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| − | ==feel free to experiment here ==
| + | On this page we describe the directory tree from which the [[HEMCO|HEMCO emissions component]] can read emissions inventories and other atmospheric data sets. |
| | | | |
| | == Overview == | | == Overview == |
| | | | |
| − | === An introduction to netCDF diagnostics ===
| + | The [[HEMCO|HEMCO emissions component]] can read several types of emission inventories, as well as other types atmospheric data sets, such as production and loss rates, or concentration data. We have collated all of this data into a comprehensive directory tree structure. Each folder of the HEMCO data directory tree represents a particular emissions inventory or other data set. |
| | | | |
| − | Bob Yantosca has created [[Media:Netcdf_Diagnostics.pdf|an overview presentation about the new netCDF diagnostics for v11-02]].
| + | At present, the HEMCO data directory tree resides on the Compute Canada and AWS s3://gcgrid bucket. We have created a package that will let you download this directory tree to your local disk storage space. For more information, please see the [[#Downloading_the_HEMCO_data_directories|''Downloading the HEMCO data directories'']] section below. |
| | | | |
| − | === Sample HISTORY.rc diagnostic input file === | + | == Data directories by GEOS-Chem version == |
| | | | |
| − | Here is a sample <tt>HISTORY.rc</tt> file that is used to request netCDF diagnostic output from a GEOS-Chem “Classic” simulation.
| + | Our [https://github.com/geoschem/input-data-catalogs/Github repository named '''input-data-catalogs'''] contains lists of input files needed to run GEOS-Chem simulations. These are contained in the comma-separated files <tt>ChemistryInputs.csv</tt>, <tt>EmissionInputs.csv</tt> and <tt>InitialConditions.csv</tt>. Passing these files to the [https://github.com/LiamBindle/bashdatacatalog <tt>bashdatacatalog</tt>] utility will download the data to your local disk storage]. |
| | | | |
| − | #===================================================================
| + | {| border=1 cellspacing=0 cellpadding=5 |
| − | # Declare collection names. Disable collections by commenting
| + | |-bgcolor="#CCCCCC" |
| − | # each collection name out with a "#" character.
| + | !width="150px"|Version |
| − | #===================================================================
| + | !width="200px"|Chemistry Inputs |
| − | COLLECTIONS: <span style="color:red">'SpeciesConc'</span>,
| + | !width="200px"|Emissions Inputs |
| − | <span style="color:blue">'ConcAfterChem'</span>,
| + | !width="200px"|Initial Conditions |
| − | ::
| + | |
| − | #===================================================================
| + | |
| − | # Collection to save out GEOS-Chem species concentrations
| + | |
| − | #===================================================================
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:gray">template: '%y4%m2%d2_%h2%n2z.nc4'</span>,
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:darkorange">frequency: 060000</span>,
| + | |
| − | <span style="color:red">SpeciesConc</span>.format: 'CFIO',
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:purple">duration: 240000</span>,
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:brown">mode: 'instantaneous'</span>,
| + | |
| − | <span style="color:red">SpeciesConc</span>.<span style="color:green">fields: 'SpeciesConc_?ADV?'</span>, 'GIGCchem',
| + | |
| − | ::
| + | |
| − | #===================================================================
| + | |
| − | # Collection to save out concentrations after chemistry
| + | |
| − | # (from the FlexChem/KPP solver)
| + | |
| − | #===================================================================
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:gray">template: '%y4%m2%d2_%h2%n2z.nc4'</span>,
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:magenta">frequency: 000100 000000</span>,
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.format: 'CFIO',
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:purple">duration: 000100 000000</span>,
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:darkcyan">mode: 'time-averaged'</span>,
| + | |
| − | <span style="color:blue">ConcAfterChem</span>.<span style="color:green">fields: 'OHconcAfterChem'</span>, 'GIGCchem',
| + | |
| − | <span style="color:green">'HO2concAfterChem'</span>, 'GIGCchem',
| + | |
| − | <span style="color:green">'O1DconcAfterChem'</span>, ‘GIGCchem’,
| + | |
| − | <span style="color:green">'O3PconcAfterChem'</span>, ‘GIGCchem’,
| + | |
| − | ::
| + | |
| | | | |
| − | In this <tt>HISTORY.rc</tt> file, we are requesting two collections, or types of netCDF file output.
| + | |-valign="top" halign="center" |
| − | | + | |[[GEOS-Chem 13.4.0]] |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | | |
| − | |-valign="top" bgcolor="#CCCCCC" | + | | |
| − | !width="200px"|Attribute
| + | |
| − | !width="900px"|Explanation
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span></tt>
| + | |
| − | |Name of the first collection in this <tt>HISTORY.rc</tt> file. A collection is a series of files containing the same GEOS-Chem diagnostic quantities.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:gray">template</span></tt>
| + | |
| − | |Determines the date and time format for each netCDF file name belonging to the <tt><span style="color:red">SpeciesConc</span></tt> collection.
| + | |
| − | *The string <tt>%y4%m2%d2_%h2%n2z.nc4</tt> will print <tt>YYYYMMDD_hhmmz.nc4</tt> to the end of each netCDF filename
| + | |
| − | **<tt>YYYYMMDD</tt> is the date in year/month/day format
| + | |
| − | **<tt>hhmm</tt> is the time in hour:minutes format.
| + | |
| − | **<tt>z</tt> denotes "Zulu", which is an abbreviation for UTC time.
| + | |
| − | **<tt>.nc4</tt> denotes that the data file is in the netCDF-4 format.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:darkorange">frequency</span></tt>
| + | |
| − | |Determines how often the diagnostic quantities belonging to <tt><span style="color:red">SpeciesConc</span></tt> collection will be saved to a netCDF file.
| + | |
| − | *This can be specified as either "<tt>hhmmss</tt>" or "<tt>YYMMDD hhmmss</tt>".
| + | |
| − | *In the above example, data belonging to the <tt><span style="color:red">SpeciesConc</span></tt> collection will be written to the file <span style="color:darkorange">every 6 hours</span>. (Because <tt><span style="color:red">SpeciesConc</span></tt> is an <span style="color:brown">instantaneous</span> collection, no time-averaging will be performed.)
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.format</tt>
| + | |
| − | |Indicates the I/O library that will be used (for GCHP simulations only).
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:purple">duration</span></tt>
| + | |
| − | |Determines how often a new <tt><span style="color:red">SpeciesConc</span></tt> netCDF file will be created.
| + | |
| − | *This can be specified as either <tt>hhmmss</tt> or <tt>YYMMDD hhmmss</tt>.
| + | |
| − | *In the above example, a new <tt><span style="color:red">SpeciesConc</span></tt> netCDF file will be created <span style="color:purple">every 24 hours</span>.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:brown">mode</span></tt>
| + | |
| − | |Determines the averaging method for the <tt><span style="color:red">SpeciesConc</span></tt> collection
| + | |
| − | *In this example, <tt><span style="color:red">SpeciesConc</span></tt> is defined as an <tt><span style="color:brown">instantaneous</span></tt> (aka "time-series") collection.
| + | |
| − | *Diagnostic quantities belonging to <tt><span style="color:red">SpeciesConc</span></tt> will be written directly to disk without any temporal averaging, at the specified <tt><span style="color:darkorange">frequency</span></tt>.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:red">SpeciesConc</span>.<span style="color:green">fields</span></tt>
| + | |
| − | |Lists the diagnostic quantities to be included in the <tt><span style="color:red">SpeciesConc</span></tt> collection.
| + | |
| − | *In the above example, we are requesting to archive the <span style="color:green">concentrations of all advected species</span> to the <tt><span style="color:red">SpeciesConc</span></tt> collection.
| + | |
| − | *The text <tt>'GIGCchem'</tt> is only needed for GCHP simulations. It is ignored for GEOS-Chem "Classic" simulations. We keep the <tt>'GIGCchem'</tt> in the file in order <tt>HISTORY.rc</tt> files to be interchanged between GEOS-Chem "Classic" and GCHP simulations.
| + | |
| − | | + | |
| − | See the sections below contain in-depth descriptions of all possible diagnostic quantities that can be archived to netCDF format.
| + | |
| − | | + | |
| − | NOTE: You may use wildcards to request a subset of all possible chemical species. See the next section for more information about wildcards.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt>::</tt>
| + | |
| − | |Signifies the end of the <tt><span style="color:red">SpeciesConc</span></tt> definition section.
| + | |
| − | *"<tt>::</tt>" may be placed at any column in the file.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:blue">ConcAfterChem</span></tt>
| + | |
| − | |Name of the second collection in this <tt>HISTORY.rc</tt> file.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:blue">ConcAfterChem</span>.<span style="color:gray">template</span></tt>
| + | |
| − | |Determines the date and time format for each netCDF file name belonging to the <tt><span style="color:blue">ConcAfterChem</span></tt> collection.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:blue">ConcAfterChem</span>.<span style="color:magenta">frequency</span></tt>
| + | |
| − | |Determines the length of the period in which the diagnostic quantities belonging to <tt><span style="color:blue">ConcAfterChem</span></tt> collection will be temporally-averaged, before being saved to a netCDF file.
| + | |
| − | *This can be can be specified as either "<tt>hhmmss</tt>" or "<tt>YYMMDD hhmmss</tt>".
| + | |
| − | *In the above example, data belonging to the <tt><span style="color:blue">ConcAfterChem</span></tt> collection will be <span style="color:magenta">averaged into monthly mean output</span>.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:blue">ConcAfterChem</span>.format</tt>
| + | |
| − | |For GCHP simulations only: indicates the I/O library that will be used. This can be omitted for GEOS-Chem "Classic" simualations.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:blue">ConcAfterChem</span>.<span style="color:purple">duration</span></tt>
| + | |
| − | |Determines how often a new netCDF file belongng to the <tt><span style="color:blue">ConcAfterChem</span></tt> will be created.
| + | |
| − | *The <tt><span style="color:purple">duration</span></tt> attribute can be specified as either <tt>hhmmss</tt> or <tt>YYMMDD hhmmss</tt>.
| + | |
| − | *In the above example, a new <tt><span style="color:blue">ConcAfterChem</span></tt> netCDF file will be created <span style="color:purple">at the start of each new month</span>.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:blue">ConcAfterChem</span>.<span style="color:darkcyan">mode</span></tt>
| + | |
| − | |Determines the averaging method for the <tt><span style="color:blue">ConcAfterChem</span></tt> collection
| + | |
| − | *In the above example, <tt><span style="color:blue">ConcAfterChem</span></tt> is defined as an <tt><span style="color:darkcyan">time-averaged</span></tt> collection.
| + | |
| − | *Diagnostic quantities belonging to the <tt><span style="color:blue">ConcAfterChem</span></tt> collection will be temporally-averaged for a period whose length is specified by the <tt><span style="color:magenta">frequency</span></tt> attribute before being written to a netCDF file.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><span style="color:blue">ConcAfterChem</span>.<span style="color:green">fields</span></tt>
| + | |
| − | |Lists the diagnostic quantities to be included in the <tt><span style="color:blue">ConcAfterChem</span></tt> collection.
| + | |
| − | *In the above example, we are requesting to archive to the <tt><span style="color:blue">ConcAfterChem</span></tt> collection the <span style="color:green">concentrations of OH, HO2, O1D, and O3P upon exiting the FlexChem/KPP solver</span>
| + | |
| − | *The text <tt>'GIGCchem'</tt> is only needed for GCHP simulations. It is ignored for GEOS-Chem "Classic" simulations. We keep the <tt>'GIGCchem'</tt> in the file in order <tt>HISTORY.rc</tt> files to be interchanged between GEOS-Chem "Classic" and GCHP simulations.
| + | |
| − | | + | |
| − | See the sections below contain in-depth descriptions of all possible diagnostic quantities that can be archived to netCDF format.
| + | |
| − | | + | |
| − | NOTE: You may use wildcards to request a subset of all possible species. See the next section for more information about wildcards.
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt>::</tt>
| + | |
| − | |Signifies the end of the <tt><span style="color:blue">ConcAfterChem</span></tt> definition section.
| + | |
| − | *"<tt>::</tt>" may be placed at any column in the file.
| + | |
| − | | + | |
| − | |}
| + | |
| − | | + | |
| − | For more examples, please see [[Media:Netcdf_Diagnostics.pdf|Bob Yantosca’s netCDF diagnostics overview presentation]]. We will also add more documentation to the GEOS-Chem wiki in the coming weeks.
| + | |
| − | | + | |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 20:14, 8 February 2018 (UTC)
| + | |
| − | | + | |
| − | === Legend ===
| + | |
| − | | + | |
| − | The following terms are used in the tables below.
| + | |
| − | | + | |
| − | {| border=1 cellspacing=0 cellpadding=5
| + | |
| − | |-valign="top" bgcolor="#CCCCCC"
| + | |
| − | !width="175px"|Term
| + | |
| − | !width="600px"|Explanation
| + | |
| − | !width="225px"|Example
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><spcname></tt>
| + | |
| − | |Short name of a GEOS-Chem species, used in several diagnostics listed below.
| + | |
| − | | + | |
| − | NOTES:
| + | |
| − | | + | |
| − | #The single-underscore (<tt>_</tt>) preceding the species name indicates that use of a species wildcard (e.g <tt>SpeciesConc_<span style="color:red">?ADV?</span></tt>, which only selects advected species) is possible.
| + | |
| − | #Allowable wild card values (case-insensitive) for species name are:
| + | |
| − | #*<tt>?ADV?</tt>: Only the advected species
| + | |
| − | #*<tt>?AER?</tt>: Only the aerosol species
| + | |
| − | #*<tt>?ALL?</tt>: All GEOS-Chem species
| + | |
| − | #*<tt>?DRY?</tt>: Only the dry-deposited species
| + | |
| − | #*<tt>?FIX?</tt>: Only the inactive (aka "fixed") species in the KPP chemical mechanism
| + | |
| − | #*<tt>?GAS?</tt>: Only the gas-phase species
| + | |
| − | #*<tt>?KPP?</tt>: Only the KPP species
| + | |
| − | #*<tt>?PHO</tt>: Only the photolyzed species
| + | |
| − | #*<tt>?VAR?</tt>: Only the active (aka "variable") species in the KPP chemical mechanism
| + | |
| − | #*<tt>?WET?</tt>: Only the wet-deposited species
| + | |
| − | #*<tt>?PRODLOSS?</tt>: Only prod/loss diagnostic species
| + | |
| − | #*<tt>?DUSTBIN</tt>: Only the dust bin number
| + | |
| − | #<tt><spcname></tt> should be case-insensitive. In most places where species names are compared, species names are first converted to uppercase and then a string match test is done. But because most species names represent a chemical formula (e.g. NO, CO),they will be mostly all uppercase. Some species names would have mixed-case, e.g. BrCl, Rn, Pb, Be7, etc.
| + | |
| − | |<tt>SpeciesConc_<span style="color:red">NO</span></tt><br><tt>SpeciesConc_<span style="color:red">CO</span></tt><br><tt>SpeciesConc_<span style="color:red">?ADV?</span></tt><br><tt>SpeciesConc_<span style="color:red">?AER?</span></tt><br><tt>SpeciesConc_<span style="color:red">?ALL?</span></tt><br><tt>SpeciesConc_<span style="color:red">?DRY?</span></tt><br><tt>SpeciesConc_<span style="color:red">?FIX?</span></tt><br><tt>SpeciesConc_<span style="color:red">?GAS?</span></tt><br><tt>SpeciesConc_<span style="color:red">?KPP?</span></tt><br><tt>SpeciesConc_<span style="color:red">?PHO?</span></tt><br><tt>SpeciesConc_<span style="color:red">?VAR?</span></tt><br><tt>SpeciesConc_<span style="color:red">?WET?</span></tt><br><tt>...etc...</tt>
| + | |
| − | | + | |
| − | |-valign="top" bgcolor="#CCFFFF"
| + | |
| − | |<tt><metname></tt>
| + | |
| − | |Denotes a met field (or derived quantity such as total optical depth).
| + | |
| − | | + | |
| − | NOTES:
| + | |
| − | #<tt>MET_</tt>, <tt>Met_</tt> or <tt>met_</tt> (case-insensitive) must precede <tt><metname></tt>. This tells the diagnostic code to look for the corresponding field of the <tt>State_Met</tt> object.
| + | |
| − | |<tt>MET_<span style="color:red">U10M</span></tt><br><tt>MET_<span style="color:red">PS</span></tt><br><tt>MET_<span style="color:red">HFLUX</span></tt><br><tt>MET_<span style="color:red">T</span></tt><br><tt>...etc...</tt>
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><photobin></tt>
| + | |
| − | |Number of a given wavelength bin for FAST-JX photolysis
| + | |
| − | |<tt>1-18</tt> (with UCX on);<br><tt>1-12</tt> (with UCX off)
| + | |
| − | | + | |
| − | |-valign="top"
| + | |
| − | |<tt><aername></tt>
| + | |
| − | |Aerosol quanatities included in the following array fields:
| + | |
| − | | + | |
| − | #<tt>State_Chm%AeroArea</tt>
| + | |
| − | #<tt>State_Chm%AeroRadi</tt>
| + | |
| − | #<tt>State_Chm%WetAeroArea</tt>
| + | |
| − | #<tt>State_Chm%WetAeroRadi</tt>
| + | |
| − | | + | |
| − | These do not always conform to GEOS-Chem species (for example, the mineral dust bins are the bins that are used as input for photolysis).
| + | |
| − | | + | |
| − | #<tt>MDUST1</tt>: Mineral dust (0.15μm)
| + | |
| − | #<tt>MDUST2</tt>: Mineral dust (0.25μm)
| + | |
| − | #<tt>MDUST3</tt>: Mineral dust (0.40μm)
| + | |
| − | #<tt>MDUST4</tt>: Mineral dust (0.80μm)
| + | |
| − | #<tt>MDUST5</tt>: Mineral dust (1.50μm)
| + | |
| − | #<tt>MDUST6</tt>: Mineral dust (2.50μm)
| + | |
| − | #<tt>MDUST7</tt>: Mineral dust (4.00μm)
| + | |
| − | #<tt>SULF</tt>: Sulfate
| + | |
| − | #<tt>BC</tt>: Black Carbon
| + | |
| − | #<tt>OC</tt>: Organic Carbon
| + | |
| − | #<tt>SSA</tt>: Sea salt aerosol, accumulation mode
| + | |
| − | #<tt>SSC</tt>: Sea salt aerosol, coarse mode
| + | |
| − | #<tt>BGSULF</tt>: Background stratospheric sulfate
| + | |
| − | #<tt>ICEI</tt>: Irregular ice cloud (Mischenko)
| + | |
| − | |<tt>CHEM_AeroArea<span style="color:red">MDUST1</span></tt><br><tt>CHEM_WetAeroRadi<span style="color:red">SSA</span></tt><br><tt>...etc...</tt>
| + | |
| − | | + | |
| − | |-valign="top" bgcolor="#CCFFFF"
| + | |
| − | |<tt>nAdvect</tt>
| + | |
| − | |Number of advected GEOS-Chem species
| + | |
| | | | | | |
| | | | |
| − | |-valign="top" | + | |-valign="top" halign="center" |
| − | |<tt>nDryDep</tt> | + | |[[GEOS-Chem 13.3.0]] |
| − | |Number of dry-depositing GEOS-Chem species
| + | | |
| | + | | |
| | | | | | |
| | | | |
| − | |-valign="top" bgcolor="#CCFFFF" | + | |-valign="top" halign="center" |
| − | |<tt>nKppSpc</tt> | + | |[[GEOS-Chem 13.2.0]] |
| − | |Number of species in the KPP chemistry mechanism | + | | |
| | + | | |
| | | | | | |
| | | | |
| − | |-valign="top" | + | |-valign="top" halign="center" |
| − | |<tt>nPhoto</tt> | + | |[[GEOS-Chem 13.1.0]] |
| − | |Number of photolyzing GEOS-Chem species
| + | | |
| | + | | |
| | | | | | |
| − |
| |
| − | |-valign="top" bgcolor="#CCFFFF"
| |
| − | |<tt>nTomas</tt>
| |
| − | |Number of size-resolved TOMAS species
| |
| − | |<tt>IBINS*(ICOMP-IDIAG+1)</tt>
| |
| | | | |
| | |-valign="top" | | |-valign="top" |
| − | |<tt>nWetDep</tt> | + | |[[GEOS-Chem 13.0.0]] |
| − | |Number of soluble, wet-depositing GEOS-Chem species | + | |[https://github.com/geoschem/input-data-catalogs/blob/7a53a0c19b5972611486a91a4c45433da97ba7c9/ChemistryInputs.csv <tt>ChemistryInputs.csv</tt>] |
| − | | | + | |[https://github.com/geoschem/input-data-catalogs/blob/7a53a0c19b5972611486a91a4c45433da97ba7c9/EmissionsInputs.csv <tt>EmissionInputs.csv</tt>] |
| | + | |[https://github.com/geoschem/input-data-catalogs/blob/7a53a0c19b5972611486a91a4c45433da97ba7c9/InitialConditions.csv <tt>InitialConditions.csv</tt>] |
| | | | |
| | |} | | |} |
| − |
| |
| − | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 20:32, 14 November 2017 (UTC)
| |
| − |
| |
| − | == Collection list ==
| |
| − |
| |
| − |
| |
| − | EXPID: OutputDir/GCHP
| |
| − | EXPDSC: GEOS-Chem_devel
| |
| − | CoresPerNode: 6
| |
| − |
| |
| − | #===================================================================
| |
| − | # Declare collection names and toggle on/off
| |
| − | # by commenting out with a #
| |
| − | #===================================================================
| |
| − | COLLECTIONS: 'SpeciesConc',
| |
| − | 'Aerosols',
| |
| − | 'CloudConvFlux',
| |
| − | 'ConcAfterChem',
| |
| − | 'DryDep',
| |
| − | 'JValues',
| |
| − | 'JValuesLocalNoon',
| |
| − | 'LevelEdgeDiags',
| |
| − | 'ProdLoss',
| |
| − | 'StateChm',
| |
| − | 'StateMet',
| |
| − | 'WetLossConv',
| |
| − | 'WetLossLS',
| |
| − |
| |
| − | == Species concentrations ==
| |
| − |
| |
| − | # Species concentrations (per advected species)
| |
| − | SpeciesConc.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | SpeciesConc.format: 'CFIO',
| |
| − | SpeciesConc.frequency: 010000
| |
| − | SpeciesConc.duration: 010000
| |
| − | SpeciesConc.mode: 'time-averaged'
| |
| − | SpeciesConc.fields: 'SpeciesConc_?ADV? ', 'GIGCchem',
| |
| − |
| |
| − | == Aerosol diagnostics ==
| |
| − |
| |
| − | #===================================================================
| |
| − | # Aerosol optical depth, surface area, number density, and hygroscopic growth
| |
| − | Aerosols.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | Aerosols.format: 'CFIO',
| |
| − | Aerosols.frequency: 010000
| |
| − | Aerosols.duration: 010000
| |
| − | Aerosols.mode: 'time-averaged'
| |
| − | Aerosols.fields: 'AODDust ', 'GIGCchem',
| |
| − | 'AODDustWL1_?DUSTBIN? ', 'GIGCchem',
| |
| − | 'AODHygWL1_?HYG? ', 'GIGCchem',
| |
| − | 'AODSOAfromAqIsopreneWL1 ', 'GIGCchem',
| |
| − | 'AODStratLiquidAerWL1 ', 'GIGCchem',
| |
| − | 'AODPolarStratCloudWL1 ', 'GIGCchem',
| |
| − | 'AerHygroscopicGrowth_?HYG? ', 'GIGCchem',
| |
| − | 'AerNumDensityStratLiquid ', 'GIGCchem',
| |
| − | 'AerNumDensityStratParticulate ', 'GIGCchem',
| |
| − | 'AerAqueousVolume ', 'GIGCchem',
| |
| − | 'AerSurfAreaDust ', 'GIGCchem',
| |
| − | 'AerSurfAreaHyg_?HYG? ', 'GIGCchem',
| |
| − | 'AerSurfAreaStratLiquid ', 'GIGCchem',
| |
| − | 'AerSurfAreaPolarStratCloud ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaMDUST1 ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaMDUST2 ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaMDUST3' ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaMDUST4 ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaMDUST5 ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaMDUST6 ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaMDUST7 ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaSULF ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaBC ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaOC ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaSSA ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaSSC ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaBGSULF ', 'GIGCchem',
| |
| − | 'Chem_AeroAreaICEI ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiMDUST1 ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiMDUST2 ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiMDUST3 ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiMDUST4 ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiMDUST5 ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiMDUST6 ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiMDUST7 ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiSULF ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiBC ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiOC ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiSSA ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiSSC ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiBGSULF ', 'GIGCchem',
| |
| − | 'Chem_AeroRadiICEI ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaMDUST1 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaMDUST2 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaMDUST3 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaMDUST4 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaMDUST5 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaMDUST6 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaMDUST7 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaSULF ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaBC ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaOC ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaSSA ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaSSC ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaBGSULF ', 'GIGCchem',
| |
| − | 'Chem_WetAeroAreaICEI ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiMDUST1 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiMDUST2 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiMDUST3 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiMDUST4 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiMDUST5 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiMDUST6 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiMDUST7 ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiSULF ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiBC ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiOC ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiSSA ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiSSC ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiBGSULF ', 'GIGCchem',
| |
| − | 'Chem_WetAeroRadiICEI ', 'GIGCchem',
| |
| − | 'Chem_StatePSC ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAN2O5H2O ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAN2O5HCl ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAClNO3H2O ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAClNO3HCl ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAClNO3HBr ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLABrNO3H2O ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLABrNO3HCl ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAHOClHCl ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAHOClHBr ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAHOBrHCl ', 'GIGCchem',
| |
| − | 'Chem_KhetiSLAHOBrHBr ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Cloud convective flux ==
| |
| − |
| |
| − | # Cloud convective flux (per advected species)
| |
| − | CloudConvFlux.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | CloudConvFlux.format: 'CFIO',
| |
| − | CloudConvFlux.frequency: 010000
| |
| − | CloudConvFlux.duration: 010000
| |
| − | CloudConvFlux.mode: 'time-averaged'
| |
| − | CloudConvFlux.fields: 'CloudConvFlux_?ADV? ', 'GIGCchem',
| |
| − |
| |
| − | == Concentrations after chemistry ==
| |
| − |
| |
| − | # Concentrations after chemistry
| |
| − | ConcAfterChem.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | ConcAfterChem.format: 'CFIO',
| |
| − | ConcAfterChem.frequency: 010000
| |
| − | ConcAfterChem.duration: 010000
| |
| − | ConcAfterChem.mode: 'time-averaged'
| |
| − | ConcAfterChem.fields: 'OHconcAfterChem ', 'GIGCchem',
| |
| − | 'HO2concAfterChem ', 'GIGCchem',
| |
| − | 'O1DconcAfterChem ', 'GIGCchem',
| |
| − | 'O3PconcAfterChem ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Dry deposition diagnostics ==
| |
| − |
| |
| − | # Dry deposition flux velocity (per dry deposited species)
| |
| − | DryDep.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | DryDep.format: 'CFIO',
| |
| − | DryDep.frequency: 010000
| |
| − | DryDep.duration: 010000
| |
| − | DryDep.mode: 'time-averaged'
| |
| − | DryDep.fields: 'DryDepVel_?DRY? ', 'GIGCchem',
| |
| − | 'DryDepMix_?DRY? ', 'GIGCchem',
| |
| − | 'DryDepChm_?DRY? ', 'GIGCchem',
| |
| − | 'DryDep_?DRY? ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Photolysis diagnostics ==
| |
| − |
| |
| − | # Photolysis rates (J-values)
| |
| − | JValues.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | JValues.format: 'CFIO',
| |
| − | JValues.frequency: 010000
| |
| − | JValues.duration: 010000
| |
| − | JValues.mode: 'time-averaged'
| |
| − | JValues.fields: 'Jval_?PHO? ', 'GIGCchem',
| |
| − | ::
| |
| − | # Photolysis rates at local noon (J-values)
| |
| − | JValuesLocalNoon.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | JValuesLocalNoon.format: 'CFIO',
| |
| − | JValuesLocalNoon.frequency: 010000
| |
| − | JValuesLocalNoon.duration: 010000
| |
| − | JValuesLocalNoon.mode: 'instantaneous'
| |
| − | JValuesLocalNoon.fields: 'JNoon_?PHO? ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Diagnostics on level edges ==
| |
| − |
| |
| − | # Level edge diagnostics (73-level only)
| |
| − | LevelEdgeDiags.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | LevelEdgeDiags.format: 'CFIO',
| |
| − | LevelEdgeDiags.frequency: 010000
| |
| − | LevelEdgeDiags.duration: 010000
| |
| − | LevelEdgeDiags.mode: 'time-averaged'
| |
| − | LevelEdgeDiags.fields: 'Met_CMFMC ', 'GIGCchem',
| |
| − | 'Met_PEDGE ', 'GIGCchem',
| |
| − | 'Met_PEDGEDRY ', 'GIGCchem',
| |
| − | 'Met_PFICU ', 'GIGCchem',
| |
| − | 'Met_PFILSAN ', 'GIGCchem',
| |
| − | 'Met_PFLCU ', 'GIGCchem',
| |
| − | 'Met_PFLLSAN ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Production and loss rates ==
| |
| − |
| |
| − | # Prod/loss rates
| |
| − | ProdLoss.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | ProdLoss.format: 'CFIO',
| |
| − | ProdLoss.frequency: 010000
| |
| − | ProdLoss.duration: 010000
| |
| − | ProdLoss.mode: 'time-averaged'
| |
| − | ProdLoss.fields: 'PROD_?PRD? ', 'GIGCchem',
| |
| − | 'ProdBCPIfromBCPO ', 'GIGCchem',
| |
| − | 'ProdOCPIfromOCPO ', 'GIGCchem',
| |
| − | 'ProdSO4fromH2O2inCloud ', 'GIGCchem',
| |
| − | 'ProdSO4fromO3inCloud ', 'GIGCchem',
| |
| − | 'ProdSO4fromO3inSeaSalt ', 'GIGCchem',
| |
| − | 'ProdSO4fromHOBrInCloud ', 'GIGCchem',
| |
| − | 'ProdSO4fromSRO3 ', 'GIGCchem',
| |
| − | 'ProdSO4fromSRHObr ', 'GIGCchem',
| |
| − | 'ProdSO4fromO3s ', 'GIGCchem',
| |
| − | 'LOSS_?LOS? ', 'GIGCchem',
| |
| − | 'LossHNO3onSeaSalt ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Fields of the State_Chm object ==
| |
| − |
| |
| − | # State_Chm array diagnostics (see also Aerosols collection
| |
| − | StateChm.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | StateChm.format: 'CFIO',
| |
| − | StateChm.frequency: 010000
| |
| − | StateChm.duration: 010000
| |
| − | StateChm.mode: 'time-averaged'
| |
| − | StateChm.fields: 'Chem_phSav ', 'GIGCchem',
| |
| − | 'Chem_HplusSav ', 'GIGCchem',
| |
| − | 'Chem_WaterSav ', 'GIGCchem',
| |
| − | 'Chem_SulRatSav ', 'GIGCchem',
| |
| − | 'Chem_NaRatSav ', 'GIGCchem',
| |
| − | 'Chem_AcidPurSav ', 'GIGCchem',
| |
| − | 'Chem_BiSulSav ', 'GIGCchem',
| |
| − | 'Chem_pHCloud ', 'GIGCchem',
| |
| − | 'Chem_SSAlk', ', 'GIGCchem',
| |
| − | 'Chem_HSO3AQ ', 'GIGCchem',
| |
| − | 'Chem_SO3AQ ', 'GIGCchem',
| |
| − | 'Chem_fupdateHOBr ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Fields of the State_Met object ==
| |
| − |
| |
| − | # State_Met array diagnostics
| |
| − | StateMet.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | StateMet.format: 'CFIO',
| |
| − | StateMet.frequency: 010000
| |
| − | StateMet.duration: 010000
| |
| − | StateMet.mode: 'time-averaged'
| |
| − | StateMet.fields: 'Met_AD ', 'GIGCchem',
| |
| − | 'Met_AIRDEN ', 'GIGCchem',
| |
| − | 'Met_AIRVOL ', 'GIGCchem',
| |
| − | 'Met_ALBD ', 'GIGCchem',
| |
| − | 'Met_AREAM2 ', 'GIGCchem',
| |
| − | 'Met_AVGW ', 'GIGCchem',
| |
| − | 'Met_BXHEIGHT ', 'GIGCchem',
| |
| − | 'Met_ChemGridLev ', 'GIGCchem',
| |
| − | 'Met_CLDF ', 'GIGCchem',
| |
| − | 'Met_CLDFRC ', 'GIGCchem',
| |
| − | 'Met_CLDTOPS ', 'GIGCchem',
| |
| − | 'Met_DELP ', 'GIGCchem',
| |
| − | 'Met_DQRCU ', 'GIGCchem',
| |
| − | 'Met_DQRLSAN ', 'GIGCchem',
| |
| − | 'Met_DTRAIN ', 'GIGCchem',
| |
| − | 'Met_EFLUX ', 'GIGCchem',
| |
| − | 'Met_FRCLND ', 'GIGCchem',
| |
| − | 'Met_FRLAKE ', 'GIGCchem',
| |
| − | 'Met_FRLAND ', 'GIGCchem',
| |
| − | 'Met_FRLANDIC ', 'GIGCchem',
| |
| − | 'Met_FROCEAN ', 'GIGCchem',
| |
| − | 'Met_FRSEAICE ', 'GIGCchem',
| |
| − | 'Met_FRSNO ', 'GIGCchem',
| |
| − | 'Met_GWETROOT ', 'GIGCchem',
| |
| − | 'Met_GWETTOP ', 'GIGCchem',
| |
| − | 'Met_HFLUX ', 'GIGCchem',
| |
| − | 'Met_LAI ', 'GIGCchem',
| |
| − | 'Met_LWI ', 'GIGCchem',
| |
| − | 'Met_PARDR ', 'GIGCchem',
| |
| − | 'Met_PARDF ', 'GIGCchem',
| |
| − | 'Met_PBLTOPL ', 'GIGCchem',
| |
| − | 'Met_PBLH ', 'GIGCchem',
| |
| − | 'Met_PHIS ', 'GIGCchem',
| |
| − | 'Met_PMID ', 'GIGCchem',
| |
| − | 'Met_PMIDDRY ', 'GIGCchem',
| |
| − | 'Met_PRECANV ', 'GIGCchem',
| |
| − | 'Met_PRECCON ', 'GIGCchem',
| |
| − | 'Met_PRECLSC ', 'GIGCchem',
| |
| − | 'Met_PRECTOT ', 'GIGCchem',
| |
| − | 'Met_PS1DRY ', 'GIGCchem',
| |
| − | 'Met_PS1WET ', 'GIGCchem',
| |
| − | 'Met_PS2DRY ', 'GIGCchem',
| |
| − | 'Met_PS2WET ', 'GIGCchem',
| |
| − | 'Met_PSC2WET ', 'GIGCchem',
| |
| − | 'Met_PSC2DRY ', 'GIGCchem',
| |
| − | 'Met_QI ', 'GIGCchem',
| |
| − | 'Met_QL ', 'GIGCchem',
| |
| − | 'Met_OMEGA ', 'GIGCchem',
| |
| − | 'Met_OPTD ', 'GIGCchem',
| |
| − | 'Met_REEVAPCN ', 'GIGCchem',
| |
| − | 'Met_REEVAPLS ', 'GIGCchem',
| |
| − | 'Met_SLP ', 'GIGCchem',
| |
| − | 'Met_SNODP ', 'GIGCchem',
| |
| − | 'Met_SNOMAS ', 'GIGCchem',
| |
| − | 'Met_SPHU ', 'GIGCchem',
| |
| − | 'Met_SPHU1 ', 'GIGCchem',
| |
| − | 'Met_SPHU2 ', 'GIGCchem',
| |
| − | 'Met_SUNCOS ', 'GIGCchem',
| |
| − | 'Met_SUNCOSmid ', 'GIGCchem',
| |
| − | 'Met_SWGDN ', 'GIGCchem',
| |
| − | 'Met_T ', 'GIGCchem',
| |
| − | 'Met_TAUCLI ', 'GIGCchem',
| |
| − | 'Met_TAUCLW ', 'GIGCchem',
| |
| − | 'Met_THETA ', 'GIGCchem',
| |
| − | 'Met_TMPU1 ', 'GIGCchem',
| |
| − | 'Met_TMPU2 ', 'GIGCchem',
| |
| − | 'Met_TO3 ', 'GIGCchem',
| |
| − | 'Met_TropHt ', 'GIGCchem',
| |
| − | 'Met_TropLev ', 'GIGCchem',
| |
| − | 'Met_TropP ', 'GIGCchem',
| |
| − | 'Met_TS ', 'GIGCchem',
| |
| − | 'Met_TSKIN ', 'GIGCchem',
| |
| − | 'Met_TV ', 'GIGCchem',
| |
| − | 'Met_U ', 'GIGCchem',
| |
| − | 'Met_U10M ', 'GIGCchem',
| |
| − | 'Met_USTAR ', 'GIGCchem',
| |
| − | 'Met_UVALBEDO ', 'GIGCchem',
| |
| − | 'Met_V ', 'GIGCchem',
| |
| − | 'Met_V10M ', 'GIGCchem',
| |
| − | 'Met_Z0 ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Loss of soluble species in cloud updrafts ==
| |
| − |
| |
| − | # Loss due to convection (per wet deposited species)
| |
| − | WetLossConv.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | WetLossConv.format: 'CFIO',
| |
| − | WetLossConv.frequency: 010000
| |
| − | WetLossConv.duration: 010000
| |
| − | WetLossConv.mode: 'time-averaged'
| |
| − | WetLossConv.fields: 'WetLossConv_?WET? ', 'GIGCchem',
| |
| − | ::
| |
| − |
| |
| − | == Loss of soluble species in large-scale wet deposition ==
| |
| − |
| |
| − | # Loss due to rainout and washout (per deposited species)
| |
| − | WetLossLS.template: '%y4%m2%d2_%h2%n2z.nc4',
| |
| − | WetLossLS.format: 'CFIO',
| |
| − | WetLossLS.frequency: 010000
| |
| − | WetLossLS.duration: 010000
| |
| − | WetLossLS.mode: 'time-averaged'
| |
| − | WetLossLS.fields: 'WetLossLS_?WET? ', 'GIGCchem',
| |
| − | ::
| |
At present, the HEMCO data directory tree resides on the Compute Canada and AWS s3://gcgrid bucket. We have created a package that will let you download this directory tree to your local disk storage space. For more information, please see the Downloading the HEMCO data directories section below.
