GEOS-Chem v9-01-03 benchmark history

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On this page we have posted complete information about all benchmark simulations (both 1-month and 1-year) for GEOS-Chem v9-01-03.

v9-01-03d

Here is the assessment form for 1-month benchmark simulation v9-01-03d.

Description
New features added into GEOS-Chem:
Developer name(s) and institution(s):
  • Sea salt improvements: Lyatt Jaeglé (U. Washington)
  • Dust submicron size distribution: David Ridley (Colo. State)
Version, resolution, met fields used: v9-01-03, GEOS-5 (47L), 4x5
1-month benchmark finished on: Thu Dec 22 20:24:55 EST 2011
Performance statistics:
  • Ran on 8 CPUs of terra-05-c.as.harvard.edu (2.793 GHz x 16 CPU)
  • Wall time: 1:19
  • Scalability: 7.6124
Compared to previous benchmark: v9-01-03c
This update will impact:
(select all that apply with boldface)
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): Sea salt emissions, Dust AOD
Plots may be viewed at: ftp://ftp.as.harvard.edu/pub/exchange/mpayer/1mo_quick_look/v9-01-03d/
Metrics
Global mean OH (from log file): 13.3186218315005 x 105 molec/cm3
Methyl chloroform lifetime: 4.7003 years
Did either of these change by more than 5%? No
At the SURFACE, list all species that changed by 10% or more: SALA, SALC, N2O5, HNO3, NIT, NITs, NH4, NH3, SO4s, HNO4, NOx, PAN
Comments on SURFACE differences: Concentrations of sea salt aerosols (SALA and SALC) increase in the tropics by ~50-100% and decrease at mid-high latitudes by 50-100% as expected from the implementation of the SST dependent sea salt source function.

The impact on other species is largest for nitrogen and sulfur species that directly interact with sea salt. While the levels for some of these species change by factors of 1.5-2 over the tropical and high latitude oceans (HNO3, NIT, NITs, SO4s, NH3, NH4), their concentrations are very small in these remote regions, so the absolute changes are small. For example, HNO3 increases by more than a factor of 2 over the remote southern ocean, and decreases by a factor of 2 over the tropics. But the absolute changes are a few pptv at the surface.

At 500 hPa, list all species that changed by 10% or more: SALA, SALC, SO4s, NH3, NIT, NITs
Comments on 500 hPa differences:
In the ZONAL MEAN differences, list all species that changed by 10% or more: SALA, SALC, HNO3, N2O5, HNO4, SO4s, NH4, NIT, NITs
Comments on ZONAL MEAN differences: Most of the effects are concentrated near the surface, where the sea salt burden is highest.
In the EMISSION RATIO maps, list all species that changed by 10% or more: SALA, SALC
Comments on EMISSION RATIO differences: As expected from the inclusion of a SST dependence in the sea salt source function, sea salt emissions for accumulation mode sea salt aerosols (SALA) increase by 30-80% in warm tropical regions, and decrease by ~50% over high-latitudes. Overall SALA emissions decrease by 23%. Global emission of coarse mode sea salt aerosols (SALC) increase by 70%, with the largest increases in the tropics. This is driven by both the SST dependence but also the expansion of the size distribution of sea salt from 0.5-4 to 0.5-8 microns.
Additional or summary comments:
Approval
Requires further investigation: TBD
Approved: TBD
Date of approval: TBD

--Melissa Payer 14:39, 3 January 2012 (EST)

v9-01-03c

Here is the assessment form for 1-month benchmark simulation v9-01-03c.

Description
New features added into GEOS-Chem:
Developer name(s) and institution(s):
  • Jingqiu Mao (NOAA/GFDL)
Version, resolution, met fields used: v9-01-03, GEOS-5 (47L), 4x5
1-month benchmark finished on: Fri Dec 16 00:16:12 EST 2011
Performance statistics:
  • Ran on 8 CPUs of terra-11-c.as.harvard.edu (2.660 GHz x 8 CPU)
  • Wall time: 1:58
  • Scalability: 6.2283
Compared to previous benchmark: v9-01-03b
This update will impact:
(select all that apply with boldface)
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify):
Plots may be viewed at: ftp://ftp.as.harvard.edu/pub/exchange/mpayer/1mo_quick_look/v9-01-03c/
Metrics
Global mean OH (from log file): 13.3104192214225 x 105 molec/cm3
Methyl chloroform lifetime: 4.7056 years
Did either of these change by more than 5%? No
At the SURFACE, list all species that changed by 10% or more: PAN, ISOP, ALD2, RCHO, MVK, MACR, PMN, PPN, PRPE, CH2O, N2O5, MP, DMS
Comments on SURFACE differences: The biggest difference were found for MVK and MACR, as they were not deposited in previous versions. The difference in HCHO is about 10%. The differences in organic nitrates are expected due to the supply of OVOCs.
At 500 hPa, list all species that changed by 10% or more: ISOP, ALD2, RCHO, MVK, MACR, PMN, PRPE, N2O5, DMS, NH3, NIT
Comments on 500 hPa differences: Expected.
In the ZONAL MEAN differences, list all species that changed by 10% or more: MVK,MACR,PMN,NH3,NIT
Comments on ZONAL MEAN differences: Expected.
In the EMISSION RATIO maps, list all species that changed by 10% or more: None
Comments on EMISSION RATIO differences:
Additional or summary comments: The small increase in global mean OH is likely due to the small increase of NOx (similar pattern in the difference plots).
Approval
Requires further investigation: No
Approved: Yes (Jingqiu Mao)
Date of approval: 12-19-2011

--Melissa Payer 10:46, 19 December 2011 (EST)

v9-01-03b

Here is the assessment form for 1-month benchmark simulation v9-01-03b.

Description
New features added into GEOS-Chem:
Developer name(s) and institution(s):
  • Acetone: Emily Fischer (Harvard)
  • Retirement of GEIA: Dylan Millet (U. Minnesota)
Version, resolution, met fields used: v9-01-03, GEOS-5 (47L), 4x5
1-month benchmark finished on: Tue Dec 13 12:20:47 EST 2011
Performance statistics:
  • Ran on 8 CPUs of terra-10-c.as.harvard.edu (2.659 GHz x 8 CPU)
  • Wall time: 1:39
  • Scalability: 7.2830
Compared to previous benchmark: v9-01-03a
This update will impact:
(select all that apply with boldface)
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify):
Plots may be viewed at: ftp://ftp.as.harvard.edu/pub/exchange/mpayer/1mo_quick_look/v9-01-03b/
Metrics
Global mean OH (from log file): 13.2811407896285 x 105 molec/cm3
Methyl chloroform lifetime: 4.7161 years
Did either of these change by more than 5%? No
At the SURFACE, list all species that changed by 10% or more: PAN, ACET, R4N2
Comments on SURFACE differences: ACET generally decreases 10-50%, strongest decreases over the oceans due to elimination of the (incorrect) ocean source. Over continental regions, the largest changes are away from terrestrial acetone sources. There are smaller relative changes over the main continental emission regions. PAN decreases by 10-25% over most of the NH oceans, but the absolute differences are very small due to low surface PAN mixing ratios in these regions (< 30 pptv). Weak decreases for R4N2 in a couple spots.
At 500 hPa, list all species that changed by 10% or more: ACET, R4N2
Comments on 500 hPa differences: ACET decreases of 10-25% over many regions at 500hPa. Weak decreases for R4N2 in a couple spots.
In the ZONAL MEAN differences, list all species that changed by 10% or more: ACET, PAN
Comments on ZONAL MEAN differences: Changes exceeding 10% for ACET and PAN, consistent with the above.
In the EMISSION RATIO maps, list all species that changed by 10% or more: ACET
Comments on EMISSION RATIO differences: Changes as expected based on emission updates.
Additional or summary comments:
Approval
Requires further investigation: No
Approved: Yes (--Dbm 11:17, 14 December 2011 (EST))
Yes (--[[User:Emily Fischer] 3:32, 14 December 2011 (EST))
Date of approval: 12-14-2011

--Melissa Payer 13:42, 13 December 2011 (EST)
--Bob Y. 17:06, 14 December 2011 (EST)

v9-01-03a

Here is the assessment form for 1-month benchmark simulation v9-01-03a.

Description
New features added into GEOS-Chem:
Developer name(s) and institution(s):
  • Fabien Paulot (Harvard)
Version, resolution, met fields used: v9-01-03, GEOS-5 (47L), 4x5
1-month benchmark finished on: Wed Dec 7 16:06:38 EST 2011
Performance statistics:
  • Ran on 8 CPUs of terra-04-c.as.harvard.edu (2.925 GHz x 8 CPU)
  • Wall time: 0:57
  • Scalability: 7.4849
Compared to previous benchmark: v9-01-02s
This update will impact:
(select all that apply with boldface)
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify):
Plots may be viewed at: ftp://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/v9-01-03a/
Metrics
Global mean OH (from log file): 13.2473124589166 x 105 molec/cm3
Methyl chloroform lifetime: 4.7300 years
Did either of these change by more than 5%? No
At the SURFACE, list all species that changed by 10% or more: PAN (downwind of South America), ALK4 over oceanic basins, ISOP downwind of South America, MEK tropics, MVK, MACR (downwind of South America), PMN, PPN, PRPE, N2O5, DMS
Comments on SURFACE differences: Sort of makes sense. Changes are in regions that are NOx starved (South America) or cold (the loss from GLPAN will be greatest). Changes are small overall and almost always negative. The changes for DMS are relatively large (10-20% decrease)
At 500 hPa, list all species that changed by 10% or more: ALK4, ISOP, MEK, MVK, MACR, PRPE (large changes in polar regions > 20%), DMS
Comments on 500 hPa differences: Changes are generally bigger than at the surface (temperature dependence of GLPAN)
In the ZONAL MEAN differences, list all species that changed by 10% or more: ISOP (but at high altitude and in polar regions), ALK4 in polar regions, MEK, MVK, MACR, PMN, PRPE
Comments on ZONAL MEAN differences: Small changes overall (in an absolute sense). DMS has the largest change.
In the EMISSION RATIO maps, list all species that changed by 10% or more: none
Comments on EMISSION RATIO differences:
Additional or summary comments:
Approval
Requires further investigation: No
Approved: Yes
Date of approval: Approved 08 Dec 2011

--Bob Y. 11:21, 8 December 2011 (EST)
--Melissa Payer 13:48, 13 December 2011 (EST)