Difference between revisions of "History collections for aerosols"
From Geos-chem
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#[[History collections for species concentrations]] | #[[History collections for species concentrations]] | ||
#[[History collections for TransportTracers]] | #[[History collections for TransportTracers]] | ||
| + | #[[History collections for CO2]] | ||
#[[Replicating the behavior of the prior timeseries diagnostics]] | #[[Replicating the behavior of the prior timeseries diagnostics]] | ||
#[[Adding new History diagnostics]] | #[[Adding new History diagnostics]] | ||
Revision as of 16:43, 22 April 2021
Previous | Next | Guide to GEOS-Chem History diagnostics
- Overview of History diagnostics
- Legend for History diagnostics
- Collections for History diagnostics
- History collections for advection and mixing
- History collections for aerosols
- History collections for budgets
- History collections for chemistry and photolysis
- History collections for convection and wet deposition
- History collections for dry deposition
- History collections for mercury and POPs
- History collections for met fields and related quantities
- History collections for methane
- History collections for species concentrations
- History collections for TransportTracers
- History collections for CO2
- Replicating the behavior of the prior timeseries diagnostics
- Adding new History diagnostics
The AerosolMass collection
The AerosolMass collection contains diagnostics for aerosol mass and particulate matter from full-chemistry simulations.
Here is a sample definition section for the AerosolMass collection.
- If this collection is not already present in the HISTORY.rc file in the GEOS-Chem run directory for your selected simulation, you can copy and paste this into your HISTORY.rc file and edit accordingly.
- To prevent an individual field from being included in the diagnostic output, place a comment character # in front of the field name.
- Please see our Legend for History diagnostics page for more information about each of the collection tags.
AerosolMass.template: '%y4%m2%d2_%h2%n2z.nc4',
AerosolMass.format: 'CFIO',
AerosolMass.frequency: 00000100 000000
AerosolMass.duration: 00000100 000000
AerosolMass.mode: 'time-averaged'
AerosolMass.fields: 'AerMassASOA ', 'GIGCchem',
'AerMassBC ', 'GIGCchem',
'AerMassINDIOL ', 'GIGCchem',
'AerMassISN1OA ', 'GIGCchem',
'AerMassISOA ', 'GIGCchem',
'AerMassLVOCOA ', 'GIGCchem',
'AerMassNH4 ', 'GIGCchem',
'AerMassNIT ', 'GIGCchem',
'AerMassOPOA ', 'GIGCchem',
'AerMassPOA ', 'GIGCchem',
'AerMassSAL ', 'GIGCchem',
'AerMassSO4 ', 'GIGCchem',
'AerMassSOAGX ', 'GIGCchem',
'AerMassSOAIE ', 'GIGCchem',
'AerMassSOAME ', 'GIGCchem',
'AerMassSOAMG ', 'GIGCchem',
'AerMassTSOA ', 'GIGCchem',
'BetaNO ', 'GIGCchem',
'PM25 ', 'GIGCchem',
'TotalBiogenicOA ', 'GIGCchem',
'TotalOA ', 'GIGCchem',
'TotalOC ', 'GIGCchem',
::
This table describes the diagnostic quantities belonging to the AerosolMass collection:
| Diagnostic name | Description | Units | Wildcards | Simulations | Notes | Bpch equiv. |
|---|---|---|---|---|---|---|
| AerMassTSOA | Aerosol products of terpene oxidation | ug/m3 |
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| AerMassISOA | Aerosol products of isoprene oxidation | ug/m3 |
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| AerMassTSOA | Aerosol products of terpene oxidation | ug/m3 |
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| AerMassASOA | Aerosol products of light aromatics + IVOC oxidation | ug/m3 |
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| AerMassPOA | Aerosols from SVOCs | ug/m3 |
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| AerMassTSOA | Aerosol products of terpene oxidation | ug/m3 |
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| AerMassOPOA | Aerosol products of POG oxidation | ug/m3 |
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| TotalOA | Sum of all organic aerosol | ug/m3 |
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| TotalOC | Sum of all organic carbon | ug/m3 |
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| BetaNO | NO branching ratio | ug/m3 |
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| AerMassBC | Black carbon (BCPI + BCPO) | ug/m3 |
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| AerMassSO4 | Sulfate | ug/m3 |
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| AerMassNH4 | Ammonium | ug/m3 |
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| AerMassNIT | Nitrate | ug/m3 |
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| AerMassSAL | Sea salt aerosol (SALA + SALC) | ug/m3 |
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| PM25 | Particulate matter (r < 2.5 μm) | ug/m3 |
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| AerMassSOAGX | Aerosol-phase glyoxal | ug/m3 |
|
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| AerMassSOAMG | Aerosol-phase methylglyoxal | ug/m3 |
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| AerMassSOAIE | Aerosol-phase IEPOX | ug/m3 |
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| AerMassSOAME | Aerosol-phase IMAE | ug/m3 |
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| AerMassINDIOL | Generic aerosol-phase organonitrate hydrolysis product | ug/m3 |
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| |
| AerMassLVOCOA | Aerosol-phase low-volatility non-IEPOX product of ISOPOOH (RIP) oxidation | ug/m3 |
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| AerMassISN1OA | Aerosol-phase 2nd generation hydroxynitrates formed from ISOP+NO3 reaction pathway | ug/m3 |
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|
--Bob Yantosca (talk) 14:01, 6 October 2020 (UTC)
The Aerosols collection
The Aerosols collection contains diagnostics for aerosol optical depth and related quantities from full-chemistry simulations.
Here is a sample definition section for the Aerosols collection.
- If this collection is not already present in the HISTORY.rc file in the GEOS-Chem run directory for your selected simulation, you can copy and paste this into your HISTORY.rc file and edit accordingly.
- To prevent an individual field from being included in the diagnostic output, place a comment character # in front of the field name.
- Please see our Legend for History diagnostics page for more information about each of the collection tags.
Aerosols.template: '%y4%m2%d2_%h2%n2z.nc4',
Aerosols.format: 'CFIO',
Aerosols.frequency: 00000100 000000
Aerosols.duration: 00000100 000000
Aerosols.mode: 'time-averaged'
Aerosols.fields: 'AODDust ', 'GIGCchem',
'AODDustWL1_?DUSTBIN? ', 'GIGCchem',
'AODHygWL1_?HYG? ', 'GIGCchem',
'AODSOAfromAqIsopreneWL1 ', 'GIGCchem',
'AODStratLiquidAerWL1 ', 'GIGCchem',
'AODPolarStratCloudWL1 ', 'GIGCchem',
'AerHygroscopicGrowth_?HYG? ', 'GIGCchem',
'AerNumDensityStratLiquid ', 'GIGCchem',
'AerNumDensityStratParticulate ', 'GIGCchem',
'AerAqueousVolume ', 'GIGCchem',
'AerSurfAreaDust ', 'GIGCchem',
'AerSurfAreaHyg_?HYG? ', 'GIGCchem',
'AerSurfAreaStratLiquid ', 'GIGCchem',
'AerSurfAreaPolarStratCloud ', 'GIGCchem',
'Chem_AeroAreaMDUST1 ', 'GIGCchem',
'Chem_AeroAreaMDUST2 ', 'GIGCchem',
'Chem_AeroAreaMDUST3' ', 'GIGCchem',
'Chem_AeroAreaMDUST4 ', 'GIGCchem',
'Chem_AeroAreaMDUST5 ', 'GIGCchem',
'Chem_AeroAreaMDUST6 ', 'GIGCchem',
'Chem_AeroAreaMDUST7 ', 'GIGCchem',
'Chem_AeroAreaSULF ', 'GIGCchem',
'Chem_AeroAreaBC ', 'GIGCchem',
'Chem_AeroAreaOC ', 'GIGCchem',
'Chem_AeroAreaSSA ', 'GIGCchem',
'Chem_AeroAreaSSC ', 'GIGCchem',
'Chem_AeroAreaBGSULF ', 'GIGCchem',
'Chem_AeroAreaICEI ', 'GIGCchem',
'Chem_AeroRadiMDUST1 ', 'GIGCchem',
'Chem_AeroRadiMDUST2 ', 'GIGCchem',
'Chem_AeroRadiMDUST3 ', 'GIGCchem',
'Chem_AeroRadiMDUST4 ', 'GIGCchem',
'Chem_AeroRadiMDUST5 ', 'GIGCchem',
'Chem_AeroRadiMDUST6 ', 'GIGCchem',
'Chem_AeroRadiMDUST7 ', 'GIGCchem',
'Chem_AeroRadiSULF ', 'GIGCchem',
'Chem_AeroRadiBC ', 'GIGCchem',
'Chem_AeroRadiOC ', 'GIGCchem',
'Chem_AeroRadiSSA ', 'GIGCchem',
'Chem_AeroRadiSSC ', 'GIGCchem',
'Chem_AeroRadiBGSULF ', 'GIGCchem',
'Chem_AeroRadiICEI ', 'GIGCchem',
'Chem_WetAeroAreaMDUST1 ', 'GIGCchem',
'Chem_WetAeroAreaMDUST2 ', 'GIGCchem',
'Chem_WetAeroAreaMDUST3 ', 'GIGCchem',
'Chem_WetAeroAreaMDUST4 ', 'GIGCchem',
'Chem_WetAeroAreaMDUST5 ', 'GIGCchem',
'Chem_WetAeroAreaMDUST6 ', 'GIGCchem',
'Chem_WetAeroAreaMDUST7 ', 'GIGCchem',
'Chem_WetAeroAreaSULF ', 'GIGCchem',
'Chem_WetAeroAreaBC ', 'GIGCchem',
'Chem_WetAeroAreaOC ', 'GIGCchem',
'Chem_WetAeroAreaSSA ', 'GIGCchem',
'Chem_WetAeroAreaSSC ', 'GIGCchem',
'Chem_WetAeroAreaBGSULF ', 'GIGCchem',
'Chem_WetAeroAreaICEI ', 'GIGCchem',
'Chem_WetAeroRadiMDUST1 ', 'GIGCchem',
'Chem_WetAeroRadiMDUST2 ', 'GIGCchem',
'Chem_WetAeroRadiMDUST3 ', 'GIGCchem',
'Chem_WetAeroRadiMDUST4 ', 'GIGCchem',
'Chem_WetAeroRadiMDUST5 ', 'GIGCchem',
'Chem_WetAeroRadiMDUST6 ', 'GIGCchem',
'Chem_WetAeroRadiMDUST7 ', 'GIGCchem',
'Chem_WetAeroRadiSULF ', 'GIGCchem',
'Chem_WetAeroRadiBC ', 'GIGCchem',
'Chem_WetAeroRadiOC ', 'GIGCchem',
'Chem_WetAeroRadiSSA ', 'GIGCchem',
'Chem_WetAeroRadiSSC ', 'GIGCchem',
'Chem_WetAeroRadiBGSULF ', 'GIGCchem',
'Chem_WetAeroRadiICEI ', 'GIGCchem',
'Chem_StatePSC ', 'GIGCchem',
'Chem_KhetiSLAN2O5H2O ', 'GIGCchem',
'Chem_KhetiSLAN2O5HCl ', 'GIGCchem',
'Chem_KhetiSLAClNO3H2O ', 'GIGCchem',
'Chem_KhetiSLAClNO3HCl ', 'GIGCchem',
'Chem_KhetiSLAClNO3HBr ', 'GIGCchem',
'Chem_KhetiSLABrNO3H2O ', 'GIGCchem',
'Chem_KhetiSLABrNO3HCl ', 'GIGCchem',
'Chem_KhetiSLAHOClHCl ', 'GIGCchem',
'Chem_KhetiSLAHOClHBr ', 'GIGCchem',
'Chem_KhetiSLAHOBrHCl ', 'GIGCchem',
'Chem_KhetiSLAHOBrHBr ', 'GIGCchem',
::
This table describes the diagnostic quantities belonging to the Aerosols collection:
| Diagnostic name | Description | Units | Wildcards | Simulations | Notes | Bpch equiv. |
|---|---|---|---|---|---|---|
| AODDust | Mineral dust optical depth for 1st wavelength specified in Radiation Menu | 1 |
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| AODDust_WL1_?DUSTBIN? | AOD for 1st wavelength specified in Radiation Menu, for each dust bin | 1 | ?DUSTBIN? |
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| AODHygWL1_<spcname> | Optical depth for selected species (SO4, BC, OC, SALA, SALC) at the 1st wavelength specified in the Radiation Menu | 1 | ?HYG? |
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| AODSOAfromAqIsopreneWL1 | Optical depth of SOA from aqueous isoprene optical depth | 1 |
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| AODStratLiquidAerWL1 | Stratospheric liquid aerosol optical depth (600 nm) |
|
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| AODPolarStratCloudWL1 | Polar stratospheric cloud type 1a/2 optical depth (600 nm) | 1 |
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| AerHygroscopicGrowth_<spcname> | Hygroscopic growth of selected species (SO4, BC, OC, SALA, SALC) | 1 | ?HYG? |
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| AerNumDensityStratLiquid | Stratospheric liquid aerosol number density (UCX simulation only) | 1/cm3 |
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| AerSurfAreaStratLiquid | Stratospheric liquid aerosol surface area (UCX simulation only) | cm2/cm3 |
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| AerSurfAreaPolarStratCloud | Polar stratospheric cloud type 1a/2 surface area (UCX simulation only) | cm2/cm3 |
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| Chem_AeroAreaMDUST1 | Dry aerosol area for mineral dust (bin Reff = 0.15 μm) | cm2/cm3 |
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| Chem_AeroAreaMDUST2 | Dry aerosol area for mineral dust (bin Reff = 0.25 μm) | cm2/cm3 |
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| Chem_AeroAreaMDUST3 | Dry aerosol area for mineral dust (bin Reff = 0.4 μm) | cm2/cm3 |
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| Chem_AeroAreaMDUST4 | Dry aerosol area for mineral dust (bin Reff = 0.8 μm) | cm2/cm3 |
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| Chem_AeroAreaMDUST5 | Dry aerosol area for mineral dust (bin Reff = 1.5 μm) | cm2/cm3 |
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| Chem_AeroAreaMDUST6 | Dry aerosol area for mineral dust (bin Reff = 2.5 μm) | cm2/cm3 |
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| Chem_AeroAreaMDUST7 | Dry aerosol area for mineral dust (bin Reff = 4.0 μm) | cm2/cm3 |
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| Chem_AeroAreaSULF | Dry aerosol area for sulfate | cm2/cm3 |
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| Chem_AeroAreaBC | Dry aerosol area for black carbon | cm2/cm3 |
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| Chem_AeroAreaOC | Dry aerosol area for organic carbon | cm2/cm3 |
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| Chem_AeroAreaSSA | Dry aerosol area for sea salt, accumulation mode | cm2/cm3 |
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| Chem_AeroAreaSSA | Dry aerosol area for sea salt, coarse mode | cm2/cm3 |
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| Chem_AeroAreaBGSULF | Dry aerosol area for background stratospheric sulfate | cm2/cm3 |
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| Chem_AeroAreaICEI | Dry aerosol area for irregular ice cloud (Mischenko) | cm2/cm3 |
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| Chem_AeroRadiMDUST1 | Dry aerosol radius for mineral dust (bin Reff = 0.15 μm) | cm |
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| Chem_AeroRadiMDUST2 | Dry aerosol radius for mineral dust (bin Reff = 0.25 μm) | cm |
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| Chem_AeroRadiMDUST3 | Dry aerosol radius for mineral dust (bin Reff = 0.4 μm) | cm |
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| Chem_AeroRadiMDUST4 | Dry aerosol radius for mineral dust (bin Reff = 0.8 μm) | cm |
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| Chem_AeroRadiMDUST5 | Dry aerosol radius for mineral dust (bin Reff = 1.5 μm) | cm |
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| Chem_AeroRadiMDUST6 | Dry aerosol radius for mineral dust (bin Reff = 2.5 μm) | cm |
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| Chem_AeroRadiMDUST7 | Dry aerosol radius for mineral dust (bin Reff = 4.0 μm) | cm |
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| Chem_AeroRadiSULF | Dry aerosol radius for sulfate | cm |
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| Chem_AeroRadiBC | Dry aerosol radius for black carbon | cm |
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| Chem_AeroRadiOC | Dry aerosol radius for organic carbon | cm |
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| Chem_AeroRadiSSA | Dry aerosol radius for sea salt, accumulation mode | cm |
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| Chem_AeroRadiusSSC | Dry aerosol radius for sea salt, coarse mode | cm |
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| Chem_AeroRadiBGSULF | Dry aerosol radius for background stratospheric sulfate | cm |
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| Chem_AeroRadiusICEI | Dry aerosol radius for irregular ice cloud (Mischenko) | cm |
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| Chem_WetAeroAreaMDUST1 | Wet aerosol area for mineral dust (bin Reff = 0.15 μm) | cm2/cm3 |
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| Chem_WetAeroAreaMDUST2 | Wet aerosol area for mineral dust (bin Reff = 0.25 μm) | cm2/cm3 |
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| Chem_WetAeroAreaMDUST3 | Wet aerosol area for mineral dust (bin Reff = 0.4 μm) | cm2/cm3 |
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| Chem_WetAeroAreaMDUST4 | Wet aerosol area for mineral dust (bin Reff = 0.8 μm) | cm2/cm3 |
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| Chem_WetAeroAreaMDUST5 | Wet aerosol area for mineral dust (bin Reff = 1.5 μm) | cm2/cm3 |
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| Chem_WetAeroAreaMDUST6 | Wet aerosol area for mineral dust (bin Reff = 2.5 μm) | cm2/cm3 |
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| Chem_WetAeroAreaMDUST7 | Wet aerosol area for mineral dust (bin Reff = 4.0 μm) | cm2/cm3 |
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| Chem_WetAeroAreaSULF | Wet aerosol area for sulfate | cm2/cm3 |
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| Chem_WetAeroAreaBC | Wet aerosol area for black carbon | cm2/cm3 |
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| Chem_WetAeroAreaOC | Wet aerosol area for organic carbon | cm2/cm3 |
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| Chem_WetAeroAreaSSA | Wet aerosol area for sea salt, accumulation mode | cm2/cm3 |
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| Chem_WetAeroAreaSSA | Wet aerosol area for sea salt, coarse mode | cm2/cm3 |
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| Chem_WetAeroAreaBGSULF | Wet aerosol area for background stratospheric sulfate | cm2/cm3 |
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| Chem_WetAeroAreaICEI | Wet aerosol area for irregular ice cloud (Mischenko) | cm2/cm3 |
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| Chem_WetAeroRadiMDUST1 | Wet aerosol radius for mineral dust (bin Reff = 0.15 μm) | cm |
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| Chem_WetAeroRadiMDUST2 | Wet aerosol radius for mineral dust (bin Reff = 0.25 μm) | cm |
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| Chem_WetAeroRadiMDUST3 | Wet aerosol radius for mineral dust (bin Reff = 0.4 μm) | cm |
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| Chem_WetAeroRadiMDUST4 | Wet aerosol radius for mineral dust (bin Reff = 0.8 μm) | cm |
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| Chem_WetAeroRadiMDUST5 | Wet aerosol radius for mineral dust (bin Reff = 1.5 μm) | cm |
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| Chem_WetAeroRadiMDUST6 | Wet aerosol radius for mineral dust (bin Reff = 2.5 μm) | cm |
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| Chem_WetAeroRadiMDUST7 | Wet aerosol radius for mineral dust (bin Reff = 4.0 μm) | cm |
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| Chem_WetAeroRadiSULF | Wet aerosol radius for sulfate | cm |
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| Chem_WetAeroRadiBC | Wet aerosol radius for black carbon | cm |
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| Chem_WetAeroRadiOC | Wet aerosol radius for organic carbon | cm |
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| WetChem_AeroRadiSSA | Wet aerosol radius for sea salt, accumulation mode | cm |
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| Chem_WetAeroRadiusSSC | Wet aerosol radius for sea salt, coarse mode | cm |
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| Chem_WetAeroRadiBGSULF | Wet aerosol radius for background stratospheric sulfate | cm |
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| Chem_WetAeroRadiusICEI | Wet aerosol radius for irregular ice cloud (Mischenko) | cm |
|
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| Chem_StatePSC | Polar stratospheric cloud type (cf Kirner et al, 2011, GMD) | count |
|
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| Chem_KhetiSLAN2O5H2O | Sticking coeff. for N2O5 + H2O rxn | 1 |
|
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| Chem_KhetiSLAN2O5HCl | Sticking coeff. for N2O5 + HCl rxn | 1 |
|
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| Chem_KhetiSLAClNO3H2O | Sticking coeff. for ClNO3 + H2O rxn | 1 |
|
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| Chem_KhetiSLAClNO3HCl | Sticking coeff. for ClNO3 + HCl rxn | 1 |
|
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| Chem_KhetiSLAClNO3HBr | Sticking coeff. for ClNO3 + HBr rxn | 1 |
|
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| Chem_KhetiSLABrNO3H2O | Sticking coeff. for BrNO3 + H2O rxn | 1 |
|
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| Chem_KhetiSLABrNO3HCl | Sticking coeff. for BrNO3 + HCl rxn | 1 |
|
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| Chem_KhetiSLAHOClHCl | Sticking coeff. for HOCl + HCl rxn | 1 |
|
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| Chem_KhetiSLAHOClBr | Sticking coeff. for HOCl + HBr rxn | 1 |
|
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| Chem_KhetiSLAHOBrHCl | Sticking coeff. for HOBr + HCl rxn | 1 |
|
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| Chem_KhetiSLAHOBrHCl | Sticking coeff. for HOBr + HBr rxn | 1 |
|
