Benchmark/GEOS-Chem 12.3.2: Difference between revisions

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--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 17:02, 30 April 2019 (UTC)
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 17:02, 30 April 2019 (UTC)
=== Comparison of GCHP and GEOS-Chem Classic ===
This table contains plots comparing GEOS-Chem Classic 12.3.2 (Ref) against GCHP 12.3.2 (Dev) for a 1-month simulation.
{| border=1 cellspacing=0 cellpadding=5
|-
!colspan="1" bgcolor="#CCFFFF"|Category<sup>1</sup>
!colspan="5" bgcolor="#CCFFFF"|Plots<sup>2</sup>
!colspan="1" bgcolor="#CCFFFF"|Additional Information
|-
!colspan="1"|
!colspan="2"|Level Map
!colspan="2"|Zonal Mean
!colspan="1"|Emissions
!colspan="1"|
|-valign="top"
|Primary
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary/Primary_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary/Primary_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary/Primary_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary/Primary_Strat_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary/Primary_Emissions.pdf sfc]
|
|-valign="top"
|Aerosols
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Aerosols/Aerosols_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Aerosols/Aerosols_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Aerosols/Aerosols_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Aerosols/Aerosols_Strat_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Aerosols/Aerosols_Emissions.pdf sfc]
|
|-valign="top"
|Bromine
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Bromine/Bromine_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Bromine/Bromine_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Bromine/Bromine_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Bromine/Bromine_Strat_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Bromine/Bromine_Emissions.pdf sfc]
|
|-valign="top"
|Chlorine
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Chlorine/Chlorine_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Chlorine/Chlorine_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Chlorine/Chlorine_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Chlorine/Chlorine_Strat_ZonalMean.pdf stratosphere]
| --
|
|-valign="top"
|Iodine
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Iodine/Iodine_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Iodine/Iodine_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Iodine/Iodine_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Iodine/Iodine_Strat_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Iodine/Iodine_Emissions.pdf sfc]
|
|-valign="top"
|Nitrogen
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Nitrogen/Nitrogen_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Nitrogen/Nitrogen_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Nitrogen/Nitrogen_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Nitrogen/Nitrogen_Strat_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Nitrogen/Nitrogen_Emissions.pdf sfc]
|
|-valign="top"
|Primary Organics
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary_Organics/Primary_Organics_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary_Organics/Primary_Organics_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary_FullColumn_Organics/Primary_Organics_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary_Strat_Organics/Primary_Organics_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Primary_Organics/Primary_Organics_Emissions.pdf sfc]
|
|-valign="top"
|Secondary Organics
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Secondary_Organics/Secondary_Organics_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Secondary_Organics/Secondary_Organics_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Secondary_FullColumn_Organics/Secondary_Organics_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Secondary_Strat_Organics/Secondary_Organics_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Secondary_Organics/Secondary_Organics_Emissions.pdf sfc]
|
|-valign="top"
|Sulfur
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Sulfur/Sulfur_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Sulfur/Sulfur_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Sulfur/Sulfur_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Sulfur/Sulfur_Strat_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Sulfur/Sulfur_Emissions.pdf sfc]
|
|-valign="top"
|Emissions by HEMCO category
!colspan="5"|
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Aircraft_Emissions.pdf Aircraft],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Anthro_Emissions.pdf Anthro],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Bioburn_Emissions.pdf Bioburn],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Biofuel_Emissions.pdf Biofuel],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Biogenic_Emissions.pdf Biogenic],<br>
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Lightning_Emissions.pdf Lightning],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Monoterp_Emissions.pdf Monoterp],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Natural_Emissions.pdf Natural],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Ocean_Emissions.pdf Ocean],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Seabirds_Emissions.pdf Seabirds],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Senesc_Emissions.pdf SenescingPlants],<br>
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Ship_Emissions.pdf Ship],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Soil_Emissions.pdf Soil],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Total_Emissions.pdf Total],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/VolcDegas_Emissions.pdf VolcDegas],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/VolcErupt_Emissions.pdf VolcErupt],
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/Emissions/Emission_totals.txt Emission totals]
|}
<sup>1</sup>'''Benchmark category definitions:''' [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/output/benchmark_categories.json benchmark_categories.json]<br>
<sup>2</sup>'''Lumped species definitions:''' [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.3.2/GCHP/GCHP_GCC_comparison/output/lumped_species.json lumped_species.json]<br>


=== Comparison of GCHP and GEOS-Chem Classic ===
=== Comparison of GCHP and GEOS-Chem Classic ===

Revision as of 17:10, 30 April 2019

1-month benchmark

Benchmark assessment form

NOTE: This plot is still being filled out.

Description
New features added into GEOS-Chem
Feature Submitted by
Features affecting the full-chemistry simulation:
Fix inconsistency for species H2402 between GCHP and GEOS-Chem "Classic" Sebastian Eastham (MIT)
GCST
Bug fixes for the FAST-JX photolysis mechanism: Bob Yantosca (GCST)
Updates and fixes for HEMCO diagnostics, including:
  • Enable saving out fertilizer NOx emissions
  • Lightning NOx emissions are 3D not, 2D
  • HNO3 ship emissions are 2D, not 3D
  • Update and fill in missing inventory diagnostics (currently used in only in benchmark simulations)
 Melissa Sulprizio (GCST)
Features NOT affecting the full-chemistry simulation:
Extending the CEDS anthropogenic emissions inventory to include 1750-1949 and additional VOC species Melissa Sulprizio (GCST)
Features only affecting GCHP:
Disable Br2 offline seasalt emissions to match GEOS-Chem Classic default Sebastian Eastham (MIT)
Assorted GCHP run directory feature updates
  • Rename Makefile clean and build options
  • Remove deprecated Makefile/build.sh clean and build options
  • Remove aliases from sample run scripts
  • Remove output file runConfig.log; send to gchp.log instead
  • Update benchmark run directory to match GEOS-Chem Classic settings
 Lizzie Lundgren (GCST)
Embed GEOS code within select GCHP files Lizzie Lundgren (GCST)
Version, resolution, met fields used: GEOS-FP (72L), 4x5, July 2016
1-month benchmark finished on:
Performance statistics:
  • Compiled with ifort 17.0.4
  • Ran on 24 CPUs of holy2c12205.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2683 v4 @ 2.10GHz)
  • Wall time: 09:14
  • CPU time / wall time: 20.0261
  • % of ideal performance: 83.44%
  • Memory: TBD GB
Compared to previous benchmark: 12.3.0
This update will impact:
(select all that apply with boldface) 		Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): HEMCO diagnostic output
Unit test results may be viewed at:
Metrics
Global mean OH from log file (% change): 12.5657321664519 x 105 molec/cm3 (0.27%)
Methyl chloroform lifetime (% change): 4.9303 years (-0.36%)
Methane lifetime (% change): 8.3059 years (-0.39%)
At the SURFACE, list all species that changed by 10% or more:
Comments on SURFACE differences:
Comments on 500 hPa differences:
  • See comments for surface differences
In the ZONAL MEAN differences, list all species that changed by 10% or more:
Comments on ZONAL MEAN differences:
  • See comments for surface differences
In the EMISSION RATIO maps, list all species that changed by 10% or more: None
Comments on EMISSION RATIO differences: Emissions in 12.3.2 are 100% identical to 12.3.0
Additional or summary comments: The bug fixes for FAST-JX resulted in very small changes w/r/t the 12.3.0 1-month benchmark:
  • Mean OH changed by +0.2782%
  • MCF lifetime changed by -0.3597%
  • CH4 lifetime changed by -0.3936%

The fix to make species H2402 consistent between GCHP and GC "Classic" resulted in very minor additional changes on top of the FAST-JX fixes:

  • Mean OH changed by -0.0002%
  • MCF lifetime was unchanged
  • CH4 lifetime changed by +0.0012%

So it appears that most of the changes between 12.3.0 and 12.3.2 are being driven by the bug fixes to FAST-JX.

Comments on additional differences in GCHP: To be filled out by GCHP WG
Approval
Requires further investigation:
Approved by:
Date of approval:

--Bob Yantosca (talk) 20:19, 25 April 2019 (UTC)

GCHP 1-month benchmark

The following sections contain validation plots for GCHP 12.3.2.

Comparison of GCHP versions

This table contains plots comparing GCHP 12.3.0 (Ref) and GCHP 12.3.2 (Dev) for a 1-month simulation.

Category1 Plots2 Additional Information
Level Map Zonal Mean Emissions
Primary sfc 500hPa full column stratosphere sfc
Aerosols sfc 500hPa full column stratosphere sfc
Bromine sfc 500hPa full column stratosphere sfc
Chlorine sfc 500hPa full column stratosphere --
Iodine sfc 500hPa full column stratosphere sfc
Nitrogen sfc 500hPa full column stratosphere sfc
Primary Organics sfc 500hPa full column stratosphere sfc
Secondary Organics sfc 500hPa full column stratosphere sfc
Sulfur sfc 500hPa full column stratosphere sfc
Emissions by HEMCO category

Aircraft, Anthro, Bioburn, Biofuel, Biogenic,
Lightning, Monoterp, Natural, Ocean, Seabirds, SenescingPlants,
Ship, Soil, Total, VolcDegas, VolcErupt,

Emission totals

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json

--Bob Yantosca (talk) 17:02, 30 April 2019 (UTC)

Comparison of GCHP and GEOS-Chem Classic

This table contains plots comparing GEOS-Chem Classic 12.3.2 (Ref) against GCHP 12.3.2 (Dev) for a 1-month simulation.

Category1 Plots2 Additional Information
Level Map Zonal Mean Emissions
Primary sfc 500hPa full column stratosphere sfc
Aerosols sfc 500hPa full column stratosphere sfc
Bromine sfc 500hPa full column stratosphere sfc
Chlorine sfc 500hPa full column stratosphere --
Iodine sfc 500hPa full column stratosphere sfc
Nitrogen sfc 500hPa full column stratosphere sfc
Primary Organics sfc 500hPa full column stratosphere sfc
Secondary Organics sfc 500hPa full column stratosphere sfc
Sulfur sfc 500hPa full column stratosphere sfc
Emissions by HEMCO category

Aircraft, Anthro, Bioburn, Biofuel, Biogenic,
Lightning, Monoterp, Natural, Ocean, Seabirds, SenescingPlants,
Ship, Soil, Total, VolcDegas, VolcErupt,

Emission totals

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json

--Bob Yantosca (talk) 17:02, 30 April 2019 (UTC)

GCHP and GEOS-Chem Classic difference of differences

This table contains plots comparing the difference of GEOS-Chem Classic 12.3.2 - GEOS-Chem Classic 12.3.0 (Ref) against GCHP 12.3.2 - GCHP 12.3.0 (Dev), from 1-month benchmark simulations.

Category1 Plots2
Level Map Zonal Mean
Primary sfc 500hPa full column stratosphere
Aerosols sfc 500hPa full column stratosphere
Bromine sfc 500hPa full column stratosphere
Chlorine sfc 500hPa full column stratosphere
Iodine sfc 500hPa full column stratosphere
Nitrogen sfc 500hPa full column stratosphere
Primary Organics sfc 500hPa full column stratosphere
Secondary Organics sfc 500hPa full column stratosphere
Sulfur sfc 500hPa full column stratosphere

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json

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