Difference between revisions of "History collections for mercury and POPs"
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| − | '''''[[History collections for dry deposition|Previous]] | [[History collections for met fields and related quantities|Next]] | [[Guide to GEOS-Chem History | + | '''''[[History collections for dry deposition|Previous]] | [[History collections for met fields and related quantities|Next]] | [[Guide to GEOS-Chem History diagnostics]]''''' |
Revision as of 22:34, 8 December 2020
Previous | Next | Guide to GEOS-Chem History diagnostics
- Overview of History diagnostics
- Legend for History diagnostics
- Collections for History diagnostics
- History collections for advection and mixing
- History collections for aerosols
- History collections for budgets
- History collections for chemistry and photolysis
- History collections for convection and wet deposition
- History collections for dry deposition
- History collections for mercury and POPs
- History collections for met fields and related quantities
- History collections for methane
- History collections for species concentrations
- History collections for TransportTracers
- Replicating the behavior of the prior timeseries diagnostics
- Adding new History diagnostics
Contents
The MercuryChem collection
NOTE: This collection has not yet been validated and should be considered experimental.
The 'MercuryChem collection contains concentrations and prod/loss diagnostic outputs for the Hg specialty simulationl
Here is a sample definition section for the MercuryEmis collection.
- If this collection is not already present in the HISTORY.rc file in the GEOS-Chem run directory for your selected simulation, you can copy and paste this into your HISTORY.rc file and edit accordingly.
- To prevent an individual field from being included in the diagnostic output, place a comment character # in front of the field name.
- Please see our Legend for History diagnostics page for more information about each of the collection tags.
MercuryChem.template: '%y4%m2%d2_%h2%n2z.nc4',
MercuryChem.format: 'CFIO',
MercuryChem.frequency: 00000000 040000
MercuryChem.duration: 00000000 040000
MercuryChem.mode: 'time-averaged'
MercuryChem.fields: 'ConcBr ', 'GIGCchem',
'ConcBrO ', 'GIGCchem',
'LossHg2bySeaSalt ', 'GIGCchem',
'LossRateHg2bySeaSalt ', 'GIGCchem',
'PolarConcBr ', 'GIGCchem',
'PolarConcBrO ', 'GIGCchem',
'PolarConcO3 ', 'GIGCchem',
'ProdHg2fromBr ', 'GIGCchem',
'ProdHg2fromBrY ', 'GIGCchem',
'ProdHg2fromClY ', 'GIGCchem',
'ProdHg2fromHg0 ', 'GIGCchem',
'ProdHg2fromHgBrPlusBr2 ', 'GIGCchem',
'ProdHg2fromHgBrPlusBrBrO ', 'GIGCchem',
'ProdHg2fromHgBrPlusBrClO ', 'GIGCchem',
'ProdHg2fromHgBrPlusBrHO2 ', 'GIGCchem',
'ProdHg2fromHgBrPlusBrNO2 ', 'GIGCchem',
'ProdHg2fromHgBrPlusBrOH ', 'GIGCchem',
'ProdHg2fromO3 ', 'GIGCchem',
'ProdHg2fromOH ', 'GIGCchem',
'ParticulateBoundHg ', 'GIGCchem',
'ReactiveGaseousHg ', 'GIGCchem',
::
The table below describes the diagnostic quantities belonging to the MercuryChem collection:
| Diagnostic name | Description | Units | Wildcards | Simulations | Notes | Bpch equiv. |
|---|---|---|---|---|---|---|
| ConcBr | Br concentration | molec/cm3 |
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| ConcBrO | BrO concentration | molec/cm3 |
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| LossHg2bySeaSalt | Loss of Hg2 by reaction with sea salt aerosols | kg/s |
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| LossRateHg2bySeaSalt | Rate of loss of Hg2 by reaction with sea salt aerosols | 1/s |
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| PolarConcBr | Br concentration in polar regions | pptv |
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| PolarConcBrO | BrO concentration in polar regions | molec/cm3 |
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| PolarConcO3 | O3 concentration in polar regions | molec/cm3 |
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| ProdHg2fromBr | Chemical production of Hg2 from Br | kg/s |
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| ProdHg2fromBrY | Chemical production of Hg2 from reaction with BrY | kg/s |
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| ProdHg2fromClY | Chemical production of Hg2 from reaction with ClY | kg/s |
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| ProdHg2fromHg0 | Chemical production of Hg2 from reaction with Hg0 | kg/s |
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| ProdHg2fromHgBrPlusBr2 | Chemical production of Hg2 from reaction with HgBr + Br2 | kg/s |
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| ProdHg2fromHgBrPlusBrBrO | Chemical production of Hg2 from reaction with HgBr + BrBrO | kg/s |
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| ProdHg2fromHgBrPlusBrClO | Chemical production of Hg2 from reaction with HgBr + BrClO | kg/s |
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| ProdHg2fromHgBrPlusBrHO2 | Chemical production of Hg2 from reaction with HgBr + BrHO2 | kg/s |
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| ProdHg2fromHgBrPlusBrNO2 | Chemical production of Hg2 from reaction with HgBr + BrNO2 | kg/s |
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| ProdHg2fromHgBrPlusBrOH | Chemical production of Hg2 from reaction with HgBr + BrOH | kg/s |
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| ProdHg2fromO3 | Chemical production of Hg2 from reaction with O3 | kg/s |
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| ProdHg2fromOH | Chemical production of Hg2 from reaction with OH | kg/s |
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| ParticulateBoundHg | Particulate bound mercury (PBM) | pptv |
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| ReactiveGaseousHg | Reactive gaseous mercury | pptv |
|
The MercuryEmis Collection
NOTE: This collection has not yet been validated and should be considered experimental.
The MercuryEmis collection contains emission diagnostics for the Hg specialty simulation.
Here is a sample definition section for the MercuryEmis collection.
- If this collection is not already present in the HISTORY.rc file in the GEOS-Chem run directory for your selected simulation, you can copy and paste this into your HISTORY.rc file and edit accordingly.
- To prevent an individual field from being included in the diagnostic output, place a comment character # in front of the field name.
- Please see our Legend for History diagnostics page for more information about each of the collection tags.
MercuryEmis.template: '%y4%m2%d2_%h2%n2z.nc4',
MercuryEmis.format: 'CFIO',
MercuryEmis.frequency: 00000000 040000
MercuryEmis.duration: 00000000 040000
MercuryEmis.mode: 'time-averaged'
MercuryEmis.fields: 'EmisHg0anthro ', 'GIGCchem',
'EmisHg0biomass ', 'GIGCchem',
'EmisHg0geogenic ', 'GIGCchem',
'EmisHg0land ', 'GIGCchem',
'EmisHg0ocean ', 'GIGCchem',
'EmisHg0soil ', 'GIGCchem',
'EmisHg0snow ', 'GIGCchem',
'EmisHg0vegetation ', 'GIGCchem',
'EmisHg2HgPanthro ', 'GIGCchem',
'EmisHg2snowToOcean ', 'GIGCchem',
'EmisHg2rivers ', 'GIGCchem',
'FluxHg2HgPfromAirToSnow ', 'GIGCchem',
::
The table below describes the diagnostic quantities belonging to the MercuryEmis collection:
| Diagnostic name | Description | Units | Wildcards | Simulations | Notes | Bpch equiv. |
|---|---|---|---|---|---|---|
| EmisHg0anthro | Emission of Hg0 from anthropogenic sources | kg/s |
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| EmisHg0biomass | Emissions of Hg0 from biomass burning | kg/s |
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| EmisHg0geogenic | Emissions of Hg0 from geogenic sources | kg/s |
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| EmisHg0land | Re-emission of Hg0 from land | kg/s |
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| EmisHg0ocean | Emissions of Hg0 from oceans | kg/s |
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| EmisHg0snow | Emission of Hg0 from snowpack | kg/s |
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| EmisHg0soil | Emissions of Hg0 from soils | kg/s |
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| EmisHg0vegetation | Emission of Hg0 from vegetation | kg/s |
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| EmisHg2HgPanthro | Emission of Hg2 + HgP from anthropogenic sources | kg/s |
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| EmisHg2snowToOcean | Hg2 delivered to oceans from melting snow | kg/s |
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| EmisHg2rivers | Emissions of Hg2 from delivered to oceans from melting snow | kg/s |
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| FluxHg2HgPfromAirToSnow | Deposition flux of Hg2 + HgP from the atmosphere onto snow | kg/s |
|
The MercuryOcean collection
NOTE: This collection has not yet been validated and should be considered experimental.
The MercuryOcean collection contains diagnostics from the mercury ocean model, used in the Hg specialty simulaton.
Here is a sample definition section for the MercuryOcean collection.
- If this collection is not already present in the HISTORY.rc file in the GEOS-Chem run directory for your selected simulation, you can copy and paste this into your HISTORY.rc file and edit accordingly.
- To prevent an individual field from being included in the diagnostic output, place a comment character # in front of the field name.
- Please see our Legend for History diagnostics page for more information about each of the collection tags.
MercuryOcean.template: '%y4%m2%d2_%h2%n2z.nc4',
MercuryOcean.format: 'CFIO',
MercuryOcean.frequency: 00000000 040000
MercuryOcean.duration: 00000000 040000
MercuryOcean.mode: 'time-averaged'
MercuryOcean.fields: 'FluxHg0fromAirToOcean ', 'GIGCchem',
'FluxHg0fromOceanToAir ', 'GIGCchem',
'FluxHg2HgPfromAirToOcean ', 'GIGCchem',
'FluxHg2toDeepOcean ', 'GIGCchem',
'FluxOCtoDeepOcean ', 'GIGCchem',
'MassHg0inOcean ', 'GIGCchem',
'MassHg2inOcean ', 'GIGCchem',
'MassHgPinOcean ', 'GIGCchem',
'MassHgTotalInOcean ', 'GIGCchem',
::
The table below describes diagnostic quantities belonging to the MercuryOcean collection
| Diagnostic name | Description | Units | Wildcards | Simulations | Notes | Bpch equiv. |
|---|---|---|---|---|---|---|
| FluxHg0fromAirToOcean | Deposition flux of Hg0 from the atmosphere to the ocean | kg/s |
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| FluxHg0fromOceanToAir | Volatilizatoin flux of Hg0 from the ocean to the atmosphere | kg/s |
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| FluxHg2HgPfromAirToOcean | Deposition flux of Hg2 + HgP from the atmosphere to the ocean | kg/s |
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| FluxHg2toDeepOcean | Flux of Hg2 sunk to the deep ocean | kg/s |
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| MassHg0inOcean | Total mass of oceanic Hg0 | kg |
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| MassHg2inOcean | Total mass of oceanic Hg2 | kg |
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| MassHgPinOcean | Total mass of oceanic Hg2 | kg |
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| MassHgTotalInOcean | Total mass of all organic mercury | kg |
|
The POPS collection
NOTE: This collection has not yet been validated and should be considered experimental.
The POPS collection contains diagnostic quantities for the Persistent Organic Pollutants (aka POPs) specialty simulation.
Here is a sample definition section for the POPS collection.
- If this collection is not already present in the HISTORY.rc file in the GEOS-Chem run directory for your selected simulation, you can copy and paste this into your HISTORY.rc file and edit accordingly.
- To prevent an individual field from being included in the diagnostic output, place a comment character # in front of the field name.
- Please see our Legend for History diagnostics page for more information about each of the collection tags.
POPS.template: '%y4%m2%d2_%h2%n2z.nc4',
POPS.format: 'CFIO',
POPS.frequency: 00000100 000000
POPS.duration: 00000100 000000
POPS.mode: 'time-averaged'
POPS.fields: 'EmisPOPPOCPO ', 'GIGCchem',
'EmisPOPPBCPO ', 'GIGCchem',
'EmisPOPG ', 'GIGCchem',
'EmisPOPGfromSoil ', 'GIGCchem',
'EmisPOPGfromLake ', 'GIGCchem',
'EmisPOPGfromLeaf ', 'GIGCchem',
'FluxPOPGfromSoilToAir ', 'GIGCchem',
'FluxPOPGfromAirToSoil ', 'GIGCchem',
'FluxPOPGfromLakeToAir ', 'GIGCchem',
'FluxPOPGfromAirtoLake ', 'GIGCchem',
'FluxPOPGfromLeafToAir ', 'GIGCchem',
'FluxPOPGfromAirToLeaf ', 'GIGCchem',
'FugacitySoilToAir ', 'GIGCchem',
'FugacityLakeToAir ', 'GIGCchem',
'FugacityLeafToAir ', 'GIGCchem',
'LossPOPPOCPObyGasPhase ', 'GIGCchem',
'ProdPOPPOCPOfromGasPhase ', 'GIGCchem',
'LossPOPPBPOCbyGasPhase ', 'GIGCchem',
'ProdPOPPBCPOfromGasPhase ', 'GIGCchem',
'ProdPOPGfromOH ', 'GIGCchem',
'ProdPOPPOCPOfromO3 ', 'GIGCchem',
'ProdPOPPOCPIfromO3 ', 'GIGCchem',
'ProdPOPPBCPIfromO3 ', 'GIGCchem',
'ProdPOPPBCPOfromO3 ', 'GIGCchem',
'ProdPOPPOCPOfromNO3 ', 'GIGCchem',
'ProdPOPPOCPIfromNO3 ', 'GIGCchem',
'ProdPOPPBCPIfromNO3 ', 'GIGCchem',
'ProdPOPPBCPOfromNO3 ', 'GIGCchem',
::
The table below describes diagnostic quantities belonging to the POPS collection.
| Diagnostic name | Description | Units | Wildcards | Simulations | Notes | Bpch equiv. |
|---|---|---|---|---|---|---|
| EmisPOPPOCPO | Particulate (hydrophobic organic carbon) POPS emissions | kg/m2/s |
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| EmisPOPPBCPO | Particulate (hydrophobic black carbon) POPS emissions | kg/m2/s |
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| EmisPOPG | POPG (gas-phase) POPS emissions | kg/m2/s |
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| EmisPOPGfromSoil | Secondary emission of POPG from soils | kg/s |
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| EmisPOPGfromLake | Secondary emission of POPG from lakes | kg/s |
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| EmisPOPGfromLeaf | Secondary emission of POPG from leaves | kg/m2/s |
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| FluxPOPGfromSoilToAir | Secondary (positive) flux of POPG from soils to air | ng/m2/day |
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| FluxPOPGfromAirToSoil | Secondary (negative) flux of POPG from air to soil | ng/m2/day |
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| FluxPOPGfromLakeToAir | Secondary (positive) flux of POPG from lakes to air | ng/m2/day |
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| FluxPOPGfromAirToLake | Secondary (negative) flux of POPG from air to lakes | ng/m2/day |
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| FluxPOPGfromLeafToAir | Secondary (positive) flux of POPG from leaves to air | ng/m2/day |
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| FluxPOPGfromAirToLeaf | Secondary (negative) flux of POPG from air to leaves | ng/m2/day |
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| FugacitySoilToAir | Fugacity ratio: soil/air | 1 |
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| FugacityLakeToAir | Fugacity ratio: lake/air | 1 |
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| FugacityLeafToAir | Fugacity ratio: leaf/air | 1 |
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| LossPOPPOCPObyGasPhase | Gross POP OC lost to gas | kg/s |
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| LossPOPPOCPObyGasPhase | Gross POP OC produced from gas | kg/s |
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| LossPOPPBCPObyGasPhase | Gross POP BC lost to gas | kg/s |
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| LossPOPPBCPObyGasPhase | Gross POP BC produced from gas | kg/s |
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| ProdPOPGfromOH | Production of oxidized POPG from reaction with OH | kg/s |
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| ProdPOPPOCPOfromO3 | Production of oxidized POPPOCPO from reaction with O3 | kg/s |
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| ProdPOPPOCPIfromO3 | Production of oxidized POPPOCPI from reaction with O3 | kg/s |
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| ProdPOPPBCPOfromO3 | Production of oxidized POPPBCPO from reaction with O3 | kg/s |
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| ProdPOPPBCPIfromO3 | Production of oxidized POPPBCPI from reaction with O3 | kg/s |
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| ProdPOPPOCPOfromNO3 | Production of oxidized POPPOCPO from reaction with NO3 | kg/s |
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| ProdPOPPOCPIfromNO3 | Production of oxidized POPPOCPI from reaction with NO3 | kg/s |
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| ProdPOPPBCPOfromNO3 | Production of oxidized POPPBCPO from reaction with NO3 | kg/s |
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| ProdPOPPBCPIfromNO3 | Production of oxidized POPPBCPI from reaction with NO3 | kg/s |
|
