GCHP simulations only: indicates the I/O library that will be used. This can be omitted for GEOS-Chem "Classic" simualations.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:purple">duration</span></tt>
| + | |
| − | |Determines how often a new file will be written to disk.
| + | |
| − | *The <tt><span style="color:purple">duration</span></tt> attribute can be specified as either <tt>hhmmss</tt> or <tt>YYMMDD hhmmss</tt>.
| + | |
| − | *In this example, a new <tt><span style="color:red">SpeciesConc</span></tt> collection file will be created <span style="color:purple">every 24 hours</span>.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:brown">mode</span></tt>
| + | |
| − | |Determines the averaging method for the <tt><span style="color:red">SpeciesConc</span></tt> collection
| + | |
| − | *In this example, <tt><span style="color:red">SpeciesConc</span></tt> is defined as an <tt><span style="color:brown">instantaneous</span></tt> (aka "time-series") collection. Diagnostic quantities belonging to this collection will be written directly to disk without any temporal averaging, at the specified <span style="color:darkorange">frequency</span></tt>.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt>::</tt>
| + | |
| − | |Signifies the end of the list of collections, as well as the end of each defined collection. "<tt>::</tt>" may be placed at any column in the file.
| + | |
| − | | + | |
| − | |}
| + | |
| − | | + | |
| − | #The first collection is <span style="color:brown">instantaneous (aka timeseries) output</span> with <span style="color:darkorange">a 6-hour frequency</span>. A new file will be created <span style="color:purple">every 24 hours</span>.
| + | |
| − | #The second collection (<span style="color:blue">ConcAfterChem</span>) is <span style="color:darkcyan">time-averaged output</span>. Data will be updated at the dynamic timestep (= 10 minutes for most GEOS-Chem simulations) by default and <span style="color:magenta">averaged into monthly-mean output</span>. A new file will be created <span style="color:purple">at the start of each new month</span>.
| + | |
| − | #<span style="color:green">The diagnostic quantities (aka "fields")</span> that will be archived in each collection are listed after the “fields” tag. These diagnostic quantities follow the naming convention described in the previous section.
| + | |
| − | #*For GEOS-Chem “Classic” simulations, you may use wildcards to request a multiple quantities. For example, instead of listing <tt>SpeciesConc_NO</tt>, <tt>SpeciesConc_O3</tt>, <tt>SpeciesConc_PAN</tt>, <tt>SpeciesConc_CO</tt>, etc. individually, you can use <tt>SpeciesConc_?ADV?</tt> to request all of the advected GEOS_Chem species.
| + | |
| − | #*The "GIGCchem" text is only relevant for GCHP and will be ignored for GEOS-Chem “Classic” simulations.
| + | |
| − | #The <span style="color:gray">template</span> setting sets the date and time format for each output file in the collection.
| + | |
| − | #*The string <tt>%y4%m2%d2_%h2%n2z.nc4</tt> will print <tt>YYYYMMDD_hhmmz.nc4</tt> to the end of each netCDF filename, where YYYYMMDD is the date in year/month/day format and <tt>hhmm</tt> is the time in hour:minutes format.
| + | |
| − | #*The <tt>z</tt> character denotes "Zulu", which is an abbreviation for UTC time.
| + | |
| − | #The <tt>::</tt> signifies the end of the list of collections, as well as the end of each defined collection. The <tt>::</tt> may be placed at any column in the HISTORY.rc file.
| + | |
| − | #The format setting only applies to GCHP simulations.
| + | |
| − | | + | |
| − | For more examples, please see [[Media:Netcdf_Diagnostics.pdf|Bob Yantosca’s netCDF diagnostics overview presentation]]. We will also add more documentation to the GEOS-Chem wiki in the coming weeks.
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 20:14, 8 February 2018 (UTC)
| + | |
| − | | + | |
| − | === Legend ===
| + | |
| − | | + | |
| − | The following terms are used in the tables below.
| + | |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | |
| − | |-valign="top" bgcolor="#CCCCCC"
| + | |
| − | !width="175px"|Term
| + | |
| − | !width="600px"|Explanation
| + | |
| − | !width="225px"|Example
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><spcname></tt>
| + | |
| − | |Short name of a GEOS-Chem species, used in several diagnostics listed below.
| + | |
| − | | + | |
| − | NOTES:
| + | |
| − | | + | |
| − | #The single-underscore (<tt>_</tt>) preceding the species name indicates that use of a species wildcard (e.g <tt>SpeciesConc_<span style="color:red">?ADV?</span></tt>, which only selects advected species) is possible.
| + | |
| − | #Allowable wild card values (case-insensitive) for species name are:
| + | |
| − | #*<tt>?ADV?</tt>: Only the advected species
| + | |
| − | #*<tt>?AER?</tt>: Only the aerosol species
| + | |
| − | #*<tt>?ALL?</tt>: All GEOS-Chem species
| + | |
| − | #*<tt>?DRY?</tt>: Only the dry-deposited species
| + | |
| − | #*<tt>?FIX?</tt>: Only the inactive (aka "fixed") species in the KPP chemical mechanism
| + | |
| − | #*<tt>?GAS?</tt>: Only the gas-phase species
| + | |
| − | #*<tt>?KPP?</tt>: Only the KPP species
| + | |
| − | #*<tt>?PHO</tt>: Only the photolyzed species
| + | |
| − | #*<tt>?VAR?</tt>: Only the active (aka "variable") species in the KPP chemical mechanism
| + | |
| − | #*<tt>?WET?</tt>: Only the wet-deposited species
| + | |
| − | #*<tt>?PRODLOSS?</tt>: Only prod/loss diagnostic species
| + | |
| − | #*<tt>?DUSTBIN</tt>: Only the dust bin number
| + | |
| − | #<tt><spcname></tt> should be case-insensitive. In most places where species names are compared, species names are first converted to uppercase and then a string match test is done. But because most species names represent a chemical formula (e.g. NO, CO),they will be mostly all uppercase. Some species names would have mixed-case, e.g. BrCl, Rn, Pb, Be7, etc.
| + | |
| − | |<tt>SpeciesConc_<span style="color:red">NO</span></tt><br><tt>SpeciesConc_<span style="color:red">CO</span></tt><br><tt>SpeciesConc_<span style="color:red">?ADV?</span></tt><br><tt>SpeciesConc_<span style="color:red">?AER?</span></tt><br><tt>SpeciesConc_<span style="color:red">?ALL?</span></tt><br><tt>SpeciesConc_<span style="color:red">?DRY?</span></tt><br><tt>SpeciesConc_<span style="color:red">?FIX?</span></tt><br><tt>SpeciesConc_<span style="color:red">?GAS?</span></tt><br><tt>SpeciesConc_<span style="color:red">?KPP?</span></tt><br><tt>SpeciesConc_<span style="color:red">?PHO?</span></tt><br><tt>SpeciesConc_<span style="color:red">?VAR?</span></tt><br><tt>SpeciesConc_<span style="color:red">?WET?</span></tt><br><tt>...etc...</tt>
| + | |
| − | | + | |
| − | |-valign="top" bgcolor="#CCFFFF"
| + | |
| − | |<tt><metname></tt>
| + | |
| − | |Denotes a met field (or derived quantity such as total optical depth).
| + | |
| − | | + | |
| − | NOTES:
| + | |
| − | #<tt>MET_</tt>, <tt>Met_</tt> or <tt>met_</tt> (case-insensitive) must precede <tt><metname></tt>. This tells the diagnostic code to look for the corresponding field of the <tt>State_Met</tt> object.
| + | |
| − | |<tt>MET_<span style="color:red">U10M</span></tt><br><tt>MET_<span style="color:red">PS</span></tt><br><tt>MET_<span style="color:red">HFLUX</span></tt><br><tt>MET_<span style="color:red">T</span></tt><br><tt>...etc...</tt>
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><photobin></tt>
| + | |
| − | |Number of a given wavelength bin for FAST-JX photolysis
| + | |
| − | |<tt>1-18</tt> (with UCX on);<br><tt>1-12</tt> (with UCX off)
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><aername></tt>
| + | |
| − | |Aerosol quanatities included in the following array fields:
| + | |
| − | | + | |
| − | #<tt>State_Chm%AeroArea</tt>
| + | |
| − | #<tt>State_Chm%AeroRadi</tt>
| + | |
| − | #<tt>State_Chm%WetAeroArea</tt>
| + | |
| − | #<tt>State_Chm%WetAeroRadi</tt>
| + | |
| − | | + | |
| − | These do not always conform to GEOS-Chem species (for example, the mineral dust bins are the bins that are used as input for photolysis).
| + | |
| − | | + | |
| − | #<tt>MDUST1</tt>: Mineral dust (0.15μm)
| + | |
| − | #<tt>MDUST2</tt>: Mineral dust (0.25μm)
| + | |
| − | #<tt>MDUST3</tt>: Mineral dust (0.40μm)
| + | |
| − | #<tt>MDUST4</tt>: Mineral dust (0.80μm)
| + | |
| − | #<tt>MDUST5</tt>: Mineral dust (1.50μm)
| + | |
| − | #<tt>MDUST6</tt>: Mineral dust (2.50μm)
| + | |
| − | #<tt>MDUST7</tt>: Mineral dust (4.00μm)
| + | |
| − | #<tt>SULF</tt>: Sulfate
| + | |
| − | #<tt>BC</tt>: Black Carbon
| + | |
| − | #<tt>OC</tt>: Organic Carbon
| + | |
| − | #<tt>SSA</tt>: Sea salt aerosol, accumulation mode
| + | |
| − | #<tt>SSC</tt>: Sea salt aerosol, coarse mode
| + | |
| − | #<tt>BGSULF</tt>: Background stratospheric sulfate
| + | |
| − | #<tt>ICEI</tt>: Irregular ice cloud (Mischenko)
| + | |
| − | |<tt>CHEM_AeroArea<span style="color:red">MDUST1</span></tt><br><tt>CHEM_WetAeroRadi<span style="color:red">SSA</span></tt><br><tt>...etc...</tt>
| + | |
| − | | + | |
| − | |-valign="top" bgcolor="#CCFFFF"
| + | |
| − | |<tt>nAdvect</tt>
| + | |
| − | |Number of advected GEOS-Chem species
| + | |
| | | | | | |
| − |
| |
| − | |-valign="top"
| |
| − | |<tt>nDryDep</tt>
| |
| − | |Number of dry-depositing GEOS-Chem species
| |
| | | | | | |
| − | | + | |X |
| − | |-valign="top" bgcolor="#CCFFFF" | + | |
| − | |<tt>nKppSpc</tt>
| + | |
| − | |Number of species in the KPP chemistry mechanism
| + | |
| | | | | | |
| − |
| |
| − | |-valign="top"
| |
| − | |<tt>nPhoto</tt>
| |
| − | |Number of photolyzing GEOS-Chem species
| |
| | | | | | |
| − | | + | |
| − | |-valign="top" bgcolor="#CCFFFF" | + | |-valign='top' |
| − | |<tt>nTomas</tt> | + | |ACR |
| − | |Number of size-resolved TOMAS species | + | |C3H4O |
| − | |<tt>IBINS*(ICOMP-IDIAG+1)</tt> | + | |Acrolein |
| − | | + | |X |
| − | |-valign="top" | + | |X |
| − | |<tt>nWetDep</tt> | + | |X |
| − | |Number of soluble, wet-depositing GEOS-Chem species | + | |X |
| | | | | | |
| − | | + | |
| | + | |-valign='top' |
| | + | |ACRO2 |
| | + | |C3H5O4 |
| | + | |Peroxy radical from ACR |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |ALK7 |
| | + | |C7H16 |
| | + | |Lumped >= C6 Alkanes |
| | + | |X |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |APAN |
| | + | |C3H3NO5 |
| | + | |Peroxyacryloyl nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |APINN |
| | + | |C10H17NO4 |
| | + | |1st gen organic nitrate from APIN |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |APINO2 |
| | + | |C10H17O3 |
| | + | |Peroxy radical from APIN |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |APINP |
| | + | |C10H18O3 |
| | + | |Hydroperoxide from APIN |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |AROMCHO |
| | + | |C5H6O4 |
| | + | |ACCOMECHO from MCM |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |AROMCO3 |
| | + | |C5H5O6 |
| | + | |Lumped aromatic peroxyacetyl radical |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |AROMPN |
| | + | |C5H5NO8 |
| | + | |Lumped PN from aromatics |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |BPINN |
| | + | |C10H17NO4 |
| | + | |Saturated 1st gen BPIN organic nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |BPINO |
| | + | |C9H14O |
| | + | |Ketone from BPIN |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |BPINO2 |
| | + | |C10H17O3 |
| | + | |Peroxy radical from BPIN |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |BPINON |
| | + | |C9H13NO4 |
| | + | |Saturated 2nd gen BPIN organic nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |BPINOO2 |
| | + | |C10H17O3 |
| | + | |2nd-gen peroxy radical from BPIN |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |BPINOOH |
| | + | |C9H14O3 |
| | + | |2nd-gen peroxide from BPIN |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |BPINP |
| | + | |C10H18O3 |
| | + | |Peroxide from BPIN |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |BUTN |
| | + | |C4H7NO4 |
| | + | |C4H6 alkyl nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |BUTO2 |
| | + | |C4H7O3 |
| | + | |peroxy radical from C4H6 |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |C4H6 |
| | + | |C4H6 |
| | + | |1,3-butadiene |
| | + | |X |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |C96N |
| | + | |C9H15NO4 |
| | + | |Saturated 2nd gen monoterpene organic nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |C96O2 |
| | + | |C10H17O3 |
| | + | |2nd-gen peroxy radical from APIN |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |C96O2H |
| | + | |C9H16O3 |
| | + | |Peroxide from APIN 2nd gen |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |EBZ |
| | + | |C8H10 |
| | + | |Ethylbenzene |
| | + | |X |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |GCO3 |
| | + | |HOCH2CO3 |
| | + | |Peroxyacetyl radical for PHAN |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |HACTA |
| | + | |HOCH2CO2H |
| | + | |Hydroxyacetic/glycolic acid |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |LIMAL |
| | + | |C10H16O2 |
| | + | |Aldehyde from limonene |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |LIMKB |
| | + | |C10H16O3 |
| | + | |2nd gen ketone from limonene |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |LIMKET |
| | + | |C10H16O2 |
| | + | |Ketone from limonene |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |LIMKO2 |
| | + | |C10H17O3 |
| | + | |2nd-gen peroxy radical from LIMO |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |LIMN |
| | + | |C10H17NO4 |
| | + | |Saturated 1st gen limonene organic nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |LIMNB |
| | + | |C10H15NO4 |
| | + | |Saturated 1st gen LIMO organic nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |LIMO2H |
| | + | |C10H18O3 |
| | + | |Acid from LIMO |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |LIMO3 |
| | + | |C10H17O3 |
| | + | |Acylperoxy radical from LIMO |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |LIMO3H |
| | + | |C10H18O4 |
| | + | |Peracid from LIMO |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |LIMPAN |
| | + | |C10H17NO4 |
| | + | |PAN from LIMO |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |MEKCO3 |
| | + | |C3H5O4 |
| | + | |False |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |MEKPN |
| | + | |C3H5NO6 |
| | + | |MEK peroxyacetyl nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |MYRCO |
| | + | |C10H18O3 |
| | + | |Aldehyde or ketone from myrcene |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |PHAN |
| | + | |C2H3NO6 |
| | + | |Peroxyhydroxyacetic nitric anhydride |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |PIN |
| | + | |C10H17NO4 |
| | + | |Saturated 1st gen monoterpene organic nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |PINAL |
| | + | |C10H16O2 |
| | + | |Pinonaldehyde |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |PINO3 |
| | + | |C10H17O3 |
| | + | |Acylperoxy radical from APIN |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |PINO3H |
| | + | |C10H18O4 |
| | + | |Pinonic peracid |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |PINONIC |
| | + | |C10H18O3 |
| | + | |Pinonic acid |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |PINPAN |
| | + | |C10H17NO4 |
| | + | |PAN from pinonaldehyde |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |R7N1 |
| | + | |C7H15NO5 |
| | + | |Peroxy radical from R7N2 |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |R7N2 |
| | + | |RO2NO |
| | + | |C7 Lumped alkyl nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |R7O2 |
| | + | |C7H15O2 |
| | + | |Peroxy radical from ALK7 |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |R7P |
| | + | |C7H16O2 |
| | + | |Peroxide from R7O2 |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |RNO3 |
| | + | |RO2NO |
| | + | |Lumped aromatic nitrate |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |STYR |
| | + | |C8H8 |
| | + | |Styrene |
| | + | |X |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |TLFUO2 |
| | + | |C5H7O5 |
| | + | |False |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |TLFUONE |
| | + | |C5H6O2 |
| | + | |Aromatic furanones |
| | + | |X |
| | + | |X |
| | + | |X |
| | + | | |
| | + | |X |
| | + | |
| | + | |-valign='top' |
| | + | |TMB |
| | + | |C8H10 |
| | + | |Trimethylbenzenes |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | + | |-valign='top' |
| | + | |ZRO2 |
| | + | |C7H9O5 |
| | + | |RO2 for making lumped aromatic nitrate |
| | + | | |
| | + | | |
| | + | |X |
| | + | | |
| | + | | |
| | + | |
| | |} | | |} |
| | | | |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 20:32, 14 November 2017 (UTC)
| + | |
| | + | === Species removed=== |
| | | | |
| − | == Collection list ==
| + | Species removed between versions 14.5.0-alpha.5 and 14.5.0-alpha.9: |
| | | | |
| | + | {| border=1 cellspacing=0 cellpadding=5 |
| | + | !width='100px' bgcolor='#CCCCCC'|Name |
| | + | !width='100px' bgcolor='#CCCCCC'|Formula |
| | + | !width='200px' bgcolor='#CCCCCC'|Fullname |
| | + | !width='30px' bgcolor='#CCCCCC'|Advected |
| | + | !width='30px' bgcolor='#CCCCCC'|Dry deposited |
| | + | !width='30px' bgcolor='#CCCCCC'|Gas |
| | + | !width='30px' bgcolor='#CCCCCC'|Photolyzed |
| | + | !width='30px' bgcolor='#CCCCCC'|Wet deposited |
| | | | |
| − | EXPID: OutputDir/GCHP
| + | |} |
| − | EXPDSC: GEOS-Chem_devel
| + | |
| − | CoresPerNode: 6
| + | |
| − | | + | |
| − | #===================================================================
| + | |
| − | # Declare collection names and toggle on/off
| + | |
| − | # by commenting out with a #
| + | |
| − | #===================================================================
| + | |
| − | COLLECTIONS: 'SpeciesConc',
| + | |
| − | 'Aerosols',
| + | |
| − | 'CloudConvFlux',
| + | |
| − | 'ConcAfterChem',
| + | |
| − | 'DryDep',
| + | |
| − | 'JValues',
| + | |
| − | 'JValuesLocalNoon',
| + | |
| − | 'LevelEdgeDiags',
| + | |
| − | 'ProdLoss',
| + | |
| − | 'StateChm',
| + | |
| − | 'StateMet',
| + | |
| − | 'WetLossConv',
| + | |
| − | 'WetLossLS',
| + | |
| − | | + | |
| − | == Species concentrations ==
| + | |
| − | | + | |
| − | # Species concentrations (per advected species)
| + | |
| − | SpeciesConc.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | SpeciesConc.format: 'CFIO',
| + | |
| − | SpeciesConc.frequency: 010000
| + | |
| − | SpeciesConc.duration: 010000
| + | |
| − | SpeciesConc.mode: 'time-averaged'
| + | |
| − | SpeciesConc.fields: 'SpeciesConc_?ADV? ', 'GIGCchem',
| + | |
| − | | + | |
| − | == Aerosol diagnostics ==
| + | |
| − | | + | |
| − | #===================================================================
| + | |
| − | # Aerosol optical depth, surface area, number density, and hygroscopic growth
| + | |
| − | Aerosols.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | Aerosols.format: 'CFIO',
| + | |
| − | Aerosols.frequency: 010000
| + | |
| − | Aerosols.duration: 010000
| + | |
| − | Aerosols.mode: 'time-averaged'
| + | |
| − | Aerosols.fields: 'AODDust ', 'GIGCchem',
| + | |
| − | 'AODDustWL1_?DUSTBIN? ', 'GIGCchem',
| + | |
| − | 'AODHygWL1_?HYG? ', 'GIGCchem',
| + | |
| − | 'AODSOAfromAqIsopreneWL1 ', 'GIGCchem',
| + | |
| − | 'AODStratLiquidAerWL1 ', 'GIGCchem',
| + | |
| − | 'AODPolarStratCloudWL1 ', 'GIGCchem',
| + | |
| − | 'AerHygroscopicGrowth_?HYG? ', 'GIGCchem',
| + | |
| − | 'AerNumDensityStratLiquid ', 'GIGCchem',
| + | |
| − | 'AerNumDensityStratParticulate ', 'GIGCchem',
| + | |
| − | 'AerAqueousVolume ', 'GIGCchem',
| + | |
| − | 'AerSurfAreaDust ', 'GIGCchem',
| + | |
| − | 'AerSurfAreaHyg_?HYG? ', 'GIGCchem',
| + | |
| − | 'AerSurfAreaStratLiquid ', 'GIGCchem',
| + | |
| − | 'AerSurfAreaPolarStratCloud ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaMDUST1 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaMDUST2 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaMDUST3' ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaMDUST4 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaMDUST5 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaMDUST6 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaMDUST7 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaSULF ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaBC ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaOC ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaSSA ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaSSC ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaBGSULF ', 'GIGCchem',
| + | |
| − | 'Chem_AeroAreaICEI ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiMDUST1 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiMDUST2 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiMDUST3 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiMDUST4 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiMDUST5 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiMDUST6 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiMDUST7 ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiSULF ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiBC ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiOC ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiSSA ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiSSC ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiBGSULF ', 'GIGCchem',
| + | |
| − | 'Chem_AeroRadiICEI ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaMDUST1 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaMDUST2 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaMDUST3 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaMDUST4 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaMDUST5 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaMDUST6 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaMDUST7 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaSULF ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaBC ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaOC ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaSSA ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaSSC ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaBGSULF ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroAreaICEI ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiMDUST1 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiMDUST2 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiMDUST3 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiMDUST4 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiMDUST5 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiMDUST6 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiMDUST7 ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiSULF ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiBC ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiOC ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiSSA ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiSSC ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiBGSULF ', 'GIGCchem',
| + | |
| − | 'Chem_WetAeroRadiICEI ', 'GIGCchem',
| + | |
| − | 'Chem_StatePSC ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAN2O5H2O ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAN2O5HCl ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAClNO3H2O ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAClNO3HCl ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAClNO3HBr ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLABrNO3H2O ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLABrNO3HCl ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAHOClHCl ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAHOClHBr ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAHOBrHCl ', 'GIGCchem',
| + | |
| − | 'Chem_KhetiSLAHOBrHBr ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Cloud convective flux ==
| + | |
| − | | + | |
| − | # Cloud convective flux (per advected species)
| + | |
| − | CloudConvFlux.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | CloudConvFlux.format: 'CFIO',
| + | |
| − | CloudConvFlux.frequency: 010000
| + | |
| − | CloudConvFlux.duration: 010000
| + | |
| − | CloudConvFlux.mode: 'time-averaged'
| + | |
| − | CloudConvFlux.fields: 'CloudConvFlux_?ADV? ', 'GIGCchem',
| + | |
| − | | + | |
| − | == Concentrations after chemistry ==
| + | |
| − | | + | |
| − | # Concentrations after chemistry
| + | |
| − | ConcAfterChem.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | ConcAfterChem.format: 'CFIO',
| + | |
| − | ConcAfterChem.frequency: 010000
| + | |
| − | ConcAfterChem.duration: 010000
| + | |
| − | ConcAfterChem.mode: 'time-averaged'
| + | |
| − | ConcAfterChem.fields: 'OHconcAfterChem ', 'GIGCchem',
| + | |
| − | 'HO2concAfterChem ', 'GIGCchem',
| + | |
| − | 'O1DconcAfterChem ', 'GIGCchem',
| + | |
| − | 'O3PconcAfterChem ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Dry deposition diagnostics ==
| + | |
| − | | + | |
| − | # Dry deposition flux velocity (per dry deposited species)
| + | |
| − | DryDep.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | DryDep.format: 'CFIO',
| + | |
| − | DryDep.frequency: 010000
| + | |
| − | DryDep.duration: 010000
| + | |
| − | DryDep.mode: 'time-averaged'
| + | |
| − | DryDep.fields: 'DryDepVel_?DRY? ', 'GIGCchem',
| + | |
| − | 'DryDepMix_?DRY? ', 'GIGCchem',
| + | |
| − | 'DryDepChm_?DRY? ', 'GIGCchem',
| + | |
| − | 'DryDep_?DRY? ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Photolysis diagnostics ==
| + | |
| − | | + | |
| − | # Photolysis rates (J-values)
| + | |
| − | JValues.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | JValues.format: 'CFIO',
| + | |
| − | JValues.frequency: 010000
| + | |
| − | JValues.duration: 010000
| + | |
| − | JValues.mode: 'time-averaged'
| + | |
| − | JValues.fields: 'Jval_?PHO? ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | # Photolysis rates at local noon (J-values)
| + | |
| − | JValuesLocalNoon.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | JValuesLocalNoon.format: 'CFIO',
| + | |
| − | JValuesLocalNoon.frequency: 010000
| + | |
| − | JValuesLocalNoon.duration: 010000
| + | |
| − | JValuesLocalNoon.mode: 'instantaneous'
| + | |
| − | JValuesLocalNoon.fields: 'JNoon_?PHO? ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Diagnostics on level edges ==
| + | |
| − | | + | |
| − | # Level edge diagnostics (73-level only)
| + | |
| − | LevelEdgeDiags.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | LevelEdgeDiags.format: 'CFIO',
| + | |
| − | LevelEdgeDiags.frequency: 010000
| + | |
| − | LevelEdgeDiags.duration: 010000
| + | |
| − | LevelEdgeDiags.mode: 'time-averaged'
| + | |
| − | LevelEdgeDiags.fields: 'Met_CMFMC ', 'GIGCchem',
| + | |
| − | 'Met_PEDGE ', 'GIGCchem',
| + | |
| − | 'Met_PEDGEDRY ', 'GIGCchem',
| + | |
| − | 'Met_PFICU ', 'GIGCchem',
| + | |
| − | 'Met_PFILSAN ', 'GIGCchem',
| + | |
| − | 'Met_PFLCU ', 'GIGCchem',
| + | |
| − | 'Met_PFLLSAN ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Production and loss rates ==
| + | |
| − | | + | |
| − | # Prod/loss rates
| + | |
| − | ProdLoss.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | ProdLoss.format: 'CFIO',
| + | |
| − | ProdLoss.frequency: 010000
| + | |
| − | ProdLoss.duration: 010000
| + | |
| − | ProdLoss.mode: 'time-averaged'
| + | |
| − | ProdLoss.fields: 'PROD_?PRD? ', 'GIGCchem',
| + | |
| − | 'ProdBCPIfromBCPO ', 'GIGCchem',
| + | |
| − | 'ProdOCPIfromOCPO ', 'GIGCchem',
| + | |
| − | 'ProdSO4fromH2O2inCloud ', 'GIGCchem',
| + | |
| − | 'ProdSO4fromO3inCloud ', 'GIGCchem',
| + | |
| − | 'ProdSO4fromO3inSeaSalt ', 'GIGCchem',
| + | |
| − | 'ProdSO4fromHOBrInCloud ', 'GIGCchem',
| + | |
| − | 'ProdSO4fromSRO3 ', 'GIGCchem',
| + | |
| − | 'ProdSO4fromSRHObr ', 'GIGCchem',
| + | |
| − | 'ProdSO4fromO3s ', 'GIGCchem',
| + | |
| − | 'LOSS_?LOS? ', 'GIGCchem',
| + | |
| − | 'LossHNO3onSeaSalt ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Fields of the State_Chm object ==
| + | |
| − | | + | |
| − | # State_Chm array diagnostics (see also Aerosols collection
| + | |
| − | StateChm.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | StateChm.format: 'CFIO',
| + | |
| − | StateChm.frequency: 010000
| + | |
| − | StateChm.duration: 010000
| + | |
| − | StateChm.mode: 'time-averaged'
| + | |
| − | StateChm.fields: 'Chem_phSav ', 'GIGCchem',
| + | |
| − | 'Chem_HplusSav ', 'GIGCchem',
| + | |
| − | 'Chem_WaterSav ', 'GIGCchem',
| + | |
| − | 'Chem_SulRatSav ', 'GIGCchem',
| + | |
| − | 'Chem_NaRatSav ', 'GIGCchem',
| + | |
| − | 'Chem_AcidPurSav ', 'GIGCchem',
| + | |
| − | 'Chem_BiSulSav ', 'GIGCchem',
| + | |
| − | 'Chem_pHCloud ', 'GIGCchem',
| + | |
| − | 'Chem_SSAlk', ', 'GIGCchem',
| + | |
| − | 'Chem_HSO3AQ ', 'GIGCchem',
| + | |
| − | 'Chem_SO3AQ ', 'GIGCchem',
| + | |
| − | 'Chem_fupdateHOBr ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Fields of the State_Met object ==
| + | |
| − | | + | |
| − | # State_Met array diagnostics
| + | |
| − | StateMet.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | StateMet.format: 'CFIO',
| + | |
| − | StateMet.frequency: 010000
| + | |
| − | StateMet.duration: 010000
| + | |
| − | StateMet.mode: 'time-averaged'
| + | |
| − | StateMet.fields: 'Met_AD ', 'GIGCchem',
| + | |
| − | 'Met_AIRDEN ', 'GIGCchem',
| + | |
| − | 'Met_AIRVOL ', 'GIGCchem',
| + | |
| − | 'Met_ALBD ', 'GIGCchem',
| + | |
| − | 'Met_AREAM2 ', 'GIGCchem',
| + | |
| − | 'Met_AVGW ', 'GIGCchem',
| + | |
| − | 'Met_BXHEIGHT ', 'GIGCchem',
| + | |
| − | 'Met_ChemGridLev ', 'GIGCchem',
| + | |
| − | 'Met_CLDF ', 'GIGCchem',
| + | |
| − | 'Met_CLDFRC ', 'GIGCchem',
| + | |
| − | 'Met_CLDTOPS ', 'GIGCchem',
| + | |
| − | 'Met_DELP ', 'GIGCchem',
| + | |
| − | 'Met_DQRCU ', 'GIGCchem',
| + | |
| − | 'Met_DQRLSAN ', 'GIGCchem',
| + | |
| − | 'Met_DTRAIN ', 'GIGCchem',
| + | |
| − | 'Met_EFLUX ', 'GIGCchem',
| + | |
| − | 'Met_FRCLND ', 'GIGCchem',
| + | |
| − | 'Met_FRLAKE ', 'GIGCchem',
| + | |
| − | 'Met_FRLAND ', 'GIGCchem',
| + | |
| − | 'Met_FRLANDIC ', 'GIGCchem',
| + | |
| − | 'Met_FROCEAN ', 'GIGCchem',
| + | |
| − | 'Met_FRSEAICE ', 'GIGCchem',
| + | |
| − | 'Met_FRSNO ', 'GIGCchem',
| + | |
| − | 'Met_GWETROOT ', 'GIGCchem',
| + | |
| − | 'Met_GWETTOP ', 'GIGCchem',
| + | |
| − | 'Met_HFLUX ', 'GIGCchem',
| + | |
| − | 'Met_LAI ', 'GIGCchem',
| + | |
| − | 'Met_LWI ', 'GIGCchem',
| + | |
| − | 'Met_PARDR ', 'GIGCchem',
| + | |
| − | 'Met_PARDF ', 'GIGCchem',
| + | |
| − | 'Met_PBLTOPL ', 'GIGCchem',
| + | |
| − | 'Met_PBLH ', 'GIGCchem',
| + | |
| − | 'Met_PHIS ', 'GIGCchem',
| + | |
| − | 'Met_PMID ', 'GIGCchem',
| + | |
| − | 'Met_PMIDDRY ', 'GIGCchem',
| + | |
| − | 'Met_PRECANV ', 'GIGCchem',
| + | |
| − | 'Met_PRECCON ', 'GIGCchem',
| + | |
| − | 'Met_PRECLSC ', 'GIGCchem',
| + | |
| − | 'Met_PRECTOT ', 'GIGCchem',
| + | |
| − | 'Met_PS1DRY ', 'GIGCchem',
| + | |
| − | 'Met_PS1WET ', 'GIGCchem',
| + | |
| − | 'Met_PS2DRY ', 'GIGCchem',
| + | |
| − | 'Met_PS2WET ', 'GIGCchem',
| + | |
| − | 'Met_PSC2WET ', 'GIGCchem',
| + | |
| − | 'Met_PSC2DRY ', 'GIGCchem',
| + | |
| − | 'Met_QI ', 'GIGCchem',
| + | |
| − | 'Met_QL ', 'GIGCchem',
| + | |
| − | 'Met_OMEGA ', 'GIGCchem',
| + | |
| − | 'Met_OPTD ', 'GIGCchem',
| + | |
| − | 'Met_REEVAPCN ', 'GIGCchem',
| + | |
| − | 'Met_REEVAPLS ', 'GIGCchem',
| + | |
| − | 'Met_SLP ', 'GIGCchem',
| + | |
| − | 'Met_SNODP ', 'GIGCchem',
| + | |
| − | 'Met_SNOMAS ', 'GIGCchem',
| + | |
| − | 'Met_SPHU ', 'GIGCchem',
| + | |
| − | 'Met_SPHU1 ', 'GIGCchem',
| + | |
| − | 'Met_SPHU2 ', 'GIGCchem',
| + | |
| − | 'Met_SUNCOS ', 'GIGCchem',
| + | |
| − | 'Met_SUNCOSmid ', 'GIGCchem',
| + | |
| − | 'Met_SWGDN ', 'GIGCchem',
| + | |
| − | 'Met_T ', 'GIGCchem',
| + | |
| − | 'Met_TAUCLI ', 'GIGCchem',
| + | |
| − | 'Met_TAUCLW ', 'GIGCchem',
| + | |
| − | 'Met_THETA ', 'GIGCchem',
| + | |
| − | 'Met_TMPU1 ', 'GIGCchem',
| + | |
| − | 'Met_TMPU2 ', 'GIGCchem',
| + | |
| − | 'Met_TO3 ', 'GIGCchem',
| + | |
| − | 'Met_TropHt ', 'GIGCchem',
| + | |
| − | 'Met_TropLev ', 'GIGCchem',
| + | |
| − | 'Met_TropP ', 'GIGCchem',
| + | |
| − | 'Met_TS ', 'GIGCchem',
| + | |
| − | 'Met_TSKIN ', 'GIGCchem',
| + | |
| − | 'Met_TV ', 'GIGCchem',
| + | |
| − | 'Met_U ', 'GIGCchem',
| + | |
| − | 'Met_U10M ', 'GIGCchem',
| + | |
| − | 'Met_USTAR ', 'GIGCchem',
| + | |
| − | 'Met_UVALBEDO ', 'GIGCchem',
| + | |
| − | 'Met_V ', 'GIGCchem',
| + | |
| − | 'Met_V10M ', 'GIGCchem',
| + | |
| − | 'Met_Z0 ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Loss of soluble species in cloud updrafts ==
| + | |
| − | | + | |
| − | # Loss due to convection (per wet deposited species)
| + | |
| − | WetLossConv.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | WetLossConv.format: 'CFIO',
| + | |
| − | WetLossConv.frequency: 010000
| + | |
| − | WetLossConv.duration: 010000
| + | |
| − | WetLossConv.mode: 'time-averaged'
| + | |
| − | WetLossConv.fields: 'WetLossConv_?WET? ', 'GIGCchem',
| + | |
| − | ::
| + | |
| − | | + | |
| − | == Loss of soluble species in large-scale wet deposition ==
| + | |
| − | | + | |
| − | # Loss due to rainout and washout (per deposited species)
| + | |
| − | WetLossLS.template: '%y4%m2%d2_%h2%n2z.nc4',
| + | |
| − | WetLossLS.format: 'CFIO',
| + | |
| − | WetLossLS.frequency: 010000
| + | |
| − | WetLossLS.duration: 010000
| + | |
| − | WetLossLS.mode: 'time-averaged'
| + | |
| − | WetLossLS.fields: 'WetLossLS_?WET? ', 'GIGCchem',
| + | |
| − | ::
| + | |
