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|<p><font color="#FFFFFF" size="+3">'''GEOS&#150;Chem Wiki'''</font></p>
 
|<p><font color="#FFFFFF" size="+3">'''GEOS&#150;Chem Wiki'''</font></p>
  
 
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----
  
 
<p align="center"><big>'''GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment<br>through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.'''</big></p>
 
<p align="center"><big>'''GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment<br>through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.'''</big></p>
  
The [http://acmg.seas.harvard.edu/geos/ GEOS–Chem model] is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the [http://gmao.gsfc.nasa.gov/ NASA Global Modeling and Assimilation Office]. It is applied by [http://acmg.seas.harvard.edu/geos/geos_people.html research groups around the world] to a wide range of atmospheric composition problems, Central management and support of the model is provided by the [http://acmg.seas.harvard.edu/index.html Atmospheric Chemistry Modeling Group at Harvard University.]
+
The [http://acmg.seas.harvard.edu/geos/ GEOS–Chem model] is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the [http://gmao.gsfc.nasa.gov/ NASA Global Modeling and Assimilation Office]. It is applied by [http://acmg.seas.harvard.edu/geos/geos_people.html research groups around the world] to a wide range of atmospheric composition problems. Central management and support of the model is provided by the [http://acmg.seas.harvard.edu/index.html Atmospheric Chemistry Modeling Group at Harvard University] and by the [https://sites.wustl.edu/acag/ Atmospheric Composition Analysis Group at Washington University].
 
+
This wiki is meant to facilitate communication between GEOS-Chem users and developers. If this is '''your first time here''', check out [[Features of the GEOS-Chem public wiki|the features page]]. If you would like to contribute to the wiki, please register as a user by clicking ''create account'' at the top right corner of this page.
+
 
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New information is continually being added to the wiki, so please check back here often, or even better, [[Features_of_the_GEOS-Chem_public_wiki#Let_the_GEOS-Chem_wiki_inform_you_of_recent_changes.21|subscribe to the recent changes' RSS feed]]: you will not miss a discussion!
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|
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----
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----
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<big><strong>GEOS-Chem v11-02-final</strong> '''will also carry the designation''' <strong>GEOS-Chem 12.0.0</strong>'''.'''  We are migrating to a purely numeric versioning system in order to adhere more closely to software development best practices. For a complete description of the new versioning system, please see [[GEOS-Chem version numbering system|our ''GEOS-Chem version numbering system'' wiki page]].</big>
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----
+
----
+
  
 +
|-valign="top"
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|colspan="3" align="center" bgcolor="#CCCCCC"|'''<font size="+2">[[GEOS-Chem overview]]</font>'''
 +
|-valign="top"
 +
|width="225px" align="center"|<font size="+2">[[GEOS-Chem versions|Past releases]]</font>
 +
|width="450px" align="center" bgcolor="#CCFFFF"|<font size="+2">[[GEOS-Chem 13.4.0|'''Current release: GEOS-Chem 13.4.0''']]</font>
 +
|width="225px" align="center"|<font size="+2">[[GEOS-Chem model development_priorities|Future releases]]</font>
  
 
|}
 
|}
  
{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
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== News ==
|-valign="top" align="center"
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*'''02 May 2022:''' [[GEOS-Chem 13.4.0]] is now available!
|width="334px"|'''Getting started w/ GEOS-Chem:'''
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*'''24 Feb 2022:''' Read the [[Media:GEOS-Chem_Newsletter_2022_Issue_1.pdf|GEOS-Chem Newsletter 2022, Issue #1]]
|width="333px"|'''[[GEOS-Chem welcome letter for new users|Welcome letter for new users]]'''
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*'''11 Dec 2020:''' A [https://scholar.google.com/citations?user=ho-sNj4AAAAJ GEOS-Chem Google Scholar page] is now available!
|width="333px"|'''[[GEOS-Chem basics]]'''
+
**Click 'Follow' to be notified of new publications.
 +
**Contact [mailto:gxl642@student.bham.ac.uk Gongda Lu] with issues or questions.
 +
*'''02 Apr 2020:''' The GEOS-Chem Youtube Channel has 100+ subscribers and a new URL: <tt>'''https://youtube.com/c/geoschem'''</tt>
 +
*'''03 Feb 2020:''' View our GEOS-Chem "dry-run" tutorial at our [http://youtube.geos-chem.org GEOS-Chem Youtube channel]
 +
*'''17 Sep 2019:''' NASA/GMAO is now producing [https://gmao.gsfc.nasa.gov/weather_prediction/GEOS-CF/ GEOS chemical forecasts (GEOS-CF)] using GEOS-Chem coupled to the NASA/GEOS ESM
  
|-valign="top" bgcolor="#CCFFFF" align="center"
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For access to all past GEOS-Chem newsletters, visit [[GEOS-Chem newsletters|this page]].
|'''Current release candidate:'''
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|'''[[GEOS-Chem v11-02#v11-02 release candidate|v11-02-release-candidate]]'''
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|'''[[GEOS-Chem v11-02 benchmark history|v11-02 benchmark history]]'''
+
  
|-valign="top" align="center"
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== Documentation ==
|'''Pending major release:'''
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|'''[[GEOS-Chem 12#12.0.0|GEOS-Chem 12.0.0]]'''<br>aka '''v11-02-final''' in the<br>[[GEOS-Chem version numbering system|old version number system]]
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|'''[[GEOS-Chem 12 benchmark history|GEOS-Chem 12 benchmark history]]'''
+
  
|-valign="top" align="center"
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=== GEOS-Chem manuals and tutorials ===
|'''Version for HPC environments:'''
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|'''[[GEOS-Chem HP]]'''
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|'''[[GEOS-Chem HP Status]]'''
+
  
|-valign="top" align="center"
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The table below lists the various manual pages for GEOS-Chem and its related software packages.  
|'''List of publications:'''
+
|'''[http://acmg.seas.harvard.edu/geos/geos_pub.html Refer to this page]'''
+
|
+
  
|-valign="top" align="center"
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{| border=1 cellpadding=5 cellspacing=0
|'''GEOS-Chem public license:'''
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|'''[[Media:LICENSE.txt|License agreement document]]'''
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|'''[[Media:AUTHORS.txt|List of developers]]'''
+
  
|}
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|-valign="top"
 +
!width="200px" bgcolor="#CCCCCC"|Item
 +
!width="360px" bgcolor="#CCCCCC"|Link
 +
!width="375px" bgcolor="#CCCCCC"|Description
  
<br>
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|-valign="top"
 +
|'''GEOS-Chem Classic'''
 +
|[[Getting Started with GEOS-Chem]] (wiki page)
 +
*NOTE: Will be ported to geos-chem.readthedocs.io soon
 +
|GEOS-Chem single-node implementation<br>(using 1-64 computational cores)
  
{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
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|-valign="top"
 +
|'''GCHP'''
 +
|[https://gchp.readthedocs.io gchp.readthedocs.io]
 +
|GEOS-Chem multi-node "high performance" implementation<br>(using 100's - 1000's of computational cores)
  
|-height="50" bgcolor="#00AAAA" align="center"
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|-valign="top"
|colspan="2"|<p><font color="#FFFFFF" size="+2">'''General information about GEOS-Chem'''</font></p>
+
|'''GEOS-Chem on the cloud'''
 +
|[http://cloud.geos-chem.org cloud.geos-chem.org]
 +
|Instructions for running GEOS-Chem on the Amazon Web Services EC2 cloud-computing platform
  
|-valign="top" bgcolor="#CCCCCC"
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|-valign="top"
!width="1000px" colspan="2"|<big>Introduction to GEOS-Chem and the International GEOS-Chem User Community</big>
+
|'''WRF-GC'''
 +
|[http://wrf.geos-chem.org wrf.geos-chem.org]
 +
[https://wrfgc.readthedocs.io wrfgc.readthedocs.io]
 +
|GEOS-Chem coupled to the WRF weather model
  
 
|-valign="top"
 
|-valign="top"
|width="500px"| <!-- Intro and overview -->
+
|'''HEMCO'''
*[http://acmg.seas.harvard.edu/geos/geos_overview.html Overview of GEOS-Chem and its user community]
+
|[https://hemco.readthedocs.io hemco.readthedocs.io]
**[http://acmg.seas.harvard.edu/geos/geos_people.html GEOS-Chem People & Projects]
+
|The Harmonized Emissions Component
** [[GEOS-Chem Support Team]]
+
** [[GEOS-Chem newsletters]]
+
** [http://acmg.seas.harvard.edu/geos/geos_new_developments.html Recommendations for offering co-authorships to GEOS-Chem developers]
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** [[GEOS-Chem_versions_under_development|GEOS-Chem code development history]]
+
** [http://acmg.seas.harvard.edu/geos/geos_chem_narrative.html Narrative description of GEOS-Chem]
+
* [[GEOS-Chem basics|Basic information about getting set up with GEOS-Chem]]
+
** [[GEOS-Chem welcome letter for new users]]
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** [[Features of the GEOS-Chem public wiki]]
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** [[Customizing your GEOS-Chem Wiki Settings]]
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** [http://acmg.seas.harvard.edu/geos/geos_search.html GEOS-Chem Search Engines]
+
|width="500px"| <!-- Steering committee etc -->
+
* [http://acmg.seas.harvard.edu/geos/geos_steering_cmte.html GEOS-Chem Steering Committee]
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** [[GEOS-Chem model development priorities]]
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* [http://acmg.seas.harvard.edu/geos/geos_working_groups.html GEOS-Chem Working Groups]
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** [[GEOS-Chem Adjoint|Adjoint Model and Data Assimilation Working Group]]
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** [[Aerosols Working Group]]
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** [[Carbon Cycle Working Group]]
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** [[Chemistry-Ecosystems-Climate Working Group]]
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** [[GEOS-Chem High Performance Working Group]]
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** [[Hg and POPs Working Group]]
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** [[Chemistry Issues|Chemistry Working Group]]
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** [[Emissions and Deposition Working Group]]
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** [[Transport Working Group]]
+
** [[GEOS-Chem Nested Model]]
+
  
|-valign="top" bgcolor="#CCCCCC"
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|-valign="top"
!width="1000px" colspan="2"|<big>Getting started with GEOS-Chem</big>
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|'''GCPy'''
 +
|[https://gcpy.readthedocs.io gcpy.readthedocs.io]
 +
|The GEOS-Chem Python Toolkit
  
 
|-valign="top"
 
|-valign="top"
|
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|'''KPP-for-GEOS-Chem'''
* [[GEOS-Chem basics]] (e.g. tutorials, user guides, etc.)
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|[https://kpp.readthedocs.io kpp.readthedocs.io]
* [[Frequently asked questions about GEOS-Chem]]
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|The Kinetic PreProcessor (KPP), customized for GEOS-Chem
* [[Minimum system requirements for GEOS-Chem]]
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* [[Downloading GEOS-Chem source code and data]]
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* [[GEOS-Chem performance]]
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* [[Creating GEOS-Chem run directories]]
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* [[GEOS-Chem coding style guide]]
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* GEOS-Chem [[GEOS-Chem horizontal grids|horizontal grids]] and [[GEOS-Chem vertical grids|vertical grids]]
+
|
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* [[Initial conditions for GEOS-Chem]]
+
* [[Speeding up GEOS-Chem]]
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* [[GEOS-Chem coding and debugging#GEOS-Chem debugging tips|Tips on how to debug GEOS-Chem effectively]]
+
* [[Parallelizing GEOS-Chem]] with the OpenMP directives
+
* [[Common GEOS-Chem error messages]]
+
* [[Adding tracers to GEOS-Chem|Adding tracers to GEOS-Chem (v10-01 and prior)]]
+
* [[GEOS-Chem_species_database#Adding_new_species_to_the_GEOS-Chem_species_database|Adding species to GEOS-Chem (v11-01 and later)]]
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* [[Adding passive species to GEOS-Chem]]
+
|}
+
  
<br>
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|-valign="top"
 +
|'''GEOS-Chem Adjoint'''
 +
|[[GEOS-Chem Adjoint]] (wiki page)
 +
|The GEOS-Chem adjoint model<br> (NOTE: maintained separately from GEOS-Chem)
  
{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
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|-valign="top"
 +
|'''GEOS-Chem Videos'''
 +
|[https://youtube.com/c/geos-chem youtube.com/c/geos-chem]
 +
|Tutorial videos for GEOS-Chem, GCHP, HEMCO, GCPy, etc., and recordings of GEOS-Chem meeting sessions
  
|-height="50" bgcolor="#00AAAA" align="center"
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|-valign="top"
|colspan="2"|<p><font color="#FFFFFF" size="+2">'''GEOS-Chem Code Developers' Forums'''</font></p>
+
|'''GEOS-Chem Guides'''
 +
|[[GEOS-Chem overview#GEOS-Chem Guides|GEOS-Chem Guides]] (wiki page)
 +
|Short manuals giving a deeper dive into various GEOS-Chem topics (such as compilers, netCDF, diagnostics, etc.)
  
|-valign="top" bgcolor="#CCCCCC"
+
|}
!width="500px"|<big>Coding</big>
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!width="500px"|<big>Meteorological Fields</big>
+
  
|-valign="top"
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=== General information about GEOS-Chem ===
| <!-- Coding -->
+
*Software development
+
**[[GEOS-Chem versions under development]]
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**[[Version control with Git]]
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*[[GEOS-Chem coding and debugging]]
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**[[GEOS-Chem coding style guide]]
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**[[Bugs and fixes|List of GEOS-Chem bugs and in which version they were resolved]]
+
**[[Currently unresolved issues in GEOS-Chem]]
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**[[Known issues caused by compiler bugs|Known GEOS-Chem issues caused by compiler bugs]]
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**[[Machine issues & portability|Machine issues and portability]]
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**[[Debugging with the GEOS-Chem unit tester]]
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**[[Performing Difference Tests with GEOS-Chem]]
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**[[Common GEOS-Chem error messages]]
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**[[GEOS-Chem_coding_and_debugging#Reporting_GEOS-Chem_bugs_to_the_GEOS-Chem_Support_Team|Reporting GEOS-Chem bugs to the GCST]]
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*[[GEOS-Chem performance]]
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**[[Profiling GEOS-Chem]]
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**[[Passing array arguments efficiently in GEOS-Chem]]
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**[[Floating point math issues]]
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**[[GEOS-Chem performance#7-day time tests|Results from 7-day timing tests]]
+
| <!-- Met fields -->'''Current met field products'''
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*[[Overview of GMAO met data products]]
+
**[[Version history of GMAO met data products]]
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**[[Available met data for nested grid simulations]]
+
**[[List of reprocessed met fields]]
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*[[MERRA-2|GMAO MERRA-2]]
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**[[List of MERRA-2 met fields|List of MERRA-2 met fields used by GEOS-Chem]]
+
**[[MERRA-2 implementation details|Implementing MERRA-2 into GEOS-Chem]]
+
*[[GEOS-FP|GMAO GEOS-FP]]
+
**[[List of GEOS-FP met fields|List of GEOS-FP met fields used by GEOS-Chem]]
+
**[[GEOS-FP implementation details|Implementing GEOS-FP into GEOS-Chem]]
+
  
'''Obsolete met field products'''
+
The table below lists where you can find general information about GEOS-Chem.
*[[MERRA|GMAO MERRA "reanalysis"]]
+
**[[List of MERRA met fields|List of MERRA met fields used by GEOS-Chem]]
+
**[[MERRA implementation details|Implementing MERRA into GEOS-Chem]]
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*[[GEOS-5|GMAO GEOS-5.2.0]]
+
**[[List of GEOS-5 met fields|List of GEOS-5.2.0 met fields used by GEOS-Chem]]
+
**[[GEOS-5 issues|Issues with GEOS-5.2.0 met data]]
+
  
|-valign="top" bgcolor="#CCCCCC"
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{| border=1 cellpadding=5 cellspacing=0
!width="500px"|<big>Emissions</big>
+
!width="500px"|<big>Chemistry</big>
+
  
 
|-valign="top"
 
|-valign="top"
|<!-- Emissions -->
+
!width="200px" bgcolor="#CCCCCC"|Item
*[[HEMCO|HEMCO emissions component]]
+
!width="360px" bgcolor="#CCCCCC"|Link
**[[HEMCO data directories]]
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!width="365px" bgcolor="#CCCCCC"|Description
**[[The HEMCO User's Guide]]
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**[[Implementation of HEMCO in GEOS-Chem]]
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*Emissions categories
+
**[[Aerosol emissions]]
+
**[[Aircraft emissions]]
+
**[[Anthropogenic emissions]]
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**[[Scale factors for anthropogenic emissions]]
+
**[[Biofuel emissions]]
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**[[Biogenic emissions]]
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**[[Biomass burning emissions]]
+
**[[Lightning NOx emissions]]
+
**[[Ship emissions]]
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**[[Soil NOx emissions]]
+
**[[Volcanic SO2 emissions from Aerocom|Volcanic emissions]]
+
**[[Historical and Future Emissions|Historical and future emissions]]
+
|<!-- Chemistry -->
+
*[[GEOS-Chem chemistry mechanisms]]
+
**[[GEOS-Chem chemistry mechanisms#Stratospheric chemistry|Stratopsheric chemistry options]]
+
**[[GEOS-Chem chemistry mechanisms#Specialty simulations|Specialty simulations (aka "offline simulations")]]
+
**[[Photolysis mechanism|Photolysis mechanisms used in GEOS-Chem]]
+
*[[Species in GEOS-Chem]]
+
**[[GEOS-Chem species database]]
+
**[[Physical properties of GEOS-Chem species]]
+
**[[GEOS-Chem species units]]
+
**[[Species indexing in GEOS-Chem]]
+
*Other resources
+
**[[FlexChem]]
+
**[[Chemistry Issues]]
+
**[[Process Analysis Diagnostics]]
+
**[[Linking GEOS-Chem to CMAQ]]
+
**[[Coupling GEOS-Chem with RRTMG]]
+
**[[DSMACC chemical box model]]
+
  
|-valign="top" bgcolor="#CCCCCC"
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|-valign="top"
!width="500px"|<big>Dynamics</big>
+
|'''GEOS-Chem website'''
!width="500px"|<big>Deposition</big>
+
|[http://www.geos-chem.org geos-chem.org]
 +
|Website that links to GEOS-Chem information and resources
  
 
|-valign="top"
 
|-valign="top"
| <!-- Dynamics -->
+
|'''Welcome Letter'''
*[[Advection scheme TPCORE]]
+
|[[GEOS-Chem welcome letter for new users]] (wiki page)
*[[Boundary layer mixing]]
+
|A welcome letter for new users of GEOS-Chem
*[[Cloud convection]]
+
*[[Dynamic tropopause]]
+
| <!-- Deposition -->
+
*[[Dry deposition]]
+
**[[Leaf area indices in GEOS-Chem]]
+
**[[Olson land map]]
+
*[[Wet deposition]]
+
  
|-valign="top" bgcolor="#CCCCCC"
+
|-valign="top"
!width="500px"|<big>Aerosols</big>
+
|'''GEOS-Chem Overview'''
!width="500px"|<big>Benchmarking and Evaluation</big>
+
|[[GEOS-Chem overview]] (wiki page)
 +
|A page with linking to many GEOS-Chem topics.
  
 
|-valign="top"
 
|-valign="top"
| <!-- Aerosols -->
+
|'''GEOS-Chem Narrative'''
*[[Aerosol-only simulation]]
+
|[https://geos-chem.seas.harvard.edu/geos-chem-narrative geos-chem.seas.harvard.edu/geos-chem-narrative]
*[[Aerosol optical properties]]
+
|A narrative descrption of GEOS-Chem that you can include in scientific papers (plus instructions for citing GEOS-Chem)
*[[Aerosol thermodynamical equilibrium]]
+
*[[Carbonaceous aerosols]]
+
*[[Mineral dust aerosols]]
+
*[[Secondary organic aerosols]]
+
*[[Sea salt aerosols]]
+
*[[Sulfate aerosols]]
+
*Aerosol Microphysics
+
**[[APM aerosol microphysics|APM]]
+
**[[TOMAS aerosol microphysics|TOMAS]]
+
| <!-- Benchmarks -->
+
*[[GEOS-Chem_benchmarking|General info about GEOS-Chem benchmark simulations]]
+
**[[GEOS-Chem_versions_under_development|List of GEOS-Chem 1-year benchmark simulations]]
+
**[[Mean OH concentration]]
+
**[[GEOS-Chem 12 benchmark history]]
+
**[[GEOS-Chem v11-02 benchmark history]]
+
**[[GEOS-Chem v11-01 benchmark history]]
+
**[[GEOS-Chem participation in community intercomparisons]]
+
**[[Satellite_Specifications_Table|Satellite Instrument Specifications Table]]
+
  
|-valign="top" bgcolor="#CCCCCC"
+
|-valign="top"
!width="500px"|<big>Nested grid simulations</big>
+
|'''GEOS-Chem New Developments'''
!width="500px"|<big>Diagnostics</big>
+
|[https://geos-chem.seas.harvard.edu/geos-new-developments geos-chem.seas.harvard.edu/geos-new-developments]
 +
|A list of significant GEOS-Chem updates and the developers who worked on them
  
 
|-valign="top"
 
|-valign="top"
| <!-- Nested grid -->
+
|'''GEOS-Chem Steering Committee (GCSC)'''
*[[GEOS-Chem nested grid simulations]]
+
|[http://geos-chem.seas.harvard.edu/geos-steering-cmte geos-chem.seas.harvard.edu/geos-steering-cmte]
*[[Setting up GEOS-Chem nested grid simulations]]
+
|A listing of current GCSC members and minutes from GCSC meetings
*[[Available met data for nested grid simulations]]
+
*[http://acmg.seas.harvard.edu/geos/wiki_docs/nested_grids/geos_data_downloads.pdf Protocol for nested-grid data downloads]
+
*[[Steps to setup new nested domains]]
+
*[[GEOS-Chem nested model publications]]
+
| <!-- Diagnostics -->
+
*Available diagnostics in GEOS-Chem...
+
**[[List of diagnostics archived to bpch format|... in binary punch (aka bpch) format]]
+
**[[List of diagnostics archived to netCDF format|... in netCDF format]]
+
*[[The HEMCO User's Guide#Diagnostics|Archiving diagnostics from HEMCO to netCDF files]]
+
*[[Diagnostic time step]]
+
*[[Mass Flux (ND24/25/26)]]
+
*[[Additional diagnostics]]
+
  
|-valign="top" bgcolor="#CCCCCC"
+
|-valign="top"
!width="500px"|<big>Related projects</big>
+
|'''GEOS-Chem Working Groups'''
!width="500px"|<big>Other resources</big>
+
|[https://geos-chem.seas.harvard.edu/geos-working-groups geos-chem.seas.harvard.edu/geos-working-groups]
 +
|A listing of GEOS-Chem Working Groups and Working Group Co-Chairs
  
 
|-valign="top"
 
|-valign="top"
|<!-- Projects -->
+
|'''GEOS-Chem Versions'''
*[[GEOS-Chem HP]]
+
|[[GEOS-Chem versions]] (wiki page)
*[[GEOS-Chem Adjoint]]
+
|A listing of GEOS-Chem versions (with links for more information)
*[[GEOS-Chem Near-Real-Time Simulations]]
+
*[[FlexAOD]]
+
*[[ATom Related GEOS-Chem Projects]]
+
|<!-- Other resources -->
+
*[http://www.researcherid.com/rid/C-5595-2014 GEOS-Chem publications page on ResearcherID]
+
*[http://acmg.seas.harvard.edu/geos/meetings/2018_GCA/presentationsposters.html Presentations from the GCA1 meeting (2018)]
+
*[http://acmg.seas.harvard.edu/geos/meetings/2017/presentationsposters.html Presentations from the IGC8 Meeting (2017)]
+
*[http://acmg.seas.harvard.edu/geos/meetings/2015/presentationsposters.html Presentations from the IGC7 meeting (2015)]
+
*[http://acmg.seas.harvard.edu/geos/meetings/2013/presentations.html Presentations from the IGC6 meeting (2013)]
+
|}
+
 
+
<br>
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|-height="50" bgcolor="#00AAAA" align="center"
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|colspan="2"|<p><font color="#FFFFFF" size="+2">'''Reference Section'''</font></p>
+
 
+
|-valign="top" bgcolor="#CCCCCC"
+
!width="500px"|<big>IDL</big>
+
!width="500px"|<big>GAMAP</big>
+
  
 
|-valign="top"
 
|-valign="top"
| <!-- IDL -->
+
|'''GEOS-Chem Species List'''
*[http://www.harrisgeospatial.com/docs/using_idl_home.html Using IDL (Harris Geospatial Solutions site)]
+
|[[Guide to species in GEOS-Chem]] (wiki page)
*[http://idlastro.gsfc.nasa.gov/idl_html_help/Structures.html Structures in IDL]
+
|A listing of the species used in the GEOS-Chem chemistry mechanisms
*[http://idlastro.gsfc.nasa.gov/idl_html_help/Pointers.html Pointers in IDL]
+
*[http://idlastro.gsfc.nasa.gov/idl_html_help/Overview_of_Mathematics_in_IDL.html Overview of Mathematics in IDL]
+
*[http://idlastro.gsfc.nasa.gov/homepage.html IDL Astronomy User's Library]
+
*[http://fermi.jhuapl.edu/s1r/idl/idl.html JHU/APL/S1R IDL routines page]
+
*[http://cow.physics.wisc.edu/~craigm/idl/idl.html Craig Markwardt's IDL library]
+
*[[Reading binary files in IDL]]
+
| <!-- GAMAP -->
+
*[http://acmg.seas.harvard.edu/gamap/ GAMAP web page]
+
*[http://acmg.seas.harvard.edu/gamap/doc/ GAMAP on-line users' guide]
+
*[[GAMAP bugs and fixes]]
+
*[[GAMAP tips and tricks]]
+
**[[General GAMAP usage]]
+
**[[TVMAP cheat sheet]]
+
**[[File I/O with GAMAP]]
+
***[http://acmg.seas.harvard.edu/gamap/doc/timeseries_brief_tutorial.pdf Working with timeseries output in GAMAP]
+
**[[Color and graphics with GAMAP]]
+
***[http://acmg.seas.harvard.edu/geos/wiki_docs/gamap/gamap_color_table_file.pdf Loading Color Tables in GAMAP v2.12]
+
*** [http://acmg.seas.harvard.edu/forum_files/cdh_ColorInIDL.pdf Working with color in IDL by Chris Holmes]
+
**[[Regridding with GAMAP]]
+
**[[Date and time computations with GAMAP]]
+
**[[Text manipulation with GAMAP]]
+
 
+
|-valign="top" bgcolor="#CCCCCC"
+
!width="500px"|<big>Fortran</big>
+
!width="500px"|<big>Perl</big>
+
  
 
|-valign="top"
 
|-valign="top"
|<!-- Fortran -->
+
|'''Requesting Support'''
*[[Intel Fortran Compiler]]
+
|[[Submitting GEOS-Chem support requests]] (wiki page)
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v11.pdf Version 11.1]
+
|Instructions for creating GEOS-Chem support requests using the Github issue trackers
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v12.pdf Version 12.1]
+
**[https://nf.nci.org.au/facilities/software/intel-ct/13.2.146/Documentation/en_US/compiler_f/main_for/index.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747 Version XE 13.1]
+
**[https://software.intel.com/en-us/compiler_15.0_ug_f Version 15.0]
+
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/PDF_Fortran_Compiler_UG_17_0.pdf Version 17]
+
*[[PGI Fortran compiler]]
+
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgiug.pdf User Guide]
+
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgifortref.pdf Reference Guide]
+
*[[GNU Fortran compiler]]
+
*[[GEOS-Chem basics#Fortran resources|Fortran tutorials]]
+
|<!-- Perl -->
+
*[http://www.perl.com Perl.com]
+
*[http://www.perl.org/books/beginning-perl/ ''Beginning Perl'' by Simon Cozens (free online book)]
+
*[http://backpan.perl.org/authors/id/Q/QU/QUONG/perlin20.html Perl in 20 pages]
+
*[http://www.enginsite.com/Library-Robert%27s-Perl-Tutorial.htm MediaWiki User's Guide]
+
*[http://www.cpan.org/ Comprehensive Perl Archive Network (CPAN.org)]
+
 
+
|-valign="top" bgcolor="#CCCCCC"
+
!width="500px"|<big>R</big>
+
!width="500px"|<big>Python</big>
+
  
 
|-valign="top"
 
|-valign="top"
|<!-- R -->
+
|'''Submitting code or data'''
*[http://www.r-project.org/ The R project for statistical computing]
+
|[[Submitting updates for inclusion in GEOS-Chem]] (wiki page)
*[http://journal.r-project.org/ The R journal]
+
|Instructions for submitting new source code or data updates to be included into GEOS-Chem.
*[http://www.mayin.org/ajayshah/KB/R/index.html R by example]
+
*[[Using R to analyze GEOS-Chem data]]
+
|<!-- Python -->
+
*[[Python code for GEOS-Chem]]
+
*[http://www.python.org Python.org]: Main site for all things Python
+
*[http://docs.python.org/2/tutorial/ Python.org Tutorial]
+
*[http://wiki.python.org/moin/BeginnersGuide/Programmers PythonWiki.org: List of tutorials and resources]
+
*[https://developers.google.com/edu/python/ Google's Python tutorial]
+
  
|-valign="top" bgcolor="#CCCCCC"
 
!width="500px"|<big>NCAR Command Language (NCL)</big>
 
!width="500px"|<big>Wiki documentation</big>
 
 
|-valign="top"
 
|<!-- NCL -->
 
*[http://www.ncl.ucar.edu/ NCL main page]
 
*[http://www.ncl.ucar.edu/Applications/ NCL applications]
 
*[http://www.ncl.ucar.edu/Document/ NCL documentation]
 
*[http://www.ncl.ucar.edu/Support/email_lists.shtml Sign up for NCL-Talk email list]
 
*[[NCL_tools_for_GEOS-Chem|NCL4GC: NCL tools for GEOS-Chem]]
 
|<!-- Wiki doc -->
 
*[[Sandbox]]
 
*[http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
 
*[http://meta.wikimedia.org/wiki/Help:Contents MediaWiki User's Guide]
 
*[http://meta.wikimedia.org/wiki/Help:Wikitext Examples of Wiki markup text]
 
*[http://meta.wikimedia.org/wiki/Help:Reference_card One-page editing reference card]
 
*[http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration Settings list]
 
*[http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
 
 
|}
 
|}

Latest revision as of 18:49, 2 May 2022

GEOS–Chem Wiki


GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment
through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.

The GEOS–Chem model is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the NASA Global Modeling and Assimilation Office. It is applied by research groups around the world to a wide range of atmospheric composition problems. Central management and support of the model is provided by the Atmospheric Chemistry Modeling Group at Harvard University and by the Atmospheric Composition Analysis Group at Washington University.

GEOS-Chem overview
Past releases Current release: GEOS-Chem 13.4.0 Future releases

News

For access to all past GEOS-Chem newsletters, visit this page.

Documentation

GEOS-Chem manuals and tutorials

The table below lists the various manual pages for GEOS-Chem and its related software packages.

Item Link Description
GEOS-Chem Classic Getting Started with GEOS-Chem (wiki page)
  • NOTE: Will be ported to geos-chem.readthedocs.io soon
GEOS-Chem single-node implementation
(using 1-64 computational cores)
GCHP gchp.readthedocs.io GEOS-Chem multi-node "high performance" implementation
(using 100's - 1000's of computational cores)
GEOS-Chem on the cloud cloud.geos-chem.org Instructions for running GEOS-Chem on the Amazon Web Services EC2 cloud-computing platform
WRF-GC wrf.geos-chem.org

wrfgc.readthedocs.io

GEOS-Chem coupled to the WRF weather model
HEMCO hemco.readthedocs.io The Harmonized Emissions Component
GCPy gcpy.readthedocs.io The GEOS-Chem Python Toolkit
KPP-for-GEOS-Chem kpp.readthedocs.io The Kinetic PreProcessor (KPP), customized for GEOS-Chem
GEOS-Chem Adjoint GEOS-Chem Adjoint (wiki page) The GEOS-Chem adjoint model
(NOTE: maintained separately from GEOS-Chem)
GEOS-Chem Videos youtube.com/c/geos-chem Tutorial videos for GEOS-Chem, GCHP, HEMCO, GCPy, etc., and recordings of GEOS-Chem meeting sessions
GEOS-Chem Guides GEOS-Chem Guides (wiki page) Short manuals giving a deeper dive into various GEOS-Chem topics (such as compilers, netCDF, diagnostics, etc.)

General information about GEOS-Chem

The table below lists where you can find general information about GEOS-Chem.

Item Link Description
GEOS-Chem website geos-chem.org Website that links to GEOS-Chem information and resources
Welcome Letter GEOS-Chem welcome letter for new users (wiki page) A welcome letter for new users of GEOS-Chem
GEOS-Chem Overview GEOS-Chem overview (wiki page) A page with linking to many GEOS-Chem topics.
GEOS-Chem Narrative geos-chem.seas.harvard.edu/geos-chem-narrative A narrative descrption of GEOS-Chem that you can include in scientific papers (plus instructions for citing GEOS-Chem)
GEOS-Chem New Developments geos-chem.seas.harvard.edu/geos-new-developments A list of significant GEOS-Chem updates and the developers who worked on them
GEOS-Chem Steering Committee (GCSC) geos-chem.seas.harvard.edu/geos-steering-cmte A listing of current GCSC members and minutes from GCSC meetings
GEOS-Chem Working Groups geos-chem.seas.harvard.edu/geos-working-groups A listing of GEOS-Chem Working Groups and Working Group Co-Chairs
GEOS-Chem Versions GEOS-Chem versions (wiki page) A listing of GEOS-Chem versions (with links for more information)
GEOS-Chem Species List Guide to species in GEOS-Chem (wiki page) A listing of the species used in the GEOS-Chem chemistry mechanisms
Requesting Support Submitting GEOS-Chem support requests (wiki page) Instructions for creating GEOS-Chem support requests using the Github issue trackers
Submitting code or data Submitting updates for inclusion in GEOS-Chem (wiki page) Instructions for submitting new source code or data updates to be included into GEOS-Chem.