Difference between revisions of "Main Page"

From Geos-chem
Jump to: navigation, search
 
(366 intermediate revisions by 9 users not shown)
Line 1: Line 1:
<!-- ======================================================== -->
+
__NOTOC__
<!-- ===== TOP TITLE                                    ===== -->
+
{|border="1" width="925px" bordercolor="#000000" cellspacing="0" cellpadding="5"
<!-- ======================================================== -->
+
<table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding=5" align="center">
+
|-valign="middle" height="80" bgcolor="##4494cc;" align="center"
<tr bgcolor="#FF0000">
+
|<p><font color="#FFFFFF" size="+3">'''GEOS&#150;Chem Wiki'''</font></p>
<th colspan="2" height="80" valign="middle"><p><font color="#FFFFFF" size="+3">GEOS&#150;Chem Wiki</font></p></th>
+
</tr>
+
</table>
+
  
<blockquote><p align="justify">The [http://acmg.seas.harvard.edu/geos/ GEOS–Chem model] is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the [http://www.as.harvard.edu NASA Global Modeling and Assimilation Office]. It is applied by [http://acmg.seas.harvard.edu/geos/geos_people.html research groups around the world] to a wide range of atmospheric composition problems, Central management and support of the model is provided by the [http://acmg.seas.harvard.edu/index.html Atmospheric Chemistry Modeling Group at Harvard University.]</p></blockquote>
+
|}
  
<blockquote><p align="justify">This wiki is meant to facilitate communication between GEOS-Chem users and developers. If this is '''your first time here''', check out [[Features of the GEOS-Chem public wiki|the features page]]. If you would like to contribute to the wiki, please register as a user by clicking ''create account'' at the top right corner of this page.</p></blockquote>
+
{|border="0" width="925px" bordercolor="#FFFFFF" cellspacing="0" cellpadding="5"
  
<blockquote><p align="justify">New information is continually being added to the wiki, so please check back here often, or even better, [[Features_of_the_GEOS-Chem_public_wiki#Let_the_GEOS-Chem_wiki_inform_you_of_recent_changes.21|subscribe to the recent changes' RSS feed]]: you will not miss a discussion!</p></blockquote>
+
|-valign="top"
 +
|
  
<blockquote>
+
----
<p><big><strong>Current public release: [[GEOS-Chem v9-01-03]]</strong></big></p>
+
<p><big><strong>Version in development: [[GEOS-Chem v9-02]]</strong></big></p>
+
</blockquote>
+
  
<!-- ======================================================== -->
+
<p align="center"><big>'''GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment<br>through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.'''</big></p>
<!-- ===== GENERAL INFO ABOUT GEOS-CHEM                ===== -->
+
<!-- ======================================================== -->
+
<p>&nbsp;</p>
+
<table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center">
+
  
<tr bgcolor="#00AAAA">
+
The [http://acmg.seas.harvard.edu/geos/ GEOS–Chem model] is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the [http://gmao.gsfc.nasa.gov/ NASA Global Modeling and Assimilation Office]. It is applied by [http://acmg.seas.harvard.edu/geos/geos_people.html research groups around the world] to a wide range of atmospheric composition problems. Central management and support of the model is provided by the [http://acmg.seas.harvard.edu/index.html Atmospheric Chemistry Modeling Group at Harvard University] and by the [https://sites.wustl.edu/acag/ Atmospheric Composition Analysis Group at Washington University].
<th colspan="2" height="50" valign="middle"><p><font color="#FFFFFF" size="+2">General information about GEOS&#150;Chem</font></p></th>
+
</tr>
+
  
<!-- ======================================================== -->
+
|}
<!-- ===== GENERAL INFO : FIRST ROW                    ===== -->
+
<!-- ======================================================== -->
+
  
<!-- Header title -->
+
{|border="1" width="925px" bordercolor="#000000" cellspacing="0" cellpadding="5"
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>Introduction and overview</big></th>
+
<th width="50%"scope="col"><big>Steering Committee And Working Groups</big></th>
+
</tr>
+
  
<tr>
+
|-valign="top"
 +
|colspan="3" align="center" bgcolor="#CCCCCC"|'''<font size="+2">[[GEOS-Chem overview]]</font>'''
 +
|-valign="top"
 +
|width="225px" align="center"|<font size="+2">[[GEOS-Chem versions|Past releases]]</font>
 +
|width="450px" align="center" bgcolor="#CCFFFF"|<font size="+2">[[GEOS-Chem 13.4.0|'''Current release: GEOS-Chem 13.4.0''']]</font>
 +
|width="225px" align="center"|<font size="+2">[[GEOS-Chem model development_priorities|Future releases]]</font>
  
<!-- Introduction & Overview: Links -->
+
|}
<td width="50%" valign="top">
+
* [[GEOS-Chem welcome letter for new users]]
+
* [[Features of the GEOS-Chem public wiki]]
+
* [http://acmg.seas.harvard.edu/geos/geos_overview.html GEOS-Chem Overview]
+
* [http://acmg.seas.harvard.edu/geos/geos_people.html GEOS-Chem People & Projects]
+
* [http://acmg.seas.harvard.edu/geos/word_pdf_docs/resources_guidelines_tips.pdf User Resources, Code Development Guidelines, and Debugging Tips]
+
* [[GEOS-Chem Support Team]]
+
* [[GEOS-Chem newsletters]]
+
* [http://acmg.seas.harvard.edu/geos/geos_search.html GEOS-Chem Search Engines]
+
* [http://acmg.seas.harvard.edu/geos/geos_credit.html Recommendations for offering co-authorships to GEOS-Chem developers]
+
* [http://acmg.seas.harvard.edu/geos/geos_dev_history.html GEOS-Chem code development history]
+
  
</td>
+
== News ==
 +
*'''02 May 2022:''' [[GEOS-Chem 13.4.0]] is now available!
 +
*'''24 Feb 2022:''' Read the [[Media:GEOS-Chem_Newsletter_2022_Issue_1.pdf|GEOS-Chem Newsletter 2022, Issue #1]]
 +
*'''11 Dec 2020:''' A [https://scholar.google.com/citations?user=ho-sNj4AAAAJ GEOS-Chem Google Scholar page] is now available!
 +
**Click 'Follow' to be notified of new publications.
 +
**Contact [mailto:gxl642@student.bham.ac.uk Gongda Lu] with issues or questions.
 +
*'''02 Apr 2020:''' The GEOS-Chem Youtube Channel has 100+ subscribers and a new URL: <tt>'''https://youtube.com/c/geoschem'''</tt>
 +
*'''03 Feb 2020:''' View our GEOS-Chem "dry-run" tutorial at our [http://youtube.geos-chem.org GEOS-Chem Youtube channel]
 +
*'''17 Sep 2019:''' NASA/GMAO is now producing [https://gmao.gsfc.nasa.gov/weather_prediction/GEOS-CF/ GEOS chemical forecasts (GEOS-CF)] using GEOS-Chem coupled to the NASA/GEOS ESM
  
<!-- Steering Committee and Working Groups: Links -->
+
For access to all past GEOS-Chem newsletters, visit [[GEOS-Chem newsletters|this page]].
<td width="50%" valign="top">
+
* [http://acmg.seas.harvard.edu/geos/geos_steering_cmte.html GEOS-Chem Steering Committee]
+
** [[GEOS-Chem model development priorities]]
+
* [http://acmg.seas.harvard.edu/geos/geos_working_groups.html GEOS-Chem Working Groups]
+
** [[GEOS-Chem Adjoint|Adjoint Model and Data Assimilation Working Group]]
+
** [[Aerosols_overview:_projects_and_developments|Aerosols Working Group]]
+
** [[Carbon Gases and Organics Working Group]]
+
** [[Chemistry-Climate Working Group]]
+
** [[Hg and POPs Working Group]]
+
** [[Chemistry Issues|Oxidants and Chemistry Working Group]]
+
** [[Nested Model Working Group]]
+
** [[Sources and Sinks Working Group]]
+
</td>
+
  
</tr>
+
== Documentation ==
  
<!-- ======================================================== -->
+
=== GEOS-Chem manuals and tutorials ===
<!-- ===== GENERAL INFO : SECOND ROW                    ===== -->
+
<!-- ======================================================== -->
+
  
<!-- Header title -->
+
The table below lists the various manual pages for GEOS-Chem and its related software packages.
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>Getting Started With GEOS-Chem</big></th>
+
<th width="50%"scope="col"><big>General Technical Information</big></th>
+
</tr>
+
  
<tr>
+
{| border=1 cellpadding=5 cellspacing=0
  
<!-- Getting Started With GEOS-Chem: Links -->
+
|-valign="top"
<td width="50%" valign="top">
+
!width="200px" bgcolor="#CCCCCC"|Item
* [[Frequently asked questions about GEOS-Chem]]
+
!width="360px" bgcolor="#CCCCCC"|Link
* [[Minimum system requirements for GEOS-Chem]]
+
!width="375px" bgcolor="#CCCCCC"|Description
* [[GEOS-Chem supported platforms and compilers]]
+
* [[Downloading GEOS-Chem source code and data]]
+
* [[GEOS-Chem code development cycle]]
+
* [[GEOS-Chem programming resources]] (e.g. tutorials, user guides, etc.)
+
* [http://acmg.seas.harvard.edu/geos/doc/man/appendix_7.html GEOS-Chem Programming Style Guide]
+
* [[Running GEOS-Chem with TESTRUN]]
+
</td>
+
  
<!-- General Technical Information: Links -->
+
|-valign="top"
<td width="50%" valign="top">
+
|'''GEOS-Chem Classic'''
* [[Initial conditions for GEOS-Chem]]
+
|[[Getting Started with GEOS-Chem]] (wiki page)
* [[GEOS-Chem Debugging Tips|Tips on how to debug GEOS-Chem effectively]]
+
*NOTE: Will be ported to geos-chem.readthedocs.io soon
* [[Reporting GEOS-Chem bugs]]
+
|GEOS-Chem single-node implementation<br>(using 1-64 computational cores)
* [[Parallelizing GEOS-Chem]] with the OpenMP directives
+
* [[Common GEOS-Chem error messages]]
+
* [[Adding tracers to GEOS-Chem|Adding advected tracers and chemical species to GEOS-Chem]]
+
* [[Adding Passive Tracers|Adding passive (CO-like) tracers to GEOS-Chem]]
+
</td>
+
  
</tr>
+
|-valign="top"
</table>
+
|'''GCHP'''
 +
|[https://gchp.readthedocs.io gchp.readthedocs.io]
 +
|GEOS-Chem multi-node "high performance" implementation<br>(using 100's - 1000's of computational cores)
  
<!-- ======================================================== -->
+
|-valign="top"
<!-- ===== CODE DEVELOPER'S FORUMS: TITLE              ===== -->
+
|'''GEOS-Chem on the cloud'''
<!-- ======================================================== -->
+
|[http://cloud.geos-chem.org cloud.geos-chem.org]
<p>&nbsp;</p>
+
|Instructions for running GEOS-Chem on the Amazon Web Services EC2 cloud-computing platform
<table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center">
+
  
<tr bgcolor="#00AAAA">
+
|-valign="top"
<th colspan="2" height="50" valign="middle"><p><font color="#FFFFFF" size="+2">GEOS&#150;Chem Code Developers' Forums</font></p></th>
+
|'''WRF-GC'''
</tr>
+
|[http://wrf.geos-chem.org wrf.geos-chem.org]
 +
[https://wrfgc.readthedocs.io wrfgc.readthedocs.io]
 +
|GEOS-Chem coupled to the WRF weather model
  
<!-- ======================================================== -->
+
|-valign="top"
<!-- ===== CODE DEVELOPER'S FORUMS : FIRST ROW          ===== -->
+
|'''HEMCO'''
<!-- ======================================================== -->
+
|[https://hemco.readthedocs.io hemco.readthedocs.io]
<tr bgcolor="#cccccc">
+
|The Harmonized Emissions Component
<th width="50%"scope="col"><big>Coding</big></th>
+
<th width="50%"scope="col"><big>Diagnostics</big></th>
+
</tr>
+
  
<tr>
+
|-valign="top"
 +
|'''GCPy'''
 +
|[https://gcpy.readthedocs.io gcpy.readthedocs.io]
 +
|The GEOS-Chem Python Toolkit
  
<!-- Coding: Links -->
+
|-valign="top"
<td width="50%" valign="top">
+
|'''KPP-for-GEOS-Chem'''
* [[GEOS-Chem versions under development]]
+
|[https://kpp.readthedocs.io kpp.readthedocs.io]
* [[Bugs and fixes|List of GEOS-Chem bugs and in which version they were resolved]]
+
|The Kinetic PreProcessor (KPP), customized for GEOS-Chem
* [[Currently unresolved issues in GEOS-Chem]]
+
* [[Common GEOS-Chem error messages]]
+
* [[GEOS-Chem performance]]
+
* [[Machine issues & portability]]
+
* [[Passing array arguments efficiently in GEOS-Chem]]
+
* [[Floating point math issues]]
+
* [[Version control with Git]]
+
</td>
+
  
<!-- Diagnostics: Links -->
+
|-valign="top"
<td width="50%" valign="top">
+
|'''GEOS-Chem Adjoint'''
* [http://acmg.seas.harvard.edu/geos/doc/man/appendix_5.html Overview of diagnostics characteristics]
+
|[[GEOS-Chem Adjoint]] (wiki page)
* [[Diagnostic time step]]
+
|The GEOS-Chem adjoint model<br> (NOTE: maintained separately from GEOS-Chem)
* [[Mass Flux (ND24/25/26)]]
+
* [[Additional diagnostics]]
+
</td>
+
  
</tr>
+
|-valign="top"
 +
|'''GEOS-Chem Videos'''
 +
|[https://youtube.com/c/geos-chem youtube.com/c/geos-chem]
 +
|Tutorial videos for GEOS-Chem, GCHP, HEMCO, GCPy, etc., and recordings of GEOS-Chem meeting sessions
  
<!-- ======================================================== -->
+
|-valign="top"
<!-- ===== CODE DEVELOPER'S FORUMS : SECOND ROW        ===== -->
+
|'''GEOS-Chem Guides'''
<!-- ======================================================== -->
+
|[[GEOS-Chem overview#GEOS-Chem Guides|GEOS-Chem Guides]] (wiki page)
 +
|Short manuals giving a deeper dive into various GEOS-Chem topics (such as compilers, netCDF, diagnostics, etc.)
  
<!-- Header title -->
+
|}
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>Emissions</big></th>
+
<th width="50%"scope="col"><big>Chemistry</big></th>
+
</tr>
+
  
<tr>
+
=== General information about GEOS-Chem ===
  
<!-- Emissions: Links -->
+
The table below lists where you can find general information about GEOS-Chem.
<td width="50%" valign="top">
+
* [[Emissions overview]]
+
* [[Aerosol emissions]]
+
* [[Aircraft emissions]]
+
* [[Anthropogenic emissions]]
+
** [http://acmg.seas.harvard.edu/geos/word_pdf_docs/emissions_v8_02_03.pdf Anthropogenic emissions in GEOS-Chem v8-02-03]
+
** [http://wiki.seas.harvard.edu/geos-chem/images/Anth_emiss_gc_v8-01-04.pdf Anthropogenic emissions in GEOS-Chem v8-01-04]
+
** [http://acmg.seas.harvard.edu/geos/word_pdf_docs/INVENTORY_GC_public-pre_v8.pdf Anthropogenic emissions prior to v8-01-01]
+
** [[Scale factors for anthropogenic emissions]]
+
* [[Biofuel emissions]]
+
* [[Biogenic emissions]]
+
* [[Biomass burning emissions]]
+
* [[Lightning NOx emissions]]
+
* [[Ship emissions]]
+
* [[Soil NOx emissions]]
+
* [[Volcanic SO2 emissions from Aerocom|Volcanic emissions]]
+
</td>
+
  
<!-- Chemistry Links -->
+
{| border=1 cellpadding=5 cellspacing=0
<td width="50%" valign="top">
+
* Standard chemistry mechanisms in GEOS-Chem
+
** [[Updating standard chemistry with JPL 10-6]]
+
** [[NOx-Ox-HC-aerosol|NOx-Ox-hydrocarbon-aerosol (aka "full-chemistry") simulation]]
+
** [[KPP solvers FAQ|KPP chemical solver]]
+
** [[Linoz stratospheric ozone chemistry]]
+
** [[Stratospheric chemistry]]
+
** [[Photolysis mechanism|FAST-J photolysis mechanism]]
+
* Optional chemistry mechanisms in GEOS-Chem
+
** [[Dicarbonyls simulation]]
+
** [[New isoprene scheme|Caltech isoprene chemistry scheme (v8-03-01+)]]
+
** [[Bromine chemistry mechanism]]
+
* [[Offline chemistry simulations]] in GEOS-Chem
+
* Other resources
+
** [[Chemistry Issues]]
+
** [[Development of Fast-JX in GEOS-Chem]]
+
** [[DSMACC chemical box model]]
+
** [[Isoprene|List of recent papers about isoprene]]
+
** [[Linking GEOS-Chem to CMAQ]]
+
</tr>
+
  
<!-- ======================================================== -->
+
|-valign="top"
<!-- ===== CODE DEVELOPER'S FORUMS : THIRD ROW        ===== -->
+
!width="200px" bgcolor="#CCCCCC"|Item
<!-- ======================================================== -->
+
!width="360px" bgcolor="#CCCCCC"|Link
 +
!width="365px" bgcolor="#CCCCCC"|Description
  
<!-- Header title -->
+
|-valign="top"
<tr bgcolor="#cccccc">
+
|'''GEOS-Chem website'''
<th width="50%"scope="col"><big>Dynamics</big></th>
+
|[http://www.geos-chem.org geos-chem.org]
<th width="50%"scope="col"><big>Deposition</big></th>
+
|Website that links to GEOS-Chem information and resources
</tr>
+
  
<tr>
+
|-valign="top"
 +
|'''Welcome Letter'''
 +
|[[GEOS-Chem welcome letter for new users]] (wiki page)
 +
|A welcome letter for new users of GEOS-Chem
  
<!-- Dynamics: Links -->
+
|-valign="top"
<td width="50%" valign="top">
+
|'''GEOS-Chem Overview'''
* [[Advection scheme TPCORE]]
+
|[[GEOS-Chem overview]] (wiki page)
* [[Boundary layer mixing]]
+
|A page with linking to many GEOS-Chem topics.
* [[Cloud convection]]
+
* [[Dynamic tropopause]]
+
</td>
+
  
<!-- Deposition: Links -->
+
|-valign="top"
<td width="50%" valign="top">
+
|'''GEOS-Chem Narrative'''
* [[Dry deposition]]
+
|[https://geos-chem.seas.harvard.edu/geos-chem-narrative geos-chem.seas.harvard.edu/geos-chem-narrative]
**[[Leaf area indices in GEOS-Chem]]
+
|A narrative descrption of GEOS-Chem that you can include in scientific papers (plus instructions for citing GEOS-Chem)
* [[Wet deposition]]
+
</td>
+
  
</tr>
+
|-valign="top"
 +
|'''GEOS-Chem New Developments'''
 +
|[https://geos-chem.seas.harvard.edu/geos-new-developments geos-chem.seas.harvard.edu/geos-new-developments]
 +
|A list of significant GEOS-Chem updates and the developers who worked on them
  
<!-- ======================================================== -->
+
|-valign="top"
<!-- ===== CODE DEVELOPER'S FORUMS : FOURTH ROW        ===== -->
+
|'''GEOS-Chem Steering Committee (GCSC)'''
<!-- ======================================================== -->
+
|[http://geos-chem.seas.harvard.edu/geos-steering-cmte geos-chem.seas.harvard.edu/geos-steering-cmte]
 +
|A listing of current GCSC members and minutes from GCSC meetings
  
<!-- Header title -->
+
|-valign="top"
<tr bgcolor="#cccccc">
+
|'''GEOS-Chem Working Groups'''
<th width="50%"scope="col"><big>Aerosols</big></th>
+
|[https://geos-chem.seas.harvard.edu/geos-working-groups geos-chem.seas.harvard.edu/geos-working-groups]
<th width="50%"scope="col"><big>Met Fields</big></th>
+
|A listing of GEOS-Chem Working Groups and Working Group Co-Chairs
</tr>
+
  
<tr>
+
|-valign="top"
 +
|'''GEOS-Chem Versions'''
 +
|[[GEOS-Chem versions]] (wiki page)
 +
|A listing of GEOS-Chem versions (with links for more information)
  
<!-- Aerosols: Links -->
+
|-valign="top"
<td width="50%" valign="top">
+
|'''GEOS-Chem Species List'''
* [[Aerosols overview: projects and developments|Aerosols working group]]
+
|[[Guide to species in GEOS-Chem]] (wiki page)
* [[Aerosol-only simulation]]
+
|A listing of the species used in the GEOS-Chem chemistry mechanisms
* [[Aerosol optical properties]]
+
* [[Aerosol thermodynamical equilibrium]]
+
* [[Carbonaceous aerosols]]
+
* [[Mineral dust aerosols]]
+
* [[Secondary organic aerosols]]
+
* [[Sea salt aerosols]]
+
* [[Sulfate aerosols]]
+
* Aerosol Microphysics
+
** [[APM aerosol microphysics|APM]]
+
** [[TOMAS aerosol microphysics|TOMAS]]
+
</td>
+
  
<!-- Met Fields: Links -->
+
|-valign="top"
<td width="50%" valign="top">
+
|'''Requesting Support'''
* [[GCAP]]
+
|[[Submitting GEOS-Chem support requests]] (wiki page)
* [[Overview of GMAO met data products]]
+
|Instructions for creating GEOS-Chem support requests using the Github issue trackers
* [[GMAO GEOS-4]]
+
* [[GEOS-5|GMAO GEOS-5]]
+
** [[List of GEOS-5 met fields|List of GEOS-5 met fields used by GEOS-Chem]]
+
** [[GEOS-5 issues]]
+
** [[GEOS-5 met field reprocessing]]
+
* [[MERRA|GMAO MERRA "reanalysis"]]
+
** [[List of MERRA met fields|List of MERRA met fields used by GEOS-Chem]]
+
** [[MERRA implementation details|Implementing MERRA into GEOS-Chem]]
+
* [[GEOS-5.7.2|GMAO GEOS-5.7.2]]
+
** [[List of GEOS-5.7.2 met fields|List of GEOS-5.7.2 met fields proposed for GEOS-Chem]]
+
* [http://acmg.seas.harvard.edu/geos/doc/man/appendix_4.html GEOS-Chem Met Fields (from website)]
+
** [[Notes regarding GEOS vertical grids]]
+
</td>
+
  
</tr>
+
|-valign="top"
 +
|'''Submitting code or data'''
 +
|[[Submitting updates for inclusion in GEOS-Chem]] (wiki page)
 +
|Instructions for submitting new source code or data updates to be included into GEOS-Chem.
  
<!-- ======================================================== -->
+
|}
<!-- ===== CODE DEVELOPER'S FORUMS : FIFTH ROW          ===== -->
+
<!-- ======================================================== -->
+
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>Nested Grid Simulations</big></th>
+
<th width="50%"scope="col"><big>Earth System Model Framework</big></th>
+
</tr>
+
 
+
<tr>
+
 
+
<!-- Nested Grid Simulations: Links -->
+
<td width="50%" valign="top">
+
* [[GEOS-Chem nested grid simulations]]
+
* [[Setting up GEOS-Chem nested grid simulations]]
+
* [[Available met data for nested grid simulations]]
+
* [http://acmg.seas.harvard.edu/geos/wiki_docs/nested_grids/geos_data_downloads.pdf Protocol for nested-grid data downloads]
+
</td>
+
 
+
<!-- Met Fields: Links -->
+
<td width="50%" valign="top">
+
* [[Installing ESMF and other required libraries]]
+
* [[Code development with the Earth System Model Framework]]
+
* [[Automatic documentation with protex|Generating automatic LaTeX documentation with protex]]
+
** [http://frodo.elon.edu/tutorial/tutorial/tutorial.html Web-based LaTeX tutorial]
+
</td>
+
 
+
</tr>
+
 
+
<!-- ======================================================== -->
+
<!-- ===== CODE DEVELOPER'S FORUMS : SIXTH ROW          ===== -->
+
<!-- ======================================================== -->
+
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>Benchmarking and Evaluation</big></th>
+
<th width="50%"scope="col"><big>Related Projects</big></th>
+
</tr>
+
 
+
<tr>
+
 
+
<!-- Diagnostics: Links -->
+
<td width="50%" valign="top">
+
* [http://acmg.seas.harvard.edu/geos/geos_benchmark.html General info about GEOS-Chem benchmark simulations]
+
* [http://acmg.seas.harvard.edu/geos/geos_1yr_plots.html List of GEOS-Chem 1-year benchmark simulations]
+
* [[Mean OH lifetime in GEOS-Chem]]
+
* [ftp://ftp.as.harvard.edu/pub/geos-chem/1yr_benchmarks/ FTP site with output from 1-year GEOS-Chem benchmark simulations]
+
* [[GEOS-Chem participation in community intercomparisons]]
+
* [[Satellite_Specifications_Table|Satellite Instrument Specifications Table]]
+
</td>
+
 
+
<!-- Related Projects: Links -->
+
<td width="50%" valign="top">
+
* [[Grid-independent GEOS-Chem]]
+
* [[GEOS-Chem Adjoint]]
+
* [[GEOS-Chem Near-Real-Time Simulations]]
+
* [[FlexAOD]]
+
</td>
+
 
+
</tr>
+
</table>
+
 
+
<!-- ======================================================== -->
+
<!-- ===== REFERENCE: TITLE                            ===== -->
+
<!-- ======================================================== -->
+
<p>&nbsp;</p>
+
<table width="100%" border="1" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center">
+
 
+
<tr bgcolor="#00AAAA">
+
<th colspan="2" height="50" valign="middle"><p><font color="#FFFFFF" size="+2">Reference Section</font></p></th>
+
</tr>
+
 
+
<!-- ======================================================== -->
+
<!-- ===== REFERENCE: FIRST ROW                        ===== -->
+
<!-- ======================================================== -->
+
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>IDL</big></th>
+
<th width="50%"scope="col"><big>GAMAP</big></th>
+
</tr>
+
 
+
<tr>
+
 
+
<!-- IDL: Links -->
+
<td width="50%" valign="top">
+
* [http://www.exelisvis.com/ Exelis Visual Information Solutions (vendor)]
+
* [http://www.exelisvis.com/docs/routines-1.html Online IDL Reference Manual @ Exelis website]
+
* [http://idlastro.gsfc.nasa.gov/idl_html_help/Structures.html Structures in IDL]
+
* [http://idlastro.gsfc.nasa.gov/idl_html_help/Pointers.html Pointers in IDL]
+
* [http://idlastro.gsfc.nasa.gov/idl_html_help/Overview_of_Mathematics_in_IDL.html Overview of Mathematics in IDL]
+
* [http://www.dfanning.com/ Coyote's Guide to IDL Programming (David Fanning's Web Site)] - Lots of tips on how to accomplish programming tasks
+
* [http://www.mpimet.mpg.de/en/misc/software/idl IDL Page at Max Planck Institute for Meteorology]
+
* [http://www.mpimet.mpg.de/en/misc/software/idl/doc/mgs_script.pdf Martin Schultz's IDL Tutorial (PDF Format)]
+
* [http://idlastro.gsfc.nasa.gov/homepage.html IDL Astronomy User's Library]
+
* [http://fermi.jhuapl.edu/s1r/idl/idl.html JHU/APL/S1R IDL routines page]
+
* [http://cow.physics.wisc.edu/~craigm/idl/idl.html Craig Markwardt's IDL library]
+
* [http://cimss.ssec.wisc.edu/~gumley/doc/idltips.pdf The Underground Guide to IDL by Liam Gumley (PDF)]
+
* [[Reading binary files in IDL]]
+
</td>
+
 
+
<!-- Diagnostics: Links -->
+
<td width="50%" valign="top">
+
* [http://acmg.seas.harvard.edu/gamap/ GAMAP web page]
+
* [http://acmg.seas.harvard.edu/gamap/doc/ GAMAP on-line users' guide]
+
* [[GAMAP bugs and fixes]]
+
* [[GAMAP tips and tricks]]
+
**[[General GAMAP usage]]
+
**[[TVMAP cheat sheet]]
+
**[[File I/O with GAMAP]]
+
***[http://acmg.seas.harvard.edu/gamap/doc/timeseries_brief_tutorial.pdf Working with timeseries output in GAMAP]
+
**[[Color and graphics with GAMAP]]
+
*** [http://acmg.seas.harvard.edu/geos/wiki_docs/gamap/gamap_color_table_file.pdf Loading Color Tables in GAMAP v2.12]
+
*** [http://acmg.seas.harvard.edu/forum_files/cdh_ColorInIDL.pdf Working with color in IDL by Chris Holmes]
+
**[[Regridding with GAMAP]]
+
**[[Date and time computations with GAMAP]]
+
**[[Text manipulation with GAMAP]]
+
</td>
+
 
+
</tr>
+
 
+
<!-- ======================================================== -->
+
<!-- ===== REFERENCE: SECOND ROW                        ===== -->
+
<!-- ======================================================== -->
+
 
+
<!-- Header title -->
+
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>Fortran</big></th>
+
<th width="50%"scope="col"><big>Perl</big></th>
+
</tr>
+
 
+
<tr>
+
 
+
<!-- Fortran: Links -->
+
<td width="50%" valign="top">
+
* Intel Fortran Compiler
+
** [http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v11.pdf Version 11.1]
+
** [http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v12.pdf Version 12.1]
+
* [http://www.pgroup.com/products/ PGI Fortran]
+
* [http://www-01.ibm.com/software/awdtools/fortran/xlfortran/ IBM XL Fortran]
+
* [http://docs.sun.com/app/docs/doc/819-3686 Sun Studio 11 Fortran Compiler]
+
* [http://www.liv.ac.uk/HPC/HTMLF90Course/HTMLF90CourseSlides.html Modular Programming w/ Fortran 90 (U. Liverpool)]
+
* [http://www.liv.ac.uk/HPC/F90page.html Other University of Liverpool F90 tutorials and courses]
+
* [http://sunsite.unc.edu/pub/languages/fortran/index.html User Notes on FORTRAN Programming]
+
* [http://www.nsc.liu.se/~boein/f77to90/f77to90.html Fortran 90 for the FORTRAN 77 Programmer]
+
* [http://www.kcl.ac.uk/kis/support/cc/fortran/f90home.html#1.0 Fortran 90 Home Page at King's College, London]
+
* [http://www.cs.rpi.edu/~szymansk/oof90.html Object Oriented Fortran 90 Programming]
+
</td>
+
 
+
<!-- Perl: Links  -->
+
<td width="50%" valign="top">
+
* [http://www.perl.com Perl.com]
+
* [http://www.perl.org/books/beginning-perl/ ''Beginning Perl'' by Simon Cozens (free online book)]
+
* [http://backpan.perl.org/authors/id/Q/QU/QUONG/perlin20.html Perl in 20 pages]
+
* [http://www.enginsite.com/Library-Robert%27s-Perl-Tutorial.htm MediaWiki User's Guide]
+
* [http://www.cpan.org/ Comprehensive Perl Archive Network (CPAN.org)]
+
</td>
+
 
+
</tr>
+
 
+
<!-- Header title -->
+
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>R</big></th>
+
<th width="50%"scope="col"><big>Python</big></th>
+
</tr>
+
 
+
<tr>
+
 
+
<!-- R: links -->
+
<td width="50%" valign="top">
+
*[http://www.r-project.org/ The R project for statistical computing]
+
*[http://journal.r-project.org/ The R journal]
+
*[http://www.mayin.org/ajayshah/KB/R/index.html R by example]
+
*[[Using R to analyze GEOS-Chem data]]
+
</td>
+
 
+
<!-- Python: links -->
+
<td width="50%" valign="top">
+
*[[Python code for GEOS-Chem]]
+
*[http://www.python.org Python.org]: Main site for all things Python
+
*[http://docs.python.org/2/tutorial/ Python.org Tutorial]
+
*[http://wiki.python.org/moin/BeginnersGuide/Programmers PythonWiki.org: List of tutorials and resources]
+
*[https://developers.google.com/edu/python/ Google's Python tutorial]
+
</td>
+
 
+
</tr>
+
 
+
<!-- Header title -->
+
<tr bgcolor="#cccccc">
+
<th width="50%"scope="col"><big>Wiki Documentation</big></th>
+
<th width="50%"scope="col"><big></big></th>
+
</tr>
+
 
+
<tr>
+
 
+
<!-- Wiki Documentation: Links -->
+
<td width="50%" valign="top">
+
* [[Sandbox]]
+
* [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
+
* [http://meta.wikimedia.org/wiki/Help:Contents MediaWiki User's Guide]
+
* [http://meta.wikimedia.org/wiki/Help:Wikitext Examples of Wiki markup text]
+
* [http://meta.wikimedia.org/wiki/Help:Reference_card One-page editing reference card]
+
* [http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration Settings list]
+
* [http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
+
</td>
+
 
+
<td>
+
</td>
+
 
+
</tr>
+
 
+
</table>
+

Latest revision as of 18:49, 2 May 2022

GEOS–Chem Wiki


GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment
through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.

The GEOS–Chem model is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the NASA Global Modeling and Assimilation Office. It is applied by research groups around the world to a wide range of atmospheric composition problems. Central management and support of the model is provided by the Atmospheric Chemistry Modeling Group at Harvard University and by the Atmospheric Composition Analysis Group at Washington University.

GEOS-Chem overview
Past releases Current release: GEOS-Chem 13.4.0 Future releases

News

For access to all past GEOS-Chem newsletters, visit this page.

Documentation

GEOS-Chem manuals and tutorials

The table below lists the various manual pages for GEOS-Chem and its related software packages.

Item Link Description
GEOS-Chem Classic Getting Started with GEOS-Chem (wiki page)
  • NOTE: Will be ported to geos-chem.readthedocs.io soon
GEOS-Chem single-node implementation
(using 1-64 computational cores)
GCHP gchp.readthedocs.io GEOS-Chem multi-node "high performance" implementation
(using 100's - 1000's of computational cores)
GEOS-Chem on the cloud cloud.geos-chem.org Instructions for running GEOS-Chem on the Amazon Web Services EC2 cloud-computing platform
WRF-GC wrf.geos-chem.org

wrfgc.readthedocs.io

GEOS-Chem coupled to the WRF weather model
HEMCO hemco.readthedocs.io The Harmonized Emissions Component
GCPy gcpy.readthedocs.io The GEOS-Chem Python Toolkit
KPP-for-GEOS-Chem kpp.readthedocs.io The Kinetic PreProcessor (KPP), customized for GEOS-Chem
GEOS-Chem Adjoint GEOS-Chem Adjoint (wiki page) The GEOS-Chem adjoint model
(NOTE: maintained separately from GEOS-Chem)
GEOS-Chem Videos youtube.com/c/geos-chem Tutorial videos for GEOS-Chem, GCHP, HEMCO, GCPy, etc., and recordings of GEOS-Chem meeting sessions
GEOS-Chem Guides GEOS-Chem Guides (wiki page) Short manuals giving a deeper dive into various GEOS-Chem topics (such as compilers, netCDF, diagnostics, etc.)

General information about GEOS-Chem

The table below lists where you can find general information about GEOS-Chem.

Item Link Description
GEOS-Chem website geos-chem.org Website that links to GEOS-Chem information and resources
Welcome Letter GEOS-Chem welcome letter for new users (wiki page) A welcome letter for new users of GEOS-Chem
GEOS-Chem Overview GEOS-Chem overview (wiki page) A page with linking to many GEOS-Chem topics.
GEOS-Chem Narrative geos-chem.seas.harvard.edu/geos-chem-narrative A narrative descrption of GEOS-Chem that you can include in scientific papers (plus instructions for citing GEOS-Chem)
GEOS-Chem New Developments geos-chem.seas.harvard.edu/geos-new-developments A list of significant GEOS-Chem updates and the developers who worked on them
GEOS-Chem Steering Committee (GCSC) geos-chem.seas.harvard.edu/geos-steering-cmte A listing of current GCSC members and minutes from GCSC meetings
GEOS-Chem Working Groups geos-chem.seas.harvard.edu/geos-working-groups A listing of GEOS-Chem Working Groups and Working Group Co-Chairs
GEOS-Chem Versions GEOS-Chem versions (wiki page) A listing of GEOS-Chem versions (with links for more information)
GEOS-Chem Species List Guide to species in GEOS-Chem (wiki page) A listing of the species used in the GEOS-Chem chemistry mechanisms
Requesting Support Submitting GEOS-Chem support requests (wiki page) Instructions for creating GEOS-Chem support requests using the Github issue trackers
Submitting code or data Submitting updates for inclusion in GEOS-Chem (wiki page) Instructions for submitting new source code or data updates to be included into GEOS-Chem.