Difference between revisions of "Main Page"

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|-valign="middle" height="80" bgcolor="#0099FF" align="center"
 
|<p><font color="#FFFFFF" size="+3">'''GEOS&#150;Chem Wiki'''</font></p>
 
|<p><font color="#FFFFFF" size="+3">'''GEOS&#150;Chem Wiki'''</font></p>
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|}
 
|}
  
{|border="0" width="1000px" bordercolor="#FFFFFF" cellspacing="0" cellpadding="5" align="center"
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{|border="0" width="1000px" bordercolor="#FFFFFF" cellspacing="0" cellpadding="5"
  
 
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|}
 
|}
  
{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center"
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{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
 
+
 
|-valign="top" align="center"
 
|-valign="top" align="center"
 
|width="334px"|'''Getting started w/ GEOS-Chem:'''
 
|width="334px"|'''Getting started w/ GEOS-Chem:'''
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|-valign="top" bgcolor="#CCFFFF" align="center"
 
|-valign="top" bgcolor="#CCFFFF" align="center"
 
|'''Current public release:'''
 
|'''Current public release:'''
|'''[[GEOS-Chem v10-01]]'''
+
|'''[[GEOS-Chem v11-01]]'''
|'''[[GEOS-Chem v10-01 benchmark history|v10-01 benchmark history]]'''
+
|'''[[GEOS-Chem v11-01 benchmark history|v11-01 benchmark history]]'''
  
 
|-valign="top" align="center"
 
|-valign="top" align="center"
 
|'''Version in development:'''
 
|'''Version in development:'''
|'''[[GEOS-Chem v11-01]]'''
+
|'''[[GEOS-Chem v11-02]]'''
|'''[[GEOS-Chem v11-01 benchmark history|v11-01 benchmark history]]'''
+
|'''[[GEOS-Chem v11-02 benchmark history|v11-02 benchmark history]]'''
  
 
|-valign="top" align="center"
 
|-valign="top" align="center"
 
|'''Version for HPC environments:'''
 
|'''Version for HPC environments:'''
 
|'''[[GEOS-Chem HP]]'''
 
|'''[[GEOS-Chem HP]]'''
|'''[[GEOS-Chem HP Dev Kit]]'''
+
|'''[[GEOS-Chem HP Status]]'''
  
 
|-valign="top" align="center"
 
|-valign="top" align="center"
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|'''[http://acmg.seas.harvard.edu/geos/geos_pub.html Refer to this page]'''
 
|'''[http://acmg.seas.harvard.edu/geos/geos_pub.html Refer to this page]'''
 
|  
 
|  
 +
 +
|-valign="top" align="center"
 +
|'''GEOS-Chem public license:'''
 +
|'''[[Media:LICENSE.txt|License agreement document]]'''
 +
|'''[[Media:AUTHORS.txt|List of developers]]'''
  
 
|}
 
|}
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<br>
 
<br>
  
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{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
  
 
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|-height="50" bgcolor="#00AAAA" align="center"
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|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
!width="500px"|<big>Introduction and overview</big>
+
!width="1000px" colspan="2"|<big>Introduction to GEOS-Chem and the International GEOS-Chem User Community</big>
!width="500px"|<big>Steering Committee and working groups</big>
+
  
 
|-valign="top"
 
|-valign="top"
| <!-- Intro and overview -->
+
|width="500px"| <!-- Intro and overview -->
* [[GEOS-Chem welcome letter for new users]]
+
*[http://acmg.seas.harvard.edu/geos/geos_overview.html Overview of GEOS-Chem and its user community]
* [[GEOS-Chem basics]]
+
**[http://acmg.seas.harvard.edu/geos/geos_people.html GEOS-Chem People & Projects]
* [[Features of the GEOS-Chem public wiki]]
+
** [[GEOS-Chem Support Team]]
* [[Customizing your GEOS-Chem Wiki Settings]]
+
** [[GEOS-Chem newsletters]]
* [http://acmg.seas.harvard.edu/geos/geos_overview.html GEOS-Chem Overview]
+
** [http://acmg.seas.harvard.edu/geos/geos_new_developments.html Recommendations for offering co-authorships to GEOS-Chem developers]
* [http://acmg.seas.harvard.edu/geos/geos_people.html GEOS-Chem People & Projects]
+
** [[GEOS-Chem_versions_under_development|GEOS-Chem code development history]]
* [http://acmg.seas.harvard.edu/geos/word_pdf_docs/resources_guidelines_tips.pdf User Resources, Code Development Guidelines, and Debugging Tips]
+
** [http://acmg.seas.harvard.edu/geos/geos_chem_narrative.html Narrative description of GEOS-Chem]
* [[GEOS-Chem Support Team]]
+
* [[GEOS-Chem basics|Basic information about getting set up with GEOS-Chem]]
* [[GEOS-Chem newsletters]]
+
** [[GEOS-Chem welcome letter for new users]]
* [http://acmg.seas.harvard.edu/geos/geos_search.html GEOS-Chem Search Engines]
+
** [[Features of the GEOS-Chem public wiki]]
* [http://acmg.seas.harvard.edu/geos/geos_new_developments.html Recommendations for offering co-authorships to GEOS-Chem developers]
+
** [[Customizing your GEOS-Chem Wiki Settings]]
* [http://acmg.seas.harvard.edu/geos/geos_dev_history.html GEOS-Chem code development history]
+
** [http://acmg.seas.harvard.edu/geos/geos_search.html GEOS-Chem Search Engines]
| <!-- Steering committee etc -->
+
|width="500px"| <!-- Steering committee etc -->
 
* [http://acmg.seas.harvard.edu/geos/geos_steering_cmte.html GEOS-Chem Steering Committee]
 
* [http://acmg.seas.harvard.edu/geos/geos_steering_cmte.html GEOS-Chem Steering Committee]
 
** [[GEOS-Chem model development priorities]]
 
** [[GEOS-Chem model development priorities]]
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** [[Aerosols Working Group]]
 
** [[Aerosols Working Group]]
 
** [[Carbon Cycle Working Group]]
 
** [[Carbon Cycle Working Group]]
** [[Chemistry-Climate Working Group]]
+
** [[Chemistry-Ecosystems-Climate Working Group]]
 
** [[GEOS-Chem High Performance Working Group]]
 
** [[GEOS-Chem High Performance Working Group]]
 
** [[Hg and POPs Working Group]]
 
** [[Hg and POPs Working Group]]
** [[Organics Working Group]]
+
** [[Chemistry Issues|Chemistry Working Group]]
** [[Chemistry Issues|Oxidants and Chemistry Working Group]]
+
** [[Emissions and Deposition Working Group]]
** [[Nested Model Working Group]]
+
** [[Sources and Sinks Working Group|Sources and Surface Uptake Working Group]]
+
 
** [[Transport Working Group]]
 
** [[Transport Working Group]]
 +
*[[GEOS-Chem Nested Model]]
  
 
|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
!width="500px"|<big>Getting started with GEOS-Chem</big>
+
!width="1000px" colspan="2"|<big>Getting started with GEOS-Chem</big>
!width="500px"|<big>General technical information</big>
+
  
 
|-valign="top"
 
|-valign="top"
 
|
 
|
 +
* [[GEOS-Chem basics]] (e.g. tutorials, user guides, etc.)
 
* [[Frequently asked questions about GEOS-Chem]]
 
* [[Frequently asked questions about GEOS-Chem]]
 
* [[Minimum system requirements for GEOS-Chem]]
 
* [[Minimum system requirements for GEOS-Chem]]
* [[GEOS-Chem supported platforms and compilers]]
 
 
* [[Downloading GEOS-Chem source code and data]]
 
* [[Downloading GEOS-Chem source code and data]]
 +
* [[GEOS-Chem performance]]
 
* [[Creating GEOS-Chem run directories]]
 
* [[Creating GEOS-Chem run directories]]
* [[GEOS-Chem basics]] (e.g. tutorials, user guides, etc.)
+
* [[GEOS-Chem coding style guide]]
* [http://acmg.seas.harvard.edu/geos/doc/man/appendix_7.html GEOS-Chem Programming Style Guide]
+
* GEOS-Chem [[GEOS-Chem horizontal grids|horizontal grids]] and [[GEOS-Chem vertical grids|vertical grids]]
 
|
 
|
 
* [[Initial conditions for GEOS-Chem]]
 
* [[Initial conditions for GEOS-Chem]]
 
* [[Centralized chemistry time step]]
 
* [[Centralized chemistry time step]]
 
* [[GEOS-Chem coding and debugging#GEOS-Chem debugging tips|Tips on how to debug GEOS-Chem effectively]]
 
* [[GEOS-Chem coding and debugging#GEOS-Chem debugging tips|Tips on how to debug GEOS-Chem effectively]]
* [[Reporting GEOS-Chem bugs]]
 
* [[Debugging with the GEOS-Chem unit tester]]
 
 
* [[Parallelizing GEOS-Chem]] with the OpenMP directives
 
* [[Parallelizing GEOS-Chem]] with the OpenMP directives
 
* [[Common GEOS-Chem error messages]]
 
* [[Common GEOS-Chem error messages]]
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<br>
 
<br>
  
{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5" align="center"
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{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
  
 
|-height="50" bgcolor="#00AAAA" align="center"
 
|-height="50" bgcolor="#00AAAA" align="center"
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|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
 
!width="500px"|<big>Coding</big>
 
!width="500px"|<big>Coding</big>
!width="500px"|<big>Diagnostics</big>
+
!width="500px"|<big>Meteorological Fields</big>
  
 
|-valign="top"
 
|-valign="top"
 
| <!-- Coding -->
 
| <!-- Coding -->
* [[GEOS-Chem versions under development]]
+
*Software development
* [[Bugs and fixes|List of GEOS-Chem bugs and in which version they were resolved]]
+
**[[GEOS-Chem versions under development]]
* [[Currently unresolved issues in GEOS-Chem]]
+
**[[Version control with Git]]
* [[Common GEOS-Chem error messages]]
+
*[[GEOS-Chem coding and debugging]]
* [[Known issues caused by compiler bugs|Known GEOS-Chem issues caused by compiler bugs]]
+
**[[GEOS-Chem coding style guide]]
* [[GEOS-Chem performance]]
+
**[[Bugs and fixes|List of GEOS-Chem bugs and in which version they were resolved]]
* [[Machine issues and portability]]
+
**[[Currently unresolved issues in GEOS-Chem]]
* [[Passing array arguments efficiently in GEOS-Chem]]
+
**[[Known issues caused by compiler bugs|Known GEOS-Chem issues caused by compiler bugs]]
* [[Floating point math issues]]
+
**[[Machine issues & portability|Machine issues and portability]]
* [[Version control with Git]]
+
**[[Debugging with the GEOS-Chem unit tester]]
| <!-- Diagnostics -->
+
**[[Performing Difference Tests with GEOS-Chem]]
* [[List of diagnostics for v11-01|List of current GEOS-Chem diagnostics]]
+
**[[Common GEOS-Chem error messages]]
* [[Diagnostic time step]]
+
**[[GEOS-Chem_coding_and_debugging#Reporting_GEOS-Chem_bugs_to_the_GEOS-Chem_Support_Team|Reporting GEOS-Chem bugs to the GCST]]
* [[Mass Flux (ND24/25/26)]]
+
*[[GEOS-Chem performance]]
* [[Additional diagnostics]]
+
**[[Profiling GEOS-Chem]]
 +
**[[Passing array arguments efficiently in GEOS-Chem]]
 +
**[[Floating point math issues]]
 +
**[[GEOS-Chem performance#7-day time tests|Results from 7-day timing tests]]
 +
| <!-- Met fields -->
 +
*[[Overview of GMAO met data products]]
 +
**[[Version history of GMAO met data products]]
 +
**[[Available met data for nested grid simulations]]
 +
**[[List of reprocessed met fields]]
 +
*[[MERRA-2|GMAO MERRA-2]]
 +
**[[List of MERRA-2 met fields|List of MERRA-2 met fields used by GEOS-Chem]]
 +
**[[MERRA-2 implementation details|Implementing MERRA-2 into GEOS-Chem]]
 +
*[[GEOS-FP|GMAO GEOS-FP]]
 +
**[[List of GEOS-FP met fields|List of GEOS-FP met fields used by GEOS-Chem]]
 +
**[[GEOS-FP implementation details|Implementing GEOS-FP into GEOS-Chem]]
 +
*[[MERRA|GMAO MERRA "reanalysis"]]
 +
**[[List of MERRA met fields|List of MERRA met fields used by GEOS-Chem]]
 +
**[[MERRA implementation details|Implementing MERRA into GEOS-Chem]]
 +
*[[GEOS-5|GMAO GEOS-5.2.0]]
 +
**[[List of GEOS-5 met fields|List of GEOS-5.2.0 met fields used by GEOS-Chem]]
 +
**[[GEOS-5 issues|Issues with GEOS-5.2.0 met data]]
  
 
|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
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|-valign="top"
 
|-valign="top"
 
|<!-- Emissions -->
 
|<!-- Emissions -->
* [[HEMCO|HEMCO emissions component]]
+
*[[HEMCO|HEMCO emissions component]]
* [[HEMCO data directories]]
+
**[[HEMCO data directories]]
* [[Aerosol emissions]]
+
**[[The HEMCO User's Guide]]
* [[Aircraft emissions]]
+
**[[Implementation of HEMCO in GEOS-Chem]]
* [[Anthropogenic emissions]]
+
*Emissions categories
* [[Scale factors for anthropogenic emissions]]
+
**[[Aerosol emissions]]
* [[Biofuel emissions]]
+
**[[Aircraft emissions]]
* [[Biogenic emissions]]
+
**[[Anthropogenic emissions]]
* [[Biomass burning emissions]]
+
**[[Scale factors for anthropogenic emissions]]
* [[Lightning NOx emissions]]
+
**[[Biofuel emissions]]
* [[Ship emissions]]
+
**[[Biogenic emissions]]
* [[Soil NOx emissions]]
+
**[[Biomass burning emissions]]
* [[Volcanic SO2 emissions from Aerocom|Volcanic emissions]]
+
**[[Lightning NOx emissions]]
* [[Historical and Future Emissions|Historical and future emissions]]
+
**[[Ship emissions]]
 +
**[[Soil NOx emissions]]
 +
**[[Volcanic SO2 emissions from Aerocom|Volcanic emissions]]
 +
**[[Historical and Future Emissions|Historical and future emissions]]
 
|<!-- Chemistry -->
 
|<!-- Chemistry -->
* [[GEOS-Chem chemistry mechanisms]]
+
*[[GEOS-Chem chemistry mechanisms]]
* [[GEOS-Chem chemistry mechanisms#Stratospheric chemistry|Stratopsheric chemistry options]]
+
**[[GEOS-Chem chemistry mechanisms#Stratospheric chemistry|Stratopsheric chemistry options]]
* [[GEOS-Chem chemistry mechanisms#Specialty simulations|Specialty simulations (aka "offline simulations")]]
+
**[[GEOS-Chem chemistry mechanisms#Specialty simulations|Specialty simulations (aka "offline simulations")]]
* Other resources
+
**[[Photolysis mechanism|Photolysis mechanisms used in GEOS-Chem]]
** [[Chemistry Issues]]
+
*[[Species in GEOS-Chem]]
** [[Process Analysis Diagnostics]]
+
**[[GEOS-Chem species database]]
** [[Photolysis mechanism|Photolysis mechanisms used in GEOS-Chem]]
+
**[[Physical properties of GEOS-Chem species]]  
** [[DSMACC chemical box model]]
+
**[[GEOS-Chem species units]]
** [[Isoprene|List of recent papers about isoprene]]
+
**[[Species indexing in GEOS-Chem]]
** [[Linking GEOS-Chem to CMAQ]]
+
*Other resources
** [[Coupling GEOS-Chem with RRTMG]]  
+
**[[FlexChem]]
*[[GEOS-Chem species database]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
+
**[[Chemistry Issues]]
*[[Physical properties of GEOS-Chem species]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
+
**[[Process Analysis Diagnostics]]
*[[Species_indexing_in_GEOS-Chem|Species and tracer indexing in GEOS-Chem]] <span style="color:red">'''(NEW in [[GEOS-Chem v11-01|v11-01]]!)'''</span>
+
**[[Linking GEOS-Chem to CMAQ]]
 +
**[[Coupling GEOS-Chem with RRTMG]]
 +
**[[DSMACC chemical box model]]
  
 
|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
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|-valign="top"
 
|-valign="top"
 
| <!-- Dynamics -->
 
| <!-- Dynamics -->
* [[Advection scheme TPCORE]]
+
*[[Advection scheme TPCORE]]
* [[Boundary layer mixing]]
+
*[[Boundary layer mixing]]
* [[Cloud convection]]
+
*[[Cloud convection]]
* [[Dynamic tropopause]]
+
*[[Dynamic tropopause]]
 
| <!-- Deposition -->
 
| <!-- Deposition -->
* [[Dry deposition]]
+
*[[Dry deposition]]
 
**[[Leaf area indices in GEOS-Chem]]
 
**[[Leaf area indices in GEOS-Chem]]
* [[Wet deposition]]
+
**[[Olson land map]]
 +
*[[Wet deposition]]
  
 
|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
 
!width="500px"|<big>Aerosols</big>
 
!width="500px"|<big>Aerosols</big>
!width="500px"|<big>Met fields</big>
+
!width="500px"|<big>Benchmarking and Evaluation</big>
  
 
|-valign="top"
 
|-valign="top"
 
| <!-- Aerosols -->
 
| <!-- Aerosols -->
* [[Aerosols overview: projects and developments|Aerosols working group]]
+
*[[Aerosol-only simulation]]
* [[Aerosol-only simulation]]
+
*[[Aerosol optical properties]]
* [[Aerosol optical properties]]
+
*[[Aerosol thermodynamical equilibrium]]
* [[Aerosol thermodynamical equilibrium]]
+
*[[Carbonaceous aerosols]]
* [[Carbonaceous aerosols]]
+
*[[Mineral dust aerosols]]
* [[Mineral dust aerosols]]
+
*[[Secondary organic aerosols]]
* [[Secondary organic aerosols]]
+
*[[Sea salt aerosols]]
* [[Sea salt aerosols]]
+
*[[Sulfate aerosols]]
* [[Sulfate aerosols]]
+
*Aerosol Microphysics
* Aerosol Microphysics
+
**[[APM aerosol microphysics|APM]]
** [[APM aerosol microphysics|APM]]
+
**[[TOMAS aerosol microphysics|TOMAS]]
** [[TOMAS aerosol microphysics|TOMAS]]
+
| <!-- Benchmarks -->
| <!-- Met fields -->
+
*[[GEOS-Chem_benchmarking|General info about GEOS-Chem benchmark simulations]]
* [[GCAP]]
+
**[[GEOS-Chem_versions_under_development|List of GEOS-Chem 1-year benchmark simulations]]
** [[List of GCAP met fields|List of GCAP met fields used by GEOS-Chem]]
+
**[[Mean OH concentration]]
* [[Overview of GMAO met data products]]
+
**[[GEOS-Chem v11-01 benchmark history]]
* [[Version history of GMAO met data products]]
+
**[[GEOS-Chem v10-01 benchmark history]]
* [[GMAO GEOS-4]]
+
**[[GEOS-Chem v9-02 benchmark history]]
** [[List of GEOS-4 met fields|List of GEOS-4 met fields used by GEOS-Chem]]
+
**[ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1yr_benchmarks/ FTP site with output from 1-year GEOS-Chem benchmark simulations]
* [[GEOS-5|GMAO GEOS-5.2.0]]
+
*Other resources
** [[List of GEOS-5 met fields|List of GEOS-5.2.0 met fields used by GEOS-Chem]]
+
**[[GEOS-Chem participation in community intercomparisons]]
** [[GEOS-5 issues|Issues with GEOS-5.2.0 met data]]
+
**[[Satellite_Specifications_Table|Satellite Instrument Specifications Table]]
* [[MERRA|GMAO MERRA "reanalysis"]]
+
** [[List of MERRA met fields|List of MERRA met fields used by GEOS-Chem]]
+
** [[MERRA implementation details|Implementing MERRA into GEOS-Chem]]
+
* [[GEOS-FP|GMAO GEOS-FP]]
+
** [[List of GEOS-FP met fields|List of GEOS-FP met fields used by GEOS-Chem]]
+
** [[GEOS-FP implementation details|Implementing GEOS-FP into GEOS-Chem]]
+
* [[MERRA-2|GMAO MERRA-2]]
+
** [[List of MERRA-2 met fields|List of MERRA-2 met fields used by GEOS-Chem]]
+
** [[MERRA-2 implementation details|Implementing MERRA-2 into GEOS-Chem]]
+
* [[GEOS-Chem vertical grids]]
+
* [[Available met data for nested grid simulations]]
+
* [[List of reprocessed met fields]]
+
  
 
|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
 
!width="500px"|<big>Nested grid simulations</big>
 
!width="500px"|<big>Nested grid simulations</big>
!width="500px"|<big>Earth System Modeling Framework</big>
+
!width="500px"|<big>Diagnostics</big>
  
 
|-valign="top"
 
|-valign="top"
 
| <!-- Nested grid -->
 
| <!-- Nested grid -->
* [[GEOS-Chem nested grid simulations]]
+
*[[GEOS-Chem nested grid simulations]]
* [[Setting up GEOS-Chem nested grid simulations]]
+
*[[Setting up GEOS-Chem nested grid simulations]]
* [[Available met data for nested grid simulations]]
+
*[[Available met data for nested grid simulations]]
* [http://acmg.seas.harvard.edu/geos/wiki_docs/nested_grids/geos_data_downloads.pdf Protocol for nested-grid data downloads]
+
*[http://acmg.seas.harvard.edu/geos/wiki_docs/nested_grids/geos_data_downloads.pdf Protocol for nested-grid data downloads]
* [[Steps to setup new nested domains]]
+
*[[Steps to setup new nested domains]]
* [[GEOS-Chem nested model publications]]
+
*[[GEOS-Chem nested model publications]]
| <!-- ESMF -->
+
| <!-- Diagnostics -->
* [[Installing ESMF and other required libraries]]
+
*[[List of diagnostics for v11-01|List of current GEOS-Chem diagnostics]]
* [[Code development with the Earth System Model Framework]]
+
*[[The HEMCO User's Guide#Diagnostics|Archiving diagnostics from HEMCO to netCDF files]]
* [[Automatic documentation with protex|Generating automatic LaTeX documentation with protex]]
+
*[[Diagnostic time step]]
** [http://frodo.elon.edu/tutorial/tutorial/tutorial.html Web-based LaTeX tutorial]
+
*[[Mass Flux (ND24/25/26)]]
 +
*[[Additional diagnostics]]
  
 
|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
!width="500px"|<big>Benchmarking and Evaluation</big>
 
 
!width="500px"|<big>Related projects</big>
 
!width="500px"|<big>Related projects</big>
 +
!width="500px"|<big>Other resources</big>
  
 
|-valign="top"
 
|-valign="top"
| <!-- Benchmarks -->
+
|<!-- Projects -->
* [http://acmg.seas.harvard.edu/geos/geos_benchmark.html General info about GEOS-Chem benchmark simulations]
+
*[[GEOS-Chem HP]]
* [http://acmg.seas.harvard.edu/geos/geos_1yr_plots.html List of GEOS-Chem 1-year benchmark simulations]
+
*[[GEOS-Chem Adjoint]]
* [[Mean OH lifetime in GEOS-Chem]]
+
*[[GEOS-Chem Near-Real-Time Simulations]]
* [ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1yr_benchmarks/ FTP site with output from 1-year GEOS-Chem benchmark simulations]
+
*[[FlexAOD]]
* [[GEOS-Chem participation in community intercomparisons]]
+
|<!-- Other resources -->
* [[Satellite_Specifications_Table|Satellite Instrument Specifications Table]]
+
*[http://www.researcherid.com/rid/C-5595-2014 GEOS-Chem publications page on ResearcherID]
| <!-- Projects -->
+
*[http://acmg.seas.harvard.edu/geos/meetings/2017/index.html IGC8 Meeting (May 2017) web site]
* [[GEOS-Chem HP]]
+
*[http://acmg.seas.harvard.edu/geos/meetings/2015/presentationsposters.html Presentations from the IGC7 meeting (2015)]
* [[GEOS-Chem Adjoint]]
+
*[http://acmg.seas.harvard.edu/geos/meetings/2013/presentations.html Presentations from the IGC6 meeting (2013)]
* [[GEOS-Chem Near-Real-Time Simulations]]
+
* [[FlexAOD]]
+
 
|}
 
|}
  
 
<br>
 
<br>
  
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{|border="1" width="1000px" bordercolor="#000000" cellspacing="0" cellpadding="5"
  
 
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|-valign="top"
 
|-valign="top"
 
| <!-- IDL -->
 
| <!-- IDL -->
* [http://www.exelisvis.com/ Exelis Visual Information Solutions (vendor)]
+
*[http://www.harrisgeospatial.com/docs/using_idl_home.html Using IDL (Harris Geospatial Solutions site)]
* [http://www.exelisvis.com/docs/routines-1.html Online IDL Reference Manual @ Exelis website]
+
*[http://idlastro.gsfc.nasa.gov/idl_html_help/Structures.html Structures in IDL]
* [http://idlastro.gsfc.nasa.gov/idl_html_help/Structures.html Structures in IDL]
+
*[http://idlastro.gsfc.nasa.gov/idl_html_help/Pointers.html Pointers in IDL]
* [http://idlastro.gsfc.nasa.gov/idl_html_help/Pointers.html Pointers in IDL]
+
*[http://idlastro.gsfc.nasa.gov/idl_html_help/Overview_of_Mathematics_in_IDL.html Overview of Mathematics in IDL]
* [http://idlastro.gsfc.nasa.gov/idl_html_help/Overview_of_Mathematics_in_IDL.html Overview of Mathematics in IDL]
+
*[http://idlastro.gsfc.nasa.gov/homepage.html IDL Astronomy User's Library]
* [http://www.dfanning.com/ Coyote's Guide to IDL Programming (David Fanning's Web Site)] - Lots of tips on how to accomplish programming tasks
+
*[http://fermi.jhuapl.edu/s1r/idl/idl.html JHU/APL/S1R IDL routines page]
* [http://www.mpimet.mpg.de/en/misc/software/idl IDL Page at Max Planck Institute for Meteorology]
+
*[http://cow.physics.wisc.edu/~craigm/idl/idl.html Craig Markwardt's IDL library]
* [http://www.mpimet.mpg.de/en/misc/software/idl/doc/mgs_script.pdf Martin Schultz's IDL Tutorial (PDF Format)]  
+
*[[Reading binary files in IDL]]
* [http://idlastro.gsfc.nasa.gov/homepage.html IDL Astronomy User's Library]
+
* [http://fermi.jhuapl.edu/s1r/idl/idl.html JHU/APL/S1R IDL routines page]
+
* [http://cow.physics.wisc.edu/~craigm/idl/idl.html Craig Markwardt's IDL library]
+
* [http://cimss.ssec.wisc.edu/~gumley/doc/idltips.pdf The Underground Guide to IDL by Liam Gumley (PDF)]
+
* [[Reading binary files in IDL]]
+
 
| <!-- GAMAP -->
 
| <!-- GAMAP -->
* [http://acmg.seas.harvard.edu/gamap/ GAMAP web page]
+
*[http://acmg.seas.harvard.edu/gamap/ GAMAP web page]
* [http://acmg.seas.harvard.edu/gamap/doc/ GAMAP on-line users' guide]
+
*[http://acmg.seas.harvard.edu/gamap/doc/ GAMAP on-line users' guide]
* [[GAMAP bugs and fixes]]
+
*[[GAMAP bugs and fixes]]
* [[GAMAP tips and tricks]]
+
*[[GAMAP tips and tricks]]
 
**[[General GAMAP usage]]
 
**[[General GAMAP usage]]
 
**[[TVMAP cheat sheet]]
 
**[[TVMAP cheat sheet]]
Line 311: Line 319:
 
***[http://acmg.seas.harvard.edu/gamap/doc/timeseries_brief_tutorial.pdf Working with timeseries output in GAMAP]
 
***[http://acmg.seas.harvard.edu/gamap/doc/timeseries_brief_tutorial.pdf Working with timeseries output in GAMAP]
 
**[[Color and graphics with GAMAP]]
 
**[[Color and graphics with GAMAP]]
*** [http://acmg.seas.harvard.edu/geos/wiki_docs/gamap/gamap_color_table_file.pdf Loading Color Tables in GAMAP v2.12]
+
***[http://acmg.seas.harvard.edu/geos/wiki_docs/gamap/gamap_color_table_file.pdf Loading Color Tables in GAMAP v2.12]
 
*** [http://acmg.seas.harvard.edu/forum_files/cdh_ColorInIDL.pdf Working with color in IDL by Chris Holmes]
 
*** [http://acmg.seas.harvard.edu/forum_files/cdh_ColorInIDL.pdf Working with color in IDL by Chris Holmes]
 
**[[Regridding with GAMAP]]
 
**[[Regridding with GAMAP]]
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|-valign="top"
 
|-valign="top"
 
|<!-- Fortran -->
 
|<!-- Fortran -->
* [[Intel Fortran Compiler]]
+
*[[Intel Fortran Compiler]]
** [http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v11.pdf Version 11.1]
+
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v11.pdf Version 11.1]
** [http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v12.pdf Version 12.1]
+
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/main_for_lin_v12.pdf Version 12.1]
** [https://nf.nci.org.au/facilities/software/intel-ct/13.2.146/Documentation/en_US/compiler_f/main_for/index.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747 Version XE 13.1]
+
**[https://nf.nci.org.au/facilities/software/intel-ct/13.2.146/Documentation/en_US/compiler_f/main_for/index.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747.htm#GUID-81DC012F-20D6-46B1-A524-BFAC4B6F7747 Version XE 13.1]
** [https://software.intel.com/en-us/compiler_15.0_ug_f Version 15.0]
+
**[https://software.intel.com/en-us/compiler_15.0_ug_f Version 15.0]
* [[PGI Fortran compiler]]
+
*[[PGI Fortran compiler]]
 
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgiug.pdf User Guide]
 
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgiug.pdf User Guide]
 
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgifortref.pdf Reference Guide]
 
**[http://acmg.seas.harvard.edu/geos/wiki_docs/compilers/pgifortref.pdf Reference Guide]
* [[GNU Fortran compiler]]
+
*[[GNU Fortran compiler]]
* [http://www-01.ibm.com/software/awdtools/fortran/xlfortran/ IBM XL Fortran]
+
*[[GEOS-Chem basics#Fortran resources|Fortran tutorials]]
* [http://docs.sun.com/app/docs/doc/819-3686 Sun Studio 11 Fortran Compiler]
+
* [http://www.liv.ac.uk/HPC/HTMLF90Course/HTMLF90CourseSlides.html Modular Programming w/ Fortran 90 (U. Liverpool)]
+
* [http://www.liv.ac.uk/HPC/F90page.html Other University of Liverpool F90 tutorials and courses]
+
* [http://sunsite.unc.edu/pub/languages/fortran/index.html User Notes on FORTRAN Programming]
+
* [http://www.nsc.liu.se/~boein/f77to90/f77to90.html Fortran 90 for the FORTRAN 77 Programmer]
+
* [http://www.kcl.ac.uk/kis/support/cc/fortran/f90home.html#1.0 Fortran 90 Home Page at King's College, London]
+
* [http://www.cs.rpi.edu/~szymansk/oof90.html Object Oriented Fortran 90 Programming]
+
 
|<!-- Perl -->
 
|<!-- Perl -->
* [http://www.perl.com Perl.com]
+
*[http://www.perl.com Perl.com]
* [http://www.perl.org/books/beginning-perl/ ''Beginning Perl'' by Simon Cozens (free online book)]
+
*[http://www.perl.org/books/beginning-perl/ ''Beginning Perl'' by Simon Cozens (free online book)]
* [http://backpan.perl.org/authors/id/Q/QU/QUONG/perlin20.html Perl in 20 pages]
+
*[http://backpan.perl.org/authors/id/Q/QU/QUONG/perlin20.html Perl in 20 pages]
* [http://www.enginsite.com/Library-Robert%27s-Perl-Tutorial.htm MediaWiki User's Guide]
+
*[http://www.enginsite.com/Library-Robert%27s-Perl-Tutorial.htm MediaWiki User's Guide]
* [http://www.cpan.org/ Comprehensive Perl Archive Network (CPAN.org)]
+
*[http://www.cpan.org/ Comprehensive Perl Archive Network (CPAN.org)]
  
 
|-valign="top" bgcolor="#CCCCCC"
 
|-valign="top" bgcolor="#CCCCCC"
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|-valign="top"
 
|-valign="top"
|<!-- MCL -->
+
|<!-- NCL -->
* [http://www.ncl.ucar.edu/ NCL main page]
+
*[http://www.ncl.ucar.edu/ NCL main page]
* [http://www.ncl.ucar.edu/Applications/ NCL applications]
+
*[http://www.ncl.ucar.edu/Applications/ NCL applications]
* [http://www.ncl.ucar.edu/Document/ NCL documentation]
+
*[http://www.ncl.ucar.edu/Document/ NCL documentation]
* [http://www.ncl.ucar.edu/Support/email_lists.shtml Sign up for NCL-Talk email list]
+
*[http://www.ncl.ucar.edu/Support/email_lists.shtml Sign up for NCL-Talk email list]
* [[NCL_tools_for_GEOS-Chem|NCL4GC: NCL tools for GEOS-Chem]]
+
*[[NCL_tools_for_GEOS-Chem|NCL4GC: NCL tools for GEOS-Chem]]
 
|<!-- Wiki doc -->
 
|<!-- Wiki doc -->
* [[Sandbox]]
+
*[[Sandbox]]
* [http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
+
*[http://www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
* [http://meta.wikimedia.org/wiki/Help:Contents MediaWiki User's Guide]
+
*[http://meta.wikimedia.org/wiki/Help:Contents MediaWiki User's Guide]
* [http://meta.wikimedia.org/wiki/Help:Wikitext Examples of Wiki markup text]
+
*[http://meta.wikimedia.org/wiki/Help:Wikitext Examples of Wiki markup text]
* [http://meta.wikimedia.org/wiki/Help:Reference_card One-page editing reference card]
+
*[http://meta.wikimedia.org/wiki/Help:Reference_card One-page editing reference card]
* [http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration Settings list]
+
*[http://www.mediawiki.org/wiki/Manual:Configuration_settings Configuration Settings list]
* [http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
+
*[http://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
 
|}
 
|}

Revision as of 17:47, 21 September 2017

GEOS–Chem Wiki

GEOS-Chem Community Mission: to advance understanding of human and natural influences on the environment
through a comprehensive, state-of-the-science, readily accessible global model of atmospheric composition.

The GEOS–Chem model is a global 3-D model of atmospheric composition driven by assimilated meteorological observations from the Goddard Earth Observing System (GEOS) of the NASA Global Modeling and Assimilation Office. It is applied by research groups around the world to a wide range of atmospheric composition problems, Central management and support of the model is provided by the Atmospheric Chemistry Modeling Group at Harvard University.

This wiki is meant to facilitate communication between GEOS-Chem users and developers. If this is your first time here, check out the features page. If you would like to contribute to the wiki, please register as a user by clicking create account at the top right corner of this page.

New information is continually being added to the wiki, so please check back here often, or even better, subscribe to the recent changes' RSS feed: you will not miss a discussion!

Getting started w/ GEOS-Chem: Welcome letter for new users GEOS-Chem basics
Current public release: GEOS-Chem v11-01 v11-01 benchmark history
Version in development: GEOS-Chem v11-02 v11-02 benchmark history
Version for HPC environments: GEOS-Chem HP GEOS-Chem HP Status
List of publications: Refer to this page
GEOS-Chem public license: License agreement document List of developers


General information about GEOS-Chem

Introduction to GEOS-Chem and the International GEOS-Chem User Community
Getting started with GEOS-Chem


GEOS-Chem Code Developers' Forums

Coding Meteorological Fields
Emissions Chemistry
Dynamics Deposition
Aerosols Benchmarking and Evaluation
Nested grid simulations Diagnostics
Related projects Other resources


Reference Section

IDL GAMAP
Fortran Perl
R Python
NCAR Command Language (NCL) Wiki documentation