GEOS-Chem species: Dry deposition metadata

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This Guide has not been updated since GEOS-Chem 12.8.0. Species properties for newer GEOS-Chem versions are now contained in the species_database.yml run-directory configuration file.



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  1. Species in GEOS-Chem
  2. Henry's law parameters
  3. Dry deposition parameters
  4. Wet deposition parameters
  5. GEOS-Chem species database
  6. GEOS-Chem species units
  7. Adding passive species to GEOS-Chem
  8. Species indexing in GEOS-Chem


Overview

Each dry-depositing GEOS-Chem species has one or more of the following properties defined, depending on whether it is an aerosol or gas:

Properties for aerosol species

Quantity Units Description
DD_AeroDryDep 1 For sea salt species, set this to TRUE. This will use dry deposition routine AERO_SFCRSII to perform aerodynamic dry deposition accounting for hygroscopic growth.
DD_DustDryDep 1 For mineral dust species, set this to TRUE. This will use dry deposition routine DUST_SFCRSII to perform aerodynamic dry deposition omitting hygroscopic growth.
DD_DvzAerSnow cm/s For certain aerosol species, DD_DvzAerSnow specifies the dry deposition velocity over ice and snow. This usually 0.03 cm/s.
DD_DvzMinVal cm/s A 2-element vector that specifies the minimum dry deposition velocity for sulfate species SO2, SO4, MSA, NH3, NH4, NIT. This follows the methodology of the GOCART model).
  • DD_DvzMinVal(1): Specifies minimum drydep velocity over snow/ice
  • DD_DvzMinVal(2): Specifies minimum drydep velocity over land

--Bob Yantosca (talk) 21:46, 12 May 2020 (UTC)

Properties for gas-phase species

Quantity Units Description
DD_Hstar M atm-1 This is the Henry's law solubility constant (for T = 298.15 K and pH = 7) that is used in the GEOS-Chem dry deposition module. We use pH = 7 because this is the pH value of plant stomata.

NOTE: the DD_Hstar value as used in the GEOS-Chem dry deposition module is tuned to produce the correct depositon velocity. So that is why species can have different values for DD_Hstar and Henry_K0.

DD_F0 1 Reactivity factor for oxidation of biological substances
DD_KOA 1 Octanol-air partition coefficient, used for the POPG tracer in Persistant Organic Pollutant (POPs) specialty simulations.

--Bob Yantosca (talk) 21:48, 12 May 2020 (UTC)

Table of dry deposition parameters

Search for species alphabetically: (A-B-C) (D-E-F-G) (H) (I) (K-L-M) (N-O) (P-Q) (R through Z)


A-B-C

Aerosol Species Parameters Gas-Phase Species Parameters
Species MW_g
[g mol-1]
EmMW_g
[g mol-1]
Molec
Ratio

[1]
Radius
[m]
Density
[kg m-3]
DD_Aero
Drydep

[1]
DD_Dust
Drydep

[1]
DD_Dvz
AerSnow

[cm s-1]
DD_Dvz
MinVal

[cm s-1]
DD_Hstar
[M atm-1]
DD_F0
[1]
References
ACET 58.09 12.0 3.0 - - - - - - 1.0E+05 1.0 Karl et al 2010
ACTA 60.06 - - - - - - - - 4.1E+3 1.0 -
AERI 126.9 - - - - - - 0.03 0.01 snow
0.01 land
4.1E+3 0.0 -


ALD2 44.06 12.0 2.0 - - - - - - 1.1E+01 1.0 Karl et al 2010
ASOA1
ASOA2
ASOA3
ASOAN
150.0 - - - - - - 0.03 - - - -
ASOG1
ASOG2
ASOG3
150.0 - - - - - - - - 1.0E+05 0.0 -
ATOOH 90.09 - - - - - - - - 2.9E+02 1.0 -
BCPI
BCPO
12.01 - - - 1800.0 - - 0.03 - - - -
Be7
Be7Strat
7.0 - - - - - - 0.03 - - - -
Be10
Be10Strat
10.0 - - - - - - 0.03 - - - -
Br2 159.8 - - - - - - - - 7.6E-01 0.0 -
BrNO3 141.91 - - - - - - - - 1.0E+20 0.0
BrSALA 79.9 - - 2.55E-07 2200.0 YES NO - - - - -
BrSALC 79.9 - - 4.25E-06 2200.0 YES NO - - - - -
CH2O 30.03 - - - - - - - - 3.0E+03 1.0 Karl et al 2010
ClNO3 97.45 - - - - - - - - 1.0E+20 0.0 -

D-E-F-G

Aerosol Species Parameters Gas-Phase Species Parameters
Species MW_g
[g mol-1]
EmMW_g
[g mol-1]
Molec
Ratio

[1]
Radius
[m]
Density
[kg m-3]
DD_Aero
Drydep

[1]
DD_Dust
Drydep

[1]
DD_Dvz
AerSnow

[cm s-1]
DD_Dvz
MinVal

[cm s-1]
DD_Hstar
[M atm-1]
DD_F0
[1]
References
DST1
DSTAL1
29.0 - - 7.3e-07 2500.0 NO YES - - - - -
DST2
DSTAL2
29.0 - - 1.4e-06 2650.0 NO YES - - - - -
DST3
DSTAL3
29.0 - - 2.4e-06 2650.0 NO YES - - - - -
DST4
DSTAL4
29.0 - - 4.5e-06 2650.0 NO YES - - - - -
EOH 46.08 12.0 2.0 - - - - - - 1.9E+02 0.0 -
ETNO3 91.08 - - - - - - - - 1.6 0.1 -
ETHLN 105.06 - - - - - - - - 2.0e+6 1.0 -
ETP 62.08 - - - - - - - - 294.0 1.0 -
GLYC 60.06 - - - - - - - - 1.0 -
GLYX 58.04 - - - - - - - - 360000.0 1.0

H

Aerosol Species Parameters Gas-Phase Species Parameters
Species MW_g
[g mol-1]
EmMW_g
[g mol-1]
Molec
Ratio

[1]
Radius
[m]
Density
[kg m-3]
DD_Aero
Drydep

[1]
DD_Dust
Drydep

[1]
DD_Dvz
AerSnow

[cm s-1]
DD_Dvz
MinVal

[cm s-1]
DD_Hstar
[M atm-1]
DD_F0
[1]
References
H2O2 34.02 - - - - - - - - 5.0E+7 1.0
HAC 74.08 - - - - - - - - 1.4E+6 1.0 -
HBr 80.91 - - - - - - - - 7.1E+15 0.0 -
HC5A 100.13 - - - - - - - - 7.8E+3 0.0 Bates & Jacob 2019
HCl 36.45 - - - - - - - - 2.05e+13 0.0 -
HCOOH 46.03 - - - - - - - - 8.9e+3 1.0 -
Hg0 200.59 - - - - - - - - 0.11 1e-05 -
Hg2 200.59 - - - - - - - - 1.0E+14 0.0 -
HgP 200.59 - - - - - - 0.03 - - - -
HI 127.91 - - - - - - - - 2.35e+16 0.0
HMHP 64.05 - - - - - - - - 1.3E+6 1.0
HMHP 64.05 - - - - - - - - 1.3E+6 1.0
HNO3 63.01 - - - - - - - - 1.0E+14 0.0
HOBr 96.91 - - - - - - - - 6100.0 0.0 -
HOCl 52.45 - - - - - - - - 650.0 0.0 -
HOI 143.89 - - - - - - - - 15400.0 0.0 -
HONIT 215.0 - - - - - - - - 2.0E+6 1.0 -
HPALD1 116.13 - - - - - - - - 4.0E+4 0.0 -
HPALD2 116.13 - - - - - - - - 4.0E+4 0.0 -
HPALD3 116.13 - - - - - - - - 4.0E+4 0.0 -
HPALD4 116.13 - - - - - - - - 4.0E+4 0.0 -
HPETHNL 76.06 - - - - - - - - 4.1E+4 1.0 -

I

Aerosol Species Parameters Gas-Phase Species Parameters
Species MW_g
[g mol-1]
EmMW_g
[g mol-1]
Molec
Ratio

[1]
Radius
[m]
Density
[kg m-3]
DD_Aero
Drydep

[1]
DD_Dust
Drydep

[1]
DD_Dvz
AerSnow

[cm s-1]
DD_Dvz
MinVal

[cm s-1]
DD_Hstar
[M atm-1]
DD_F0
[1]
References
I2 253.8 - - - - - - - - 2.7 0.0 -
I2O2 285.8 - - - - - - - - 1.0E+20 0.0 -
I2O3 301.8 - - - - - - - - 1e+20 0.0 -
I2O4 317.8 - - - - - - - - 1e+20 0.0 -
IBr 206.9 - - - - - - - - 24.3 0.0 -


ICHE 116.13 - - - - - - - - 8.0E+7 1.0 Bates & Jacob 2019
ICl 162.45 - - - - - - - - 111.0 0.0 -
ICN 145.13 - - - - - - - - 2.0E+6 1.0 -
ICPDH 150.15 - - - - - - - - 1.0E+8 1.0 -
IDC 98.11 - - - - - - - - 4.0E+4 0.0 -
IDCHP 148.13 - - - - - - - - 1.0E+8 1.0 -
IDHDP 168.17 - - - - - - - - 1.0E+8 1.0 -
IDHPE 150.15 - - - - - - - - 1.0E+8 1.0 -
IDN 192.15 - - - - - - - - 1.0E+8 1.0 -
IEPOXA 106.14 - - - - - - - - 8.0E+7 1.0 -
IEPOXB 106.14 - - - - - - - - 8.0E+7 1.0 -
IEPOXD 106.14 - - - - - - - - 8.0E+7 1.0 -
IHN1 147.15 - - - - - - - - 2.0E+6 1.0 -
IHN2 147.15 - - - - - - - - 2.0E+6 1.0 -
IHN3 147.15 - - - - - - - - 2.0E+6 1.0 -
IHN4 147.15 - - - - - - - - 2.0E+6 1.0 -
INDIOL 102.0 - - - - - - 0.03 - - - -
INPB 163.15 - - - - - - - - 2.0E+6 1.0 -
INPD 163.15 - - - - - - - - 2.0E+6 1.0 -
IONITA 14.01 - - - - - - 0.03 - - - -
IONO 172.91 - - - - - - - - 0.3 0.0 -
IONO2 188.91 - - - - - - - - 1e+20 0.0 -
IPRNO3 105.11 - - - - - - - - 0.79 0.1 -
ISALA 126.9 - - 2.55e-07 2200.0 YES NO - - - - -
ISALC 126.9 - - 4.25e-06 2200.0 YES NO - - - - -
ITCN 195.15 - - - - - - - - 1.0E+8 1.0 -
ITHN 197.17 - - - - - - - - 1.0E+8 1.0 -

K-L-M

Aerosol Species Parameters Gas-Phase Species Parameters
Species MW_g
[g mol-1]
EmMW_g
[g mol-1]
Molec
Ratio

[1]
Radius
[m]
Density
[kg m-3]
DD_Aero
Drydep

[1]
DD_Dust
Drydep

[1]
DD_Dvz
AerSnow

[cm s-1]
DD_Dvz
MinVal

[cm s-1]
DD_Hstar
[M atm-1]
DD_F0
[1]
References
LIMO 136.26 - - - - - - - - 0.07 0.0 -
LVOC 154.19 - - - - - - - - 1.0E+8 1.0 -
LVOCOA 154.19 - - - - - - 0.03 - - - -
MACR 70.1 - - - - - - - - 6.5 1.0 -
MACR1OOH 102.1 - - - - - - - - 294.0 1.0 -
MAP 76.06 - - - - - - - - 840.0 1.0 -
MCRDH 104.12 - - - - - - - - 1.4E+6 1.0 -
MCRENOL 86.1 - - - - - - - - 294.0 1.0 -
MCRHN 149.11 - - - - - - - - 2.0E+6 1.0 -
MCRHNB 149.11 - - - - - - - - 2.0E+6 1.0 -
MCRHP 120.12 - - - - - - - - 1.4E+6 1.0 -
MENO3 77.05 - - - - - - - - 2.0 0.1 -
MGLY 72.07 - - - - - - - - 3700.0 1.0 -
MOH 32.05 - - - - - - - - 203.0 1.0 -
MONITA 14.01 - - - - - - 0.03 - - - -
MONITS 215.28 - - - - - - - - 2.0E+6 1.0 -
MONITU 215.28 - - - - - - - - 2.0E+6 1.0 -
MOPI 12.01 - - - 1300.0 - - 0.03 - - - -
MPAN 147.1 - - - - - - - - 1.72 1.0 -
MSA 96.1 - - - - - - 0.03 0.01 snow
0.01 land
- - -
MTPA 136.26 - - - - - - - - 0.049 0.0 -
MTPO 136.26 136.23 - - - - - - - 0.049 0.0 -
MVK 70.09 - - - - - - - - 44.0 1.0 -
MVKDH 105.13 - - - - - - - - 1.4E+6 1.0 -
MVKHC 102.1 - - - - - - - - 1.4E+6 1.0 -
MVKHCB 102.1 - - - - - - - - 1.4E+6 1.0 -
MVKHP 120.12 - - - - - - - - 1.4E+6 1.0 -
MVKN 149.12 - - - - - - - - 2.0E+6 1.0 -
MVKPC 118.1 - - - - - - - - 1.4E+6 1.0 -

N-O

Aerosol Species Parameters Gas-Phase Species Parameters
Species MW_g
[g mol-1]
EmMW_g
[g mol-1]
Molec
Ratio

[1]
Radius
[m]
Density
[kg m-3]
DD_Aero
Drydep

[1]
DD_Dust
Drydep

[1]
DD_Dvz
AerSnow

[cm s-1]
DD_Dvz
MinVal

[cm s-1]
DD_Hstar
[M atm-1]
DD_F0
[1]
References
N2O5 108.02 - - - - - - - - 1.0E+14 0.0 -
NH3 17.04 - - - - - - 0.03 0.2 snow
0.3 land
20000.0 0.0 -
NH4 18.05 - - - - - - 0.03 0.01 snow
0.01 land
- - -
NIT 62.01 - - - - - - 0.03 0.01 snow
0.01 land
- - -
NITD1 29.0 - - 7.3e-07 2500.0 NO YES - - - - -
NITD2 29.0 - - 1.4e-06 2650.0 NO YES - - - - -
NITD3 29.0 - - 2.4e-06 2650.0 NO YES - - - - -
NITD4 29.0 - - 4.5e-06 2650.0 NO YES - - - - -
NITs 31.4 - - 4.25e-06 2200.0 YES NO - - - - -
NO2 46.01 - - - - - - - - 0.01 0.1 Karl et al 2010
NPRNO3 105.11 - - - - - - - - 1.1 0.1 -
O3 48.0 - - - - - - - - 0.01 1.0 Karl et al 2010
OCPI
OCPO
12.01 - - - 1300.0 - - 0.03 - - - -
OPOA1
OPOA2
12.01 - - - - - - 0.03 - - - -
OPOG1
OPOG2
- - - - - - - - - 100000.0 0.0 -

P-Q

Aerosol Species Parameters Gas-Phase Species Parameters
Species MW_g
[g mol-1]
EmMW_g
[g mol-1]
Molec
Ratio

[1]
Radius
[m]
Density
[kg m-3]
DD_Aero
Drydep

[1]
DD_Dust
Drydep

[1]
DD_Dvz
AerSnow

[cm s-1]
DD_Dvz
MinVal

[cm s-1]
DD_Hstar
[M atm-1]
DD_F0
[1]
References
PAN 121.06 - - - - - - - - 3.6 1.0 -
Pb210
Pb210Strat
210.0 - - - - - - 0.03 - - 0.0 -
POA1
POA2
12.01 - - - 1300.0 - - 0.03 - - - -
POG1
POG2
12.01 - - - - - - - - 9.5 0.0 -
POPG_BaP 252.32 - - - - - - - - 1319.4 0.0 -
POPG_PHE 178.24 - - - - - - - - 23.5 0.0 -
POPG_PYR 202.26 - - - - - - - - 76.16 0.0 -
POPBCPI_BaP 252.32 - - - - - - 0.03 - - - -
POPBCPI_PHE 178.24 - - - - - - 0.03 - - - -
POPBCPI_PYR 202.26 - - - - - - 0.03 - - - -


POPBCPO_BaP 252.32 - - - - - - 0.03 - - - -
POPBCPO_PHE 178.24 - - - - - - 0.03 - - - -
POPBCPO_PYR 202.26 - - - - - - 0.03 - - - -
POPOCPI_BaP 252.32 - - - - - - 0.03 - - - -
POPOCPI_PHE 178.24 - - - - - - 0.03 - - - -
POPOCPI_PYR 202.26 - - - - - - 0.03 - - - -
POPOCPO_BaP 252.32 - - - - - - 0.03 - - - -
POPOCPO_PHE 178.24 - - - - - - 0.03 - - - -
POPOCPO_PYR 202.26 - - - - - - 0.03 - - - -
PP 92.11 - - - - - - - - 294.0 1.0 -
PPN 135.08 - - - - - - - - 3.6 1.0 -
PROPNN 119.08 - - - - - - - - 500000.0 1.0 -
PRPN 137.11 - - - - - - - - 294.0 1.0 -
PYAC 88.07 - - - - - - - - 3.14E+5 1.0 -

R through Z

Aerosol Species Parameters Gas-Phase Species Parameters
Species MW_g
[g mol-1]
EmMW_g
[g mol-1]
Molec
Ratio

[1]
Radius
[m]
Density
[kg m-3]
DD_Aero
Drydep

[1]
DD_Dust
Drydep

[1]
DD_Dvz
AerSnow

[cm s-1]
DD_Dvz
MinVal

[cm s-1]
DD_Hstar
[M atm-1]
DD_F0
[1]
References
R4N2 119.1 - - - - - - - - 17000.0 1.0 -
R4P 90.14 - - - - - - - - 294.0 1.0 -
RA3P
RB3P
76.11 - - - - - - - - 294.0 1.0 -
RIPA
RIPB
RIPC
RIPD
118.15 - - - - - - - - 1.7E+6 1.0 -
RP 90.09 - - - - - - - - 294.0 1.0 -
SALA 31.4 - - 2.55e-07 2200.0 YES NO - - - - -
SALC 31.4 - - 4.25e-06 2200.0 YES NO - - - - -
SO2 64.04 - - - - - - 0.03 0.2 snow
0.3 land
1.0E+5 - -
SO4 96.06 - - - 1700.0 - - 0.03 0.01 snow
0.01 land
- - -
SO4D1 29.0 7.3e-07 2500.0 NO YES
SO4D2 29.0 1.4e-06 2650.0 NO YES
SO4D3 29.0 2.4e-06 2650.0 NO YES
SO4D4 29.0 4.5e-06 2650.0 NO YES
SO4s 31.4 - - 4.25e-06 2200.0 YES NO - - - - -
SOAGX 58.04 - - - - - - 0.03 - - - -
SOAIE 118.15 - - - - - - 0.03 - - - -
SOAS 150.0 - - - - - - 0.03 - - - -
TSOA0
TSOA1
TSOA2
TSOA3
150.0 - - - - - - 0.03 - - - -
TSOG0
TSOG1
TSOG2
TSOG3
150.0 150.0 - - - - - - - 1.0E+5 0.0 -

References

To be added



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