Difference between revisions of "HEMCO data directories"

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*Used only for biofuel emissions of C3H8, which are missing from Xiao C3H8 emissions.
 
*Used only for biofuel emissions of C3H8, which are missing from Xiao C3H8 emissions.
 
*Retired for all other species in [[GEOS-Chem 12#12.5.0|12.5.0]]. It is superseded by more current global anthropogenic inventories that already include biofuel emissions.
 
*Retired for all other species in [[GEOS-Chem 12#12.5.0|12.5.0]]. It is superseded by more current global anthropogenic inventories that already include biofuel emissions.
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*Introduced in [[GEOS-Chem 12#12.1.0|GEOS-Chem 12.1.0]].
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Revision as of 17:58, 21 October 2019

On this page we describe the directory tree from which the HEMCO emissions component can read emissions inventories and other atmospheric data sets.

Overview

The HEMCO emissions component can read several types of emission inventories, as well as other types atmospheric data sets, such as production and loss rates, or concentration data. We have collated all of this data into a comprehensive directory tree structure. Each folder of the HEMCO data directory tree represents a particular emissions inventory or other data set.

At present, the HEMCO data directory tree resides on the disk servers at Harvard University (and soon at Dalhousie University). We have created a package that will let you download this directory tree to your local disk storage space. For more information, please see the Downloading the HEMCO data directories section below.

Please see our list of recommended default emission inventories, which has been compiled by the Emissions and Deposition Working Group.

--Bob Yantosca (talk) 22:27, 7 September 2017 (UTC)

Default GEOS-Chem emissions configurations

Christoph Keller and the GEOS-Chem Support Team have prepared documents describing the standard GEOS-Chem emissions configurations for recent GEOS-Chem versions. These emissions configurations are specified in the HEMCO configuration file (aka HEMCO_Config.rc), which is read by GEOS-Chem at startup.

Configuration Released Notes
Default emissions configuration for GEOS-Chem 12.3.0Current configuration 01 Apr 2019 Also applies to GEOS-Chem 12.3.1
Default emissions configuration for GEOS-Chem 12.2.0 19 Feb 2019 Also applies to GEOS-Chem 12.2.1
Default emissions configuration for GEOS-Chem 12.1.0 26 Nov 2018 Also applies to GEOS-Chem 12.1.1
Default emissions configuration for GEOS-Chem 12.0.0 10 Aug 2018 Also applies to GEOS-Chem 12.0.1, 12.0.2, and 12.0.3

Information about each individual inventory or data source may be found in the following sections.

HEMCO data directory structure

The sections below describe each of the data sets contained in the HEMCO directory tree, grouped by type.

In each of the tables below:

The Inventory column contains a link that describes each data set in more detail. Most of these links point to existing pages on the GEOS-Chem wiki.
The Data file info column points to the README files that are stored with each data set. Each README provides a list of the files contained within a given folder, information about the data contained in each file, and (often) a description of how the files were created.
The Path column shows the location of each data set, with respect to $ROOT, the top-level HEMCO directory. For example, on the Harvard disk server, $ROOT points to the directory /mnt/gcgrid/data/ExtData/HEMCO/.
The Status column describes the current status of each data set:
CURRENTLY USED Denotes that the data set is part of the standard emissions configuration for GEOS-Chem, that is:
OPTIONAL Denotes that the data set is not part of the the standard GEOS-Chem emissions configuration.
  • But you can still use the data set in your research applications if you wish.
TO BE ADDED SOON Denotes that the data set is not yet ready for use with HEMCO, but will be added soon.
OBSOLETE Denotes that the data set has been removed from the standard GEOS-Chem emissions configuration.
  • In most cases, OBSOLETE means that a newer version of the data is available and should be used instead.
NOT USED Denotes that the data set is not used in the standard GEOS-Chem emissions configuration, even if it is current.
  • For example, another data source is being used in place of this data set for a particular reason.
If use GEOS-Chem, then we recommend that you download the data sets that are listed as CURRENTLY USED, as these form the standard GEOS-Chem emissions configuration. You are free, however, to use any of the data sets listed below. Your choice of data sets will depend on your particular research needs.

--Bob Y. 10:53, 18 March 2015 (EDT)

Aerosol emissions

The following subdirectories of the HEMCO directory tree contain aerosol emission inventories.

NOTE: AeroCom volcanic SO2 emissions are listed under the Emissions implemented as HEMCO extensions.

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
Secondary organic aerosols README $ROOT/SOA/2014-07 3.0 MB CURRENTLY USED
  • Contain various inputs for SOA simulations.
Optional inventories (turned OFF by default in the standard emissions configuration)
Spatially varying OM/OC ratios for SOA species README $ROOT/OMOC/v2018-01 8.6 MB OPTIONAL
  • Controlled by a switch in input.geos
    (default is OFF)
Obsolete inventories (superseded by newer developments)
AEROCOM volcanic emissions README $ROOT/VOLCANO/v2015-02 1.6 GB OBSOLETE
  • Retired in 12.4.0. Superseded by updated AeroCom emissions implemented via the Volcano HEMCO extension.
Tami Bond et al (2007) BC and OC emissions README $ROOT/BCOC_BOND/v2014-07 3.0 MB OBSOLETE
  • Retired in 12.5.0. Superseded by CEDS.
Cooke et al BC and OC emissions README $ROOT/BCOC_COOKE/v2014-07 744 KB OBSOLETE
  • Superseded by Bond et al (2007).

--Melissa Sulprizio (talk) 14:02, 14 June 2019 (UTC)

Anthropogenic and biofuel emissions

The following subdirectories of the HEMCO directory tree contain inventories of anthropogenic and biofuel emissions.

Please also see list of species included in each of these global inventories and regional inventories.

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
APEI Canadian emissions
(1989-2014)
README $ROOT/APEI/v2016-11/ 68 MB CURRENTLY USED
NEI2011 hourly US emissions README $ROOT/NEI2011/v2015-03 248 GB CURRENTLY USED
  • Overwrites CO, NO, NO2, HNO2, NH3, CH2O, RCHO, MACR, ACET, ALK4, PRPE, EOH, MOH, XYLE, TOLU, BENZ, SO2, SO4, C2H4, C2H6, C3H8, ALD2, BC, and OC over the USA.
  • Use NEI2011 for simulations covering the period 2006-2013; otherwise use NEI2005.
NEI2011 monthly mean US emissions README $ROOT/NEI2011/v2017-02-MM 248 GB CURRENTLY USED
  • Overwrites CO, NO, NO2, HNO2, NH3, CH2O, RCHO, MACR, ACET, ALK4, PRPE, EOH, MOH, XYLE, TOLU, BENZ, SO2, SO4, C2H4, C2H6, C3H8, ALD2, BC, and OC over the USA.
  • Use NEI2011 for simulations covering the period 2006-2013; otherwise use NEI2005.
MIX Asian anthropogenic emissions README $ROOT/MIX/v2015-03 623 MB CURRENTLY USED
  • Replaces David Streets et al emissions.
  • The base years for MIX is 2008 and 2010, as opposed to 2006 for Streets.
DICE-Africa anthropogenic emissions README $ROOT/DICE_Africa/v2016-10 202 MB CURRENTLY USED
EDGAR v4.3 anthropogenic emissions README $ROOT/EDGARv43/v2016-11 6.2 GB CURRENTLY USED
  • Used for sectors not included in DICE-Africa inventory
  • Can be used instead of CEDS
  • Turning on this option will also include trash burning emissions of NOx, SOx, CO, NH3, BC and OC from Wiedinmyer et al. (2014) and NMVOC emissions from CEDS
CEDS anthropogenic emissions README $ROOT/CEDS/v2018-04 140 GB CURRENTLY USED
  • Introduced in v11-02f
  • New default inventory (replaces EDGAR)
  • CEDS is also the default ship emissions inventory in GEOS-Chem 12.1.0 and later versions.
POET (anthropogenic EOH inventory) README $ROOT/POET/v2017-03/ 38 MB CURRENTLY USED
C2H6 global emissions from Tzompa et al. (2017) README $ROOT/C2H6_2010/v2019-06 536 KB CURRENTLY USED
  • Introduced in v11-02f
  • Overwrites the C2H6 emissions from the CEDS to address underestimates
C3H8 global emissions from Xiao et al. (2010) README $ROOT/XIAO/v2014-09 308 KB CURRENTLY USED
  • Overwrites the C3H8 emissions from CEDS to address underestimates
Yevich & Logan biofuels README $ROOT/BIOFUEL/v2014-07 1.1 MB CURRENTLY USED
  • Used only for biofuel emissions of C3H8, which are missing from Xiao C3H8 emissions.
  • Retired for all other species in 12.5.0. It is superseded by more current global anthropogenic inventories that already include biofuel emissions.
Anthropogenic PM2.5 dust source (AFCID) README $ROOT/AFCID/2018-04 4.4 MB OPTIONAL
  • Introduced in GEOS-Chem 12.1.0.
  • In GEOS-Chem 12.5.0 AFCID was separated from the DEAD dust emissions extension to allow for use with offline dust emissions as well.
Optional inventories (turned OFF by default in the standard emissions configuration)
Trash burning emissions README HEMCO/TrashEmis/v2015-03/ 86 MB OPTIONAL
  • Introduced in #v11-02f|v11-02f
  • Used when EDGAR v4.3 anthropogenic emissions are used in place of CEDS
HTAP global anthro+biofuel README $ROOT/HTAP/v2015-03 4.5 GB OPTIONAL
  • Can be used instead of CEDS emissions.
  • NOTE: HTAP includes some regional emissions from other inventories. If you select HTAP you might not need to select the other regional inventories in HEMCO. See this document for more information.
MASAGE agricultural NH3 README $ROOT/MASAGE_NH3/v2015-02 4.4 MB OPTIONAL
  • Adds to the anthropogenic NH3 category.
NEI2011 agricultural emissions only README $ROOT/NEI2011_ag_only/v2015-03 648 MB OPTIONAL
Obsolete inventories (superseded by newer developments)
NEI/VISTAS scale factors README1
README2
$ROOT/VISTAS/v2014-07
$ROOT/VISTAS/v2014-07/VISTAS_NOX
$ROOT/VISTAS/v2014-07/VISTAS_WEWD
46 MB OBSOLETE
  • Used to scale NO in the NEI2005 inventory.
RETRO VOC emissions README $ROOT/RETRO/v2014-07/orig_kgC 38 MB OBSOLETE
  • Retired in 12.5.0. Superseded by CEDS.
Streets regional anthro README1
README2
$ROOT/STREETS/v2014-07 1.7 MB OBSOLETE
  • Retired in 12.5.0. Superseded by MIX.
EMEP regional anthropogenic README $ROOT/EMEP/v2015-03 24 MB OBSOLETE
  • Retired in 12.5.0. This was the default CO, NH3, NO, SO2, PRPE, ALK4, C2H6, ALD2, and MEK inventory for Europe for versions prior to 12.5.0. The more recent CEDS global emissions are now used over Europe.
BRAVO regional anthropogenic README $ROOT/BRAVO/v2014-07 68 KB OBSOLETE
  • Retired in 12.2.0. This was the default CO, NO, and SO2 inventory for Mexico for 12.1.0 and prior versions. The more recent CEDS global emissions are now used over Mexico.
CAC regional anthropogenic README $ROOT/CAC/v2016-09 29 MB OBSOLETE
  • Superseded by the APEI historical Canadian emissions
NEI2008 regional anthro/biofuel README $ROOT/NEI2008/v2015-02 3.0 GB OBSOLETE
  • Superseded by NEI2011.
EDGAR v4.2 global anthropogenic README $ROOT/EDGARv42/v2015-02
$ROOT/EDGARv42/v2015-02/CO
$ROOT/EDGARv42/v2015-02/NH3
$ROOT/EDGARv42/v2015-02/NO
$ROOT/EDGARv42/v2015-02/SO2
$ROOT/EDGARv42/v2015-02/VOCv2
4.5 GB OBSOLETE
  • Superseded by EDGAR v4.3
GEIA global anthropogenic README $ROOT/GEIA/v2014-07 4.8 MB OBSOLETE
  • Slated for replacement by newer inventories
EDGAR v3 global anthropogenic README $ROOT/EDGAR/v2014-07 40 MB OBSOLETE

--Melissa Sulprizio (talk) 14:18, 14 June 2019 (UTC)

Anthropogenic aircraft and ship emissions

The following subdirectories of the HEMCO directory tree contain inventories of anthropogenic aircraft and ship emissions.

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
AEIC aircraft README $ROOT/AEIC/v2015-01 2.0 GB CURRENTLY USED
  • Default global aircraft emissions inventory.
  • Contains fuel burned, NO, CO, and hydrocarbons.
CEDS ship README $ROOT/CEDS/v2018-04 140 GB CURRENTLY USED
  • Stored together w/ other CEDS data files.
Optional inventories (turned OFF by default in the standard emissions configuration)
ARCTAS ship emissions (SO2) README $ROOT/ARCTAS_SHIP/v2014-07 508 KB OPTIONAL
  • Superseded by CEDS ship emissions in GEOS-Chem 12.1.0 and later versions.
  • See notes below.
ICOADS ship (CO) README $ROOT/ICOADS_SHIP/v2014-07 4.2 MB OPTIONAL
  • Superseded by CEDS ship emissions in GEOS-Chem 12.1.0 and later versions.
  • See notes below.
Corbett et al ship emissions (SO2) README $ROOT/CORBETT_SHIP/v2014-07 1.8 MB OPTIONAL
  • Superseded by CEDS ship emissions in GEOS-Chem 12.1.0 and later versions.
  • See notes below.
HTAP ship (CO, NO, SO2) README $ROOT/HTAP/v2015-03 4.5 GB OPTIONAL
NEI2011 ship (several species) README $ROOT/NEI2011/v2015-03 248 GB OPTIONAL
  • NOTE: Only extends a few km from land, so this is more of a coastal emissions inventory. It is turned off by default.
Obsolete inventories (superseded by newer developments)
EMEP ship (CO, NO, SO2) README $ROOT/EMEP/v2015-03 24 MB OBSOLETE
  • Retired in 12.5.0. The more recent CEDS global emissions are now used over Europe.
EDGAR v3 ship (CO) README $ROOT/EDGAR/v2014-07 40 MB OBSOLETE
EDGAR v4.2 ship README $ROOT/EDGARv42/v2015-02 4.5 GB NOT USED
  • EDGAR v4.2 ship emissions are not used because they are lumped with other non-road transportation sectors (aircraft, rail, etc), and thus cannot be easily separated.


NOTES about ship emissions:

  1. CEDS ship emissions are the default ship inventory in GEOS-Chem 12.1.0 and later versions.
    • Data files for CEDS ship emissions are stored with the other CEDS emission sector files in the HEMCO data path: $ROOT/CEDS/v2018-04/.
  2. If CEDS emissions are turned off above then:
    • ARCTAS should be used over ICOADS, CORBETT, and HTAP for SO2
    • ICOADS should be used for CO and NO.
  3. The NEI2011 ship inventory only goes a few km from land, so it isn’t a complete "ship inventory". This is turned off by default in the HEMCO configuration files that ship with GEOS-Chem.

--Melissa Sulprizio (talk) 14:27, 14 June 2019 (UTC)

Biomass burning emissions

The following subdirectories of the HEMCO directory tree contain inventories of biomass burning emissions.

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
GFED4 biomass burning (v4.1) README $ROOT/GFED4/v2015-10 692 MB CURRENTLY USED
  • This is GFED v4.1, which is the default in v11-01 and higher versions
  • Monthly-mean data is available from 1998-2016
  • Uses daily scale factors from GFED3.
  • Uses 3-hourly scale factors from GFED3.
Optional inventories (turned OFF by default in the standard emissions configuration)
GFAS biomass burning emissions README $ROOT/GFAS/v2018-09 45 GB OPTIONAL
  • Monthly data are available from 2003-present and are updated monthly
FINN biomass burning (v1.6) README $ROOT/FINN/v2018-04 1.1 GB TO BE ADDED SOON
  • NOTE: Awaiting reprocessed data files to correct an error.
  • Compatible with v11-02 and higher versions
FINN biomass burning (v1.5) README $ROOT/FINN/v2015-02 689 MB OPTIONAL
QFED biomass burning (v2.5r1) README $ROOT/QFED/v2018-07 57 GB OPTIONAL
QFED biomass burning (v2.4r6) README $ROOT/QFED/v2014-09 57 GB OPTIONAL
  • QFED v2.4r6 data ends in October 2016.
Obsolete inventories (superseded by newer developments)
GFED4 biomass burning (v4.0) README $ROOT/GFED4/v2015-06 115 MB OBSOLETE
  • This was the default in v10-01 and prior versions.
  • Superseded by GFED v4.1
GFED3 biomass burning README $ROOT/GFED3/v2014-10 343 MB OBSOLETE
GFED2 biomass burning README $ROOT/GFED2/v2014-07 196 KB OBSOLETE
  • Superseded by GFED4.
Duncan et al biomass burning README $ROOT/BIOBURN/v2014-07 925 MB OBSOLETE
  • Superseded by GFED4.

--Bob Yantosca (talk) 15:08, 22 June 2018 (UTC)

Offline grid-independent emissions

Offline grid-independent emissions were generated by running high-resolution (0.25°x0.3125° for GEOS-FP, 0.5°x0.625° for MERRA-2) simulations using the HEMCO standalone and online emissions from the HEMCO extensions.

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
Offline dust emissions README $ROOT/OFFLINE_DUST/v2019-01 18 GB CURRENTLY USED
Offline biogenic VOC emissions README $ROOT/OFFLINE_BIOVOC/v2019-01 1006 GB CURRENTLY USED
Offline sea salt emissions README $ROOT/OFFLINE_SEASALT/v2019-01 848 GB CURRENTLY USED
Offline soil NOx emissions README $ROOT/OFFLINE_SOILNOX/v2019-01 46 GB CURRENTLY USED

--Melissa Sulprizio (talk) 14:43, 14 June 2019 (UTC)

Emissions implemented as HEMCO extensions

The following subdirectories of the HEMCO directory tree contain input data used by various HEMCO extensions. These HEMCO extensions compute emissions for quantities that depend on meteorological variables (e.g. emissions from lighting, biogenic processes, etc.).

NOTE: GFED3, GFED4 and FINNv1 are implemented as HEMCO extensions, but we have listed them with the other biomass burning inventories, for clarity.

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
Acetone ocean exchange README $ROOT/ACET/v2014-07 52 KB CURRENTLY USED
DMS ocean exchange README $ROOT/DMS/v2015-07 3.0 MB CURRENTLY USED
  • This is the default in v11-01 and higher versions
  • Uses Lana 2011 climatology
NO from lightning README $ROOT/OFFLINE_LIGHTNING/v2019-01/ 47 GB CURRENTLY USED
PARANOX ship plume model README $ROOT/PARANOX/v2015-02 162 MB CURRENTLY USED
  • Computes the aging of emissions in ship exhaust plumes.
AeroCom volcanic emissions README $ROOT/VOLCANO/v2019-04 660 MB CURRENTLY USED
Optional inventories (turned OFF by default in the standard emissions configuration)
DEAD dust model README $ROOT/DUST_DEAD/2014-07 712 KB OPTIONAL
  • May be used instead of offline dust emissions
Anthropogenic PM2.5 dust source (AFCID) README $ROOT/DUST_DEAD/2018-04 4.4 MB OPTIONAL
  • Introduced in GEOS-Chem 12.1.0.
  • AFCID will be used if the DEAD dust emissions extension is activated.
MEGAN biogenic emissions README $ROOT/MEGAN/v2018-05 12 MB OPTIONAL
  • May be used instead of offline biogenic VOC emissions
NO from soils/fertilizers README $ROOT/SOILNOX/v2014-07 79 MB OPTIONAL
  • May be used instead of offline soil NOx emissions
GINOUX dust model README $ROOT/DUST_GINOUX/2014-07 36 KB OPTIONAL
  • You can use this in place of the DEAD dust model.
Obsolete inventories (superseded by newer developments)
NO from lightning README $ROOT/LIGHTNOX/v2017-09 8.5 MB OBSOLETE
  • Superseded by OFFLINE_LIGHTNING/2019-01
DMS ocean exchange README $ROOT/DMS/v2014-07 2.2 MB OBSOLETE
  • Superseded by the Lana 2011 climatology
MEGAN biogenic emissions README $ROOT/MEGAN/v2015-02 2.0 MB OBSOLETE
  • Superseded by MEGAN/v2017-07 and MEGAN/v2018-05.

--Melissa Sulprizio (talk) 14:43, 14 June 2019 (UTC)

Future and historical emissions

The following subdirectories of the HEMCO directory tree contain historical and future emissions inventories.

Inventory Data file info Path Directory size Status
RCP future scenarios README $ROOT/RCP/v2015-02 368 MB OPTIONAL
  • RCP emissions are not part of the standard GEOS-Chem emissions configuration but may be used as a research option.

GEOS-Chem specialty simulation data

The following subdirectories of the HEMCO directory tree input data (emissions, oxidants, etc.) for use with the GEOS-Chem specialty simulations. If you do not regularly use these simulations, you may choose not to download these data directories.

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
Aerosol-only simulation README $ROOT/OFFLINE_AEROSOL/v2014-09 165 MB CURRENTLY USED
CH4 simulation README $ROOT/CH4/v2014-09 274 MB CURRENTLY USED
CO2 simulation README1
README2
README3
README4
README5
README6
$ROOT/CO2/v2015-04
$ROOT/CO2/v2015-04/BIO/
$ROOT/CO2/v2015-04/BIOFUEL/
$ROOT/CO2/v2015-04/CHEM/
$ROOT/CO2/v2015-04/FOSSIL/
$ROOT/CO2/v2015-04/OCEAN/
1033 MB CURRENTLY USED
Mercury simulation README1
README2
README3
README4
README5
README6
README7
README8
README9
README10
$ROOT/MERCURY/v2014-09
$ROOT/MERCURY/v2014-09/ARTISANAL
$ROOT/MERCURY/v2014-09/BrOx
$ROOT/MERCURY/v2014-09/Hg2_PARTITION
$ROOT/MERCURY/v2014-09/JVALUES
$ROOT/MERCURY/v2014-09/NATURAL
$ROOT/MERCURY/v2014-09/NEI2005
$ROOT/MERCURY/v2014-09/OCEAN
$ROOT/MERCURY/v2014-09/SOIL
$ROOT/MERCURY/v2014-09/STREETS
342 MB CURRENTLY USED
POPs simulation README $$ROOT/POPs/v2015-08 809 MB CURRENTLY USED
RRTMG radiative transfer model README $ROOT/RRTMG/v2018-11 19 MB CURRENTLY USED
Tagged CO simulation README $ROOT/TAGGED_CO/v2017-04 260 KB CURRENTLY USED
Tagged O3 simulation README $ROOT/TAGGED_O3/v2014-09 372 MB CURRENTLY USED
O3 for offline simulations README $ROOT/O3/v2014-09 130 MB CURRENTLY USED
OH for offline simulations
README1
README2
$ROOT/OH/v2014-09
$ROOT/OH/v2014-09/v5-07-08
$ROOT/OH/v2014-09/v7-02-03.GMI
148 MB CURRENTLY USED
H2O2 for offline simulations README $ROOT/OXIDANTS/v2014-07 32 MB CURRENTLY USED
Oceanic Chlorophyll-A for Hg simulations README $ROOT/CHLA/v2014-07 2.0 MB CURRENTLY USED
Obsolete inventories (superseded by newer developments)
CH3I simulation README $ROOT/CH3I/v2014-07 280 KB OBSOLETE
  • This simulation is no longer used in GEOS-Chem (awaiting revival)
POPs simulation README $ROOT/POPs/v2014-09 622 MB OBSOLETE
  • Superseded by v2015-08
Tagged CO simulation README $ROOT/TAGGED_CO/v2014-08q 260 KB OBSOLETE
  • Superseded by v2017-04

--Bob Yantosca (talk) 19:01, 2 July 2018 (UTC)

Halogen emissions

The following subdirectories of the HEMCO directory tree contain inventories of bromine and iodine emissions.

NOTE: See our Non-emissions data section for information about stratospheric bromine concentration data.

Inventory Data file info Path Directory size Status
Liang et al VSL emissions README $ROOT/BROMINE/v2015-02 156 KB CURRENTLY USED
Ordonez et al Iodine emissions README $ROOT/IODINE/v2017-09 4.4 MB CURRENTLY USED

--Bob Yantosca (talk) 19:02, 2 July 2018 (UTC)

Natural emissions data

The following subdirectories of the HEMCO directory tree contain inventories natural emissions.

Inventory Data file info Path Directory size Status
GEIA NH3 (natural source) README $ROOT/NH3/v2014-07 8.1 MB CURRENTLY USED
NH3 emissions from arctic sea birds README HEMCO/NH3/v2018-04/ 104 MB CURRENTLY USED

Non-emissions data

The following subdirectories of the HEMCO directory tree input data contains non-emissions data sets. Most of these are used as inputs to GEOS-Chem's chemistry modules (i.e. photolysis, stratospheric chemistry, etc.).

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
GMI strat chem mechanism README $ROOT/GMI/v2015-02 16 GB CURRENTLY USED
  • Used to compute P & L of species in the stratosphere.
Stratospheric Bry from CCM README $ROOT/STRAT/v2015-01/Bry 385 MB CURRENTLY USED
  • Required for the for the full-chemistry simulations.
Timezone offsets from UTC README $ROOT/TIMEZONES/v2015-02 264 KB CURRENTLY USED
  • Used by HEMCO to compute emissions that depend on local time rather than on UTC time.
TOMS/SBUV O3 columns README $ROOT/TOMS_SBUV/v2016-11 21 MB CURRENTLY USED
UCX chemistry mechanism README $ROOT/UCX/v2018-02 12 GB CURRENTLY USED
  • Used to compute P & L of species in the stratosphere.
  • Can be used instead of GMI.
UV surface albedoes README $ROOT/UVALBEDO/v2015-03 476 KB CURRENTLY USED
Future inventories (to be added soonObsolete inventories (superseded by newer developments)
MODIS XLAI
(leaf area index per land type)
README $ROOT/MODIS_XLAI/v2017-07 203 MB TO BE ADDED SOON
Olson land map
(masks for each land type)
README $ROOT/OLSON_MAP/v2019-02 1.9 MB TO BE ADDED SOON
  • To be added in GEOS-Chem 12.3.0
  • Used for regridding of MODIS_XLAI or Yuan_XLAI via HEMCO
Yuan-processed MODIS XLAI
(leaf area index per land type)
README $ROOT/Yuan_XLAI/v2019-03 203 MB TO BE ADDED SOON
Obsolete inventories (superseded by newer developments)
TOMS/SBUV O3 columns README $ROOT/TOMS_SBUV/v2015-03 17 MB OBSOLETE
  • Superseded by v2016-11

--Bob Yantosca (talk) 15:50, 11 March 2019 (UTC)

Oceanic emissions

The following folders contain data used to compute oceanic emissions of GEOS-Chem species.

Inventory Data file info Path Directory size Status
Fields to compute ALD2 emissions
  • Seawater concentration of acetaldehyde
  • Heterotrophic respiration rates, used to compute biogenic emissions of ALD2 and EOH
README $ROOT/ALD2/v2017-03 0.5 MB CURRENTLY USED

--Bob Yantosca (talk) 17:14, 28 June 2018 (UTC)

Other inputs for HEMCO

The following subdirectories of the HEMCO directory tree input data for various HEMCO functions. These include regional masks, emission scale factors, and grid information.

Inventory Data file info Path Directory size Status
Active inventories (turned ON by default in the standard emissions configuration)
Annual scale factors README $ROOT/AnnualScalar/v2014-07 3.0 MB CURRENTLY USED
  • Used to scale NEI2005 and other emissions to years other than the inventory base year.
NEI2005 scale factors README $ROOT/NEI2005/v2014-09 8.1 MB CURRENTLY USED
ID codes for each country README $ROOT/COUNTRY_ID/v2015-04 15 MB CURRENTLY USED
  • ISO ALPHA-3 standard country codes are contained on an 0.1° x 0.1° grid. HEMCO can use these ID's to apply country-level scale factors to any emissions field.
Mask files for regional emissions README $ROOT/MASKS/v2014-07 51 MB CURRENTLY USED
  • Masks define the geographical regions where the various regional emissions (e.g. BRAVO, CAC, NEI) are to be applied.
MAP_A2A regridding data README $ROOT/MAP_A2A/v2014-07 152 KB CURRENTLY USED
Obsolete inventories (superseded by newer developments)
Weekly scale factors README $ROOT/WEEKSCALE/v2014-07 4.0 KB OBSOLETE
  • Not currently in use

--Bob Yantosca (talk) 19:05, 2 July 2018 (UTC)

Downloading the HEMCO data directories

The GEOS-Chem Support Team has created a package called hemco_data_download. With this package, you can download the various emissions inventories and related data files for HEMCO to your own disk server. Furthermore, you can specify which data directories that you would like to download (as well as those you would like to ignore) via a configuration file.

Obtaining the hemco_data_download package

To obtain the hemco_data_download package, use Git to clone this repository

git clone https://github.com/GCST/hemco_data_download.git

This will create a directory named hemco_data_download, in which you should see the following files:

File Description
README File with an overall description of the directory contents
hemcoDataDownload.pl Perl script to download HEMCO data directories
hemcoDataDownload.rc Configuration file for the hemcoDataDownload.pl script. In this file you can specify which HEMCO data directories you would like to download and which you would like to omit.
forTesting.rc A configuration file that you can use for testing or debugging. This will tell hemcoDataDownload.pl only to download a couple of emissions inventories with files that do not take up much disk space.

--Bob Yantosca (talk) 17:02, 5 December 2016 (UTC)

Setting up the configuration file

The configuration files (i.e. hemcoDataDownload.rc and forTesting.rc) are pretty much self-explanatory.

At the top of the configuration file you will see this section:

###############################################################################
#                                                                             #
#  Specify the remote and local HEMCO data paths, plus other options.         #
#                                                                             #
###############################################################################

Remote HEMCO data path | ftp://ftp.as.harvard.edu/gcgrid/data/ExtData/HEMCO
Your HEMCO data path   | /as/scratch/bmy/HEMCO
Verbose output         | yes
Dryrun only?           | no
Path Description
Remote HEMCO data path Location on the FTP server from which you are going to download the data. This can be from either Harvard or from Dalhousie. (For now we will use the Harvard server). You can edit this accordingly.
Your HEMCO data path The root-level directory for HEMCO data on your own disk space. If you are not sure where to place this, then ask your sysadmin.
Verbose output Lets you specify if you want to print out extra output during the download process. This can be set to either "yes" or "no".
Dryrun only Allows you to print out the data download commands without actually downloading the data. This is useful for debugging. This can be set to either "yes" or "no".

In the next section you specify all of the HEMCO inventories that you want to download. You will see this header:

###############################################################################
#                                                                             #
#  THE FOLLOWING DATA DIRECTORIES WILL BE DOWNLOADED.                         #
#                                                                             #
#  These data directories comprise the recommended emissions configuration    #
#  for typical GEOS-Chem full-chemistry and specialty simulations.            #
#                                                                             #
#  NOTE: In most cases, you only have to specify the top-level folder.        #
#  All subfolders will be downloaded automatically.                           #
#                                                                             #
###############################################################################

#=============================+================================================
# AEROSOLS                    | Directory paths
#=============================+================================================
AEROCOM volcano emissions     | $ROOT/VOLCANO/v2014-10
Bond et al BC/OC              | $ROOT/BCOC_BOND/v2014-07
Cooke et al BC/OC             | $ROOT/BCOC_COOKE/v2014-07
Secondary organic aerosols    | $ROOT/SOA/v2014-07
... etc ...

Each line specifies the name of a HEMCO emissions inventory and the data path where it can be found on disk, relative to the root data path. NOTE: The script will replace the $ROOT token with the value you gave to the "HEMCO remote data path" above. (Lines starting with the comment character # will be ignored.)

Any inventory found in this section will be downloaded. To prevent an inventory from being downloaded you can either comment it out (i.e. place a # in the first column) or move the inventory to the next section.

The final section specifies HEMCO emission inventories that you do not wish to download. The section looks like this:

###############################################################################
#                                                                             #
#  THE FOLLOWING DATA DIRECTORIES WILL NOT BE DOWNLOADED.                     #
#                                                                             #
#  These data directories contain are optional emissions inventories that     #
#  are not used in typical GEOS-Chem simulations.  If you wish to download    #
#  any of these inventories, simply move the corresponding entry for each     #
#  inventory to the previous section.                                         #
#                                                                             #
###############################################################################

CH3I simulation (obsolete)    | $ROOT/CH3I/v2014-07
Chlorophyll A                 | $ROOT/CHLA/v2014-07
... etc ...

--Bob Y. 13:55, 12 February 2015 (EST)

Downloading the data

Once you have set up your configuration file, you can run the hemcoDataDownload.pl script to start downloading the HEMCO data to your local server. To run the script you can type:

hemcoDataDownload.pl

If you do not specify a configuration file name, then the hemcoDataDownload.pl scriptwill read the default configuration file hemcoDataDownload.rc configuration file. If you wish to specify a different configuration file name, simply pass that as an argument to the script, e.g.

hemcoDataDownload.pl myNewConfigFile.rc

Before you start downloading GB's of data, we recommend that you run a short test to make sure that the data directories are being copied to the proper locations on your disk server. For this purpose, we have provided a configuration file named forTesting.rc. Typing

hemcoDataDownload.pl forTesting.pl

will only download a couple of data inventories that do not take up much disk space. This allows you to ensure that the data transfer is sucessful without making you wait a long time.

--Bob Y. 13:57, 12 February 2015 (EST)

New features for the GEOS-Chem v10-01 public release

For the GEOS-Chem v10-01 public release, we modified the default download options in the hemcoDataDownload.pl script. We changed the default wget options from:

wget r -nH -q ... 

to

wget -r -nH -c -N -q ...

This will tell wget to only download new or modified files, instead of trying to download the entire data archive from scratch. This should hopefully subsequent data download processes faster.

--Bob Y. (talk) 18:35, 16 June 2015 (UTC)

Submitting new data for use with HEMCO

If you have a new emissions inventory or other atmospheric data set that you would like to add to the HEMCO data directories, then please contact the GEOS-Chem Support Team. Data files must be in COARDS-compliant or CF-compliant netCDF format. Please see our Preparing data files for use with HEMCO wiki page for more information.

--Bob Y. 11:49, 5 March 2015 (EST)