GEOS-Chem 14.4.0: Difference between revisions
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Revision as of 19:08, 7 May 2024
This page includes information about GEOS-Chem 14.4.0. For a list of updates prioritized for future versions, please see our GEOS-Chem model development priorities page.
Version overview
This version is currently in development
Repository | GitHub Milestone | DOI |
---|---|---|
GCClassic 14.4.0 | 14.4.0 milestone for geoschem/GCClassic | TBD |
GCHP 14.4.0 | 14.4.0 milestone for geoschem/GCHP | TBD |
GEOS-Chem (science codebase) 14.4.0 | 14.4.0 milestone for geoschem/geos-chem | TBD |
HEMCO 3.9.0 | 3.9.0 milestone for geoschem/HEMCO | TBD |
What's new in this version
Updates that will affect full-chemistry benchmark simulations
Feature | Contributor(s) | Model scope | Notes and references |
---|---|---|---|
UCX bug fixes : (1) Use proper 4th index for WERADIUS array; (2) Get density of black carbon from the species database | Bob Yantosca (Harvard) | Aerosols | |
Replace ISORROPIA II with HETP aerosol thermodynamics | Lizzie Lundgren (Harvard) Seb Eastham (ICL) |
Aerosols | |
Parameterized Effective Radius for SNA and OM aerosols | Haihui Zhu (WashU) | Aerosols | |
Use GCARR_ac rate-law function for full-chemistry reactions where the Arrhenius B parameter is zero | Bob Yantosca (Harvard) | Chemistry | |
Fix uptake coefficients on stratospheric aerosol | Chris Holmes (FSU) | Chemistry | |
Updated gravitational settling, dry mass-weighted mean diameters and hygroscopic growth in aerosol dry deposition | Yanshun Li (WashU) | Dry Deposition | |
Global continental chlorine (pCl and HCl) emissions | Bingqing Zhang (Georgia Tech) Pengfei Liu (Georgia Tech) |
Emissions | |
Add diel and day-of-week scale factors to global base emissions | Dandan Zhang (WashU) | Emissions | |
Updated 0.1x0.1 timezone file accounting for daylight savings | Karn Vohra (UCL) | Emissions | |
Update volcano emissions through 2023 | Melissa Sulprizio (Harvard) | Emissions | |
Update surface methane boundary condition using NOAA flask data | Lee Murray (Rochester) | Input data | |
Fix bug in usage of FRSNO met-field | Lizzie Lundgren (Harvard) | Met fields | |
Fix PBL level calculations | Chris Holmes (FSU) | PBL height | |
Only convert units for species that require it | Bob Yantosca | Unit Conversion |
Updates that will NOT affect full-chemistry benchmark simulations
Feature | Contributor(s) | Model scope | Notes and references |
---|---|---|---|
Remove hardcoded year range for met fields, restart, and BC files in HEMCO_Config.rc | Melissa Sulprizio (Harvard) | Bug fix | |
GCHP carbon simulation (and fixes for single-species carbon simulations) | Melissa Sulprizio (Harvard) Bob Yantosca (Harvard) |
Carbon simulation | |
Removing unused carbon simulation options #2266 | Hannah Nesser (JPL) | Carbon simulation | |
Add missing gas postmeter CH4 emissions for the GHGI express extension inventory | Melissa Sulprizio (Harvard) Bob Yantosca (Harvard) |
Carbon simulation CH4 simulation |
|
Bug fix for stretched grid restart attribute check | Lizzie Lundgren (Harvard) | GCHP | |
Updates for GEOS-Chem in GEOS | Christoph Keller (GMAO) Lizzie Lundgren (Harvard) |
GEOS | |
Replace stalebot with "stale" GitHub action | Bob Yantosca (Harvard) | GitHub | |
Allow up to 10 nested brackets in the HEMCO_Config.rc file | Bob Yantosca (Harvard) | HEMCO | |
Rename tags in geoschem_config.yml for nitrate aerosol photolysis as per GCSC suggestion | Bob Yantosca (Harvard) | Run directory | |
Remove remaining binary punch diagnostic code | Bob Yantosca (Harvard) | Structural |
New data directories
The following data directories have been added or updated in this version. You will have to download the directories relevant to your simulation.
Inventory | Simulations | What was added? | Directory |
---|---|---|---|
Updated lookup tables for aerosol optical properties | Aerosol-only Fullchem Hg |
ExtData/CHEM_INPUTS/FAST_JX/v2024-05 ExtData/CHEM_INPUTS/FAST_JX/v2024-05-Hg | |
Updated mask files | CH4 carbon |
|
ExtData/HEMCO/MASKS/v2024-04 |
NOAA GMD CH4 surface boundary conditions | Fullchem | ExtData/HEMCO/NOAA_GMD/v2023-10 | |
Georgia Tech chlorine emissions | Fullchem | ExtData/HEMCO/GT_Chlorine/v2024-05 |
1-month full-chemistry benchmarks
1-month benchmark setup
The following table describes the GEOS-Chem setup for both GEOS-Chem Classic and GCHP 1-month benchmark simulations.
Git tag(s): |
|
Compared to previous benchmark: | 14.3.1 |
Software environment: |
|
Model resolution: |
|
Meteorology fields: | MERRA-2
|
Initial conditions: | July 1, 2019
|
Benchmark month: | July 2019 |
Chemistry setup: | See fullchem.eqn |
This version will impact: (select all that apply with boldface) |
|
1-month internal benchmarks
Each update that will introduce a significant change in the full-chemistry simulation is tagged with an alpha version in Git. For each of these alpha versions, the GCST runs an internal 1-month benchmark simulation to isolate the impact from that update.
For more details on the update(s) included in each alpha version and a link to benchmark results, see this Google sheet.
1-month benchmark assessment form
Performance | GEOS-Chem Classic | GCHP | |
---|---|---|---|
Grid resolution: | 4° x 5° | C24 | |
# CPUs, nodes: | 62 CPUs 1 node (AWS) |
62 CPUs 1 nodes (AWS) | |
Wall time: | 06:12 | 07:06 | |
Memory | 11.5 GB | 42.1 GB | |
Global mean OH: (% change from previous version) |
13.57862664898 x 105 molec/cm3 (-1.06%) |
13.57068350813 x 105 molec/cm3 (-1.18%) | |
Methyl chloroform lifetime: (% change from previous version) |
4.524290 years (0.64%) |
4.502573 years (0.66%) | |
Methane lifetime: (% change from previous version) |
7.627114 years (0.59%) |
7.586405 years (0.61%) | |
Details | |||
Species, J-Values, and COLUMN AOD values that changed by 10% or more at the surface: | GEOS-Chem Classic 14.4.0 vs 14.3.1 | GCHP 14.4.0 vs 14.3.1 | |
Species and J-Values that changed by 10% or more at 500 hPa: | GEOS-Chem Classic 14.4.0 vs 14.3.1 | GCHP 14.4.0 vs 14.3.1 | |
Species and J-Values that changed by 10% or more in zonal mean: | GEOS-Chem Classic 14.4.0 vs 14.3.1 | GCHP 14.4.0 vs 14.3.1 | |
Emissions that changed by 10% or more: | GEOS-Chem Classic 14.4.0 vs 14.3.1 | GCHP 14.4.0 vs 14.3.1 | |
Overview | |||
Below we summarize the notable changes caused by specific updates. See also the internal benchmark results which isolate impacts from specific updates.
1. Add diel and day-of-week scale factors to global base emissions
2. Updated 0.1x0.1 timezone file accounting for daylight savings
3. Updated surface methane boundary condition using NOAA flask data
5. Update volcano emissions through 2023
6. Fix uptake coefficients on stratospheric aerosol
9. Replace ISORROPIA II with HETP aerosol thermodynamics
10. Parameterized Effective Radius for SNA and OM aerosols
11. Global continental chlorine (pCl and HCl) emissions
|
1-month GEOS-Chem Classic version comparison (14.4.0 vs 14.3.1)
Below are links to plots and tables comparing 1-month simulations for GEOS-Chem Classic 14.4.0 (Dev) and GEOS-Chem Classic 14.3.1 (Ref).
Species Category | Plots | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Oxidants
O3, CO, OH, NOx |
sfc | 500hPa | full column | stratosphere | sfc | |
Aerosols
DST1, DST2, DST3, DST4, NH4, NIT, SO4, HMS, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA, pFe |
sfc | 500hPa | full column | stratosphere | column total | AOD |
Bromine
Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr |
sfc | 500hPa | full column | stratosphere | column total | |
Chlorine
Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO |
sfc | 500hPa | full column | stratosphere | -- | |
Iodine
Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO |
sfc | 500hPa | full column | stratosphere | column total | |
Nitrogen
NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3, AONITA, ETHN, BZPAN, NPHEN |
sfc | 500hPa | full column | stratosphere | column total | |
Primary Organics
EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H2, C2H4, C2H6, C3H8, PRPE, TOLU, XYLE |
sfc | 500hPa | full column | stratosphere | column total | |
Secondary Organics
ACTA, ALD2, BALD, CH2O, HPALDs, MACR, IEPOX, ACET, HAC, MEK, MVK, ISOPN, GLYC, GLYX, HCOOH, MAP, PHEN, RCHO, ETHP, MP |
sfc | 500hPa | full column | stratosphere | column total | |
Secondary Organic Aerosols
TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS |
sfc | 500hPa | full column | stratosphere | column total | |
Sulfur
SOx, DMS, HMS, OCS, SO2, SO4 |
sfc | 500hPa | full column | stratosphere | column total | |
ROy
H2O2, H, H2, H2O, HO2, O1D, OH, RO2 |
sfc | 500hPa | full column | stratosphere | -- | |
J-values | sfc | 500hPa | full column | stratosphere | -- | -- |
Emissions by HEMCO category | Total
Aircraft, Anthropogenic, Biomass Burning, Biogenic, Lightning, Natural, Ocean, Seabirds, Decaying Plants, Ship, Soil, Degassing Volcanoes, Erupting Volcanoes | |||||
Emission totals | Tables by species | |||||
Global mass | Entire atmosphere | |||||
Metrics | OH concentration, MCF lifetime, CH4 lifetime | |||||
Timing | GCClassic 14.3.1 vs 14.4.0 GCClassic 14.3.1 vs 14.4.0 |
1-month GCHP version comparison (14.4.0 vs 14.3.1)
Below are links to plots and tables comparing 1-month simulations for GCHP 14.4.0 (Dev) and GCHP 14.3.1 (Ref).
Species Category2 | Plots | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Oxidants
O3, CO, OH, NOx |
sfc | 500hPa | full column | stratosphere | column total | |
Aerosols
DST1, DST2, DST3, DST4, NH4, NIT, SO4, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA, pFe |
sfc | 500hPa | full column | stratosphere | column total | AOD |
Bromine
Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr |
sfc | 500hPa | full column | stratosphere | column total | |
Chlorine
Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO |
sfc | 500hPa | full column | stratosphere | -- | |
Iodine
Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO |
sfc | 500hPa | full column | stratosphere | column total | |
Nitrogen
NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3 |
sfc | 500hPa | full column | stratosphere | column total | |
Primary Organics
EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H6, C3H8, PRPE, TOLU, XYLE |
sfc | 500hPa | full column | stratosphere | column total | |
Secondary Organics
ACTA, ALD2, CH2O, HPALDs, MACR, IEPOX, ACET, HAC, MEK, MVK, ISOPN, GLYC, GLYX, HCOOH, MAP, RCHO, MP |
sfc | 500hPa | full column | stratosphere | column total | |
Secondary Organic Aerosols
TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS |
sfc | 500hPa | full column | stratosphere | column total | |
Sulfur
SOx, DMS, HMS, OCS, SO2, SO4 |
sfc | 500hPa | full column | stratosphere | column total | |
ROy
H2O2, H, H2, H2O, HO2, O1D, OH, RO2 |
sfc | 500hPa | full column | stratosphere | -- | |
J-values | sfc | 500hPa | full column | stratosphere | -- | -- |
Emissions by HEMCO category | Total
Aircraft, Anthropogenic, Biomass Burning, Biogenic, Lightning, Natural, Ocean, Seabirds, Decaying Plants, Ship, Soil, Degassing Volcanoes, Erupting Volcanoes | |||||
Emission totals | Tables by species | |||||
Global mass | Entire atmosphere | |||||
Metrics | OH concentration, MCF lifetime, CH4 lifetime |
1-month GCHP vs GEOS-Chem Classic comparison
Below are links to plots and tables comparing 1-month simulations for GCHP 14.4.0 (Dev) and GEOS-Chem Classic 14.4.0 (Ref).
Species Category2 | Plots | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Oxidants
O3, CO, OH, NOx |
sfc | 500hPa | full column | stratosphere | column total | |
Aerosols
DST1, DST2, DST3, DST4, NH4, NIT, SO4, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA, pFe |
sfc | 500hPa | full column | stratosphere | column total | AOD |
Bromine
Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr |
sfc | 500hPa | full column | stratosphere | column total | |
Chlorine
Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO |
sfc | 500hPa | full column | stratosphere | -- | |
Iodine
Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO |
sfc | 500hPa | full column | stratosphere | column total | |
Nitrogen
NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3 |
sfc | 500hPa | full column | stratosphere | column total | |
Primary Organics
EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H6, C3H8, PRPE, TOLU, XYLE |
sfc | 500hPa | full column | stratosphere | column total | |
Secondary Organics
ACTA, ALD2, CH2O, HPALDs, MACR, IEPOX, ACET, HAC, MEK, MVK, ISOPN, GLYC, GLYX, HCOOH, MAP, RCHO, MP |
sfc | 500hPa | full column | stratosphere | column total | |
Secondary Organic Aerosols
TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS |
sfc | 500hPa | full column | stratosphere | column total | |
Sulfur
SOx, DMS, HMS, OCS, SO2, SO4 |
sfc | 500hPa | full column | stratosphere | column total | |
ROy
H2O2, H, H2, H2O, HO2, O1D, OH, RO2 |
sfc | 500hPa | full column | stratosphere | -- | |
J-values | sfc | 500hPa | full column | stratosphere | -- | -- |
Emissions by HEMCO category | Total
Aircraft, Anthropogenic, Biomass Burning, Biogenic, Lightning, Natural, Ocean, Seabirds, Decaying Plants, Ship, Soil, Degassing Volcanoes, Erupting Volcanoes | |||||
Emission totals | Tables by species | |||||
Global mass | Entire atmosphere | |||||
Metrics | OH concentration, MCF lifetime, CH4 lifetime |
1-month GCHP vs GEOS-Chem-Classic diff-of-diffs
Below are links to plots and tables comparing 1-month simulations for GCHP 14.4.0 - 14.3.1 (Dev) and GEOS-Chem Classic GCHP 14.4.0 - 14.3.1 (Ref).
Species Category2 | Plots | |||
---|---|---|---|---|
Level Map | Zonal Mean | |||
Oxidants
O3, CO, OH, NOx |
sfc | 500hPa | full column | stratosphere |
Aerosols
DST1, DST2, DST3, DST4, NH4, NIT, SO4, BCPI, BCPO, OCPI, OCPO, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, Simple_SOA, Complex_SOA, pFe |
sfc | 500hPa | full column | stratosphere |
Bromine
Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH3Br, CH2Br2, CHBr3, HOBr, HBr |
sfc | 500hPa | full column | stratosphere
|
Chlorine
Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH3CCl3, CHCl3, HOCl, HCl, Halons, HCFCs, OClO |
sfc | 500hPa | full column | stratosphere |
Iodine
Iy, IxOy, I, I2, IBr, ICl, IO, IONO, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO |
sfc | 500hPa | full column | stratosphere
|
Nitrogen
NOy, NOx, HNO2, HNO3, HNO4, MPAN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4, MENO3, ETNO3, IPRNO3, NPRNO3 |
sfc | 500hPa | full column | stratosphere |
Primary Organics
EOH, MOH, ISOP, MTPA, MTPO, LIMO, ALK4, BENZ, CH4, C2H6, C3H8, PRPE, TOLU, XYLE |
sfc | 500hPa | full column | stratosphere |
Secondary Organics
ACTA, ALD2, CH2O, HPALDs, MACR, IEPOX, ACET, HAC, MEK, MVK, ISOPN, GLYC, GLYX, HCOOH, MAP, RCHO, MP |
sfc | 500hPa | full column | stratosphere |
Secondary Organic Aerosols
TSOA0, TSOA1, TSOA2, TSOA3, ASOA1, ASOA2, ASOA3, ASOAN, TSOG0, TSOG1, TSOG2, TSOG3, ASOG1, ASOG2, ASOG3, INDIOL, LVOCOA, SOAIE, SOAGX, SOAP, SOAS |
sfc | 500hPa | full column | stratosphere |
Sulfur
SOx, DMS, OCS, SO2, SO4 |
sfc | 500hPa | full column | stratosphere |
ROy
H2O2, H, H2, H2O, HO2, O1D, OH, RO2 |
sfc | 500hPa | full column | stratosphere |