Difference between revisions of "Bugs and fixes"

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(Issues resolved in GEOS-Chem 12.0.0)
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On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.   
 
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.   
  
Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more general information about some frequently encountered errors.  Also visit our [[Currently unresolved issues in GEOS-Chem]] wiki page to see a list of unresolved issues by GEOS-Chem version (and if they have been fixed in subsequent releases).
+
Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more general information about some frequently encountered errors.  Also visit our [[Currently unresolved issues in GEOS-Chem]] and [[Known issues caused by compiler bugs]] wiki pages for more information about unresolved issues.
  
== Issues resolved in GEOS-Chem 12.0.0 ==
+
== Bugs and fixes lists have now been migrated to Github ==
  
----
+
We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/.  We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there.
----
+
 
<big><strong>GEOS-Chem v11-02-final</strong> '''will also carry the designation''' <strong>GEOS-Chem 12.0.0</strong>'''.''' We are migrating to a purely numeric versioning system in order to adhere more closely to software development best practices. For a complete description of the new versioning system, please see [[GEOS-Chem version numbering system|our ''GEOS-Chem version numbering system'' wiki page]].</big>
+
{| border=1 cellspacing=0 cellpadding=5
----
+
|-bgcolor="#CCCCCC"
----
+
!Version
 +
!Released
 +
!colspan="2"|List of bugs and issues (now posted on the listed Github repository)
 +
 
 +
|-valign="top"
 +
|13.0.0
 +
|TBD
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|
 +
*[https://github.com/geoschem/geos-chem/milestone/8 '''Milestone 13.0.0''' (open issues)]
 +
*[https://github.com/geoschem/geos-chem/milestone/8?closed=1 '''Milestone 13.0.0''' (closed issues)]
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.9.0|12.9.0]]
 +
|TBD
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|
 +
*[https://github.com/geoschem/geos-chem/milestone/10 '''Milestone 12.9.0''' (open issues)]
 +
*[https://github.com/geoschem/geos-chem/milestone/10?closed=1 '''Milestone 12.9.0''' (closed issues)]
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.8.1|12.8.1]]
 +
|TBD
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|
 +
*[https://github.com/geoschem/geos-chem/milestone/12 '''Milestone 12.8.1''' (open issues)]
 +
*[https://github.com/geoschem/geos-chem/milestone/12?closed=1 '''Milestone 12.8.1''' (closed issues)]
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.8.0|12.8.0]]
 +
|pending
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|[https://github.com/geoschem/geos-chem/milestone/7?closed=1 '''Milestone 12.8.0''']
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.7.2|12.7.2]]
 +
|09 Mar 2020
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|[https://github.com/geoschem/geos-chem/milestone/11?closed=1 '''Milestone 12.7.2''']
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.7.1|12.7.1]]
 +
|19 Feb 2020
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|[https://github.com/geoschem/geos-chem/milestone/9?closed=1 '''Milestone 12.7.1''']
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.7.0|12.7.0]]
 +
|03 Feb 2020
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|[https://github.com/geoschem/geos-chem/milestone/4?closed=1 '''Milestone 12.7.0''']
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.6.3|12.6.3]]
 +
|25 Nov 2019
 +
|[https://github.com/geoschem/gchp geoschem/gchp]
 +
|[https://github.com/geoschem/gchp/milestone/2?closed=1 '''Milestone 12.6.3''']
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.6.2|12.6.2]]
 +
|15 Nov 2019
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|[https://github.com/geoschem/geos-chem/milestone/6?closed=1 '''Milestone 12.6.2''']
 +
 
 +
|-valign="top"
 +
|[[GEOS-Chem 12#12.6.1|12.6.1]]
 +
|28 Oct 2019
 +
|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|[https://github.com/geoschem/geos-chem/milestone/5?closed=1 '''Milestone 12.6.1''']
 +
 
 +
|-valign="top"
 +
|width="80px"|[[GEOS-Chem 12#12.6.0|12.6.0]]
 +
|width="100px"|18 Oct 2019
 +
|width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem]
 +
|width="400px"|[https://github.com/geoschem/geos-chem/milestone/2?closed=1 '''Milestone 12.6.0''']
 +
 
 +
|}
  
 +
== Issues resolved in GEOS-Chem 12.5.0 ==
  
The bugs and technical issues listed below will be resolved in [[GEOS-Chem 12#12.0.0|GEOS-Chem 12.0.0]], which is under development and should be issued in early August 2018.  Also be sure to visit [[Known issues caused by compiler bugs|our ''Known issues caused by compiler bugs'' wiki page]] for a list of compiler-related issues and workarounds.
+
The bugs and technical issues listed below will be resolved [[GEOS-Chem 12#12.5.0|GEOS-Chem 12.5.0]], release date TBD.
  
 
{| border=1 cellspacing=0 cellpadding=5
 
{| border=1 cellspacing=0 cellpadding=5
 
|-bgcolor="#CCCCCC"
 
|-bgcolor="#CCCCCC"
!width="250px"|Module or area
+
!width="200px"|Module or area
!width="750px"|Issue that was resolved
+
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
  
 
|-valign="top"
 
|-valign="top"
|Aerosols
+
|Chemistry
 
|
 
|
*[[GEOS-Chem_12#Fix_issues_in_complexSOA_and_complexSOA_SVPOA_restart_files|Fix issues in complexSOA and complexSOA_SVPOA restart files]]
+
#[[Stratospheric_chemistry#Bug_fix:_make_sure_stratospheric_BrY_concentrations_are_read_properly_each_month|Bug fix: Make sure stratospheric BrY concentrations are properly read each month]]
 +
#[[FAST-JX_v7.0_photolysis_mechanism#FAST-JX_directory|Add photolysis menu to input.geos for specifying FAST-JX directory]]
 +
#[[GEOS-Chem_12#Corrections_for_CFCs_in_the_chemistry_mechanism|Correction for CFCs in the chemistry mechanism]]
 +
#[[GEOS-Chem_12#Fix_typo_in_CLD_PARAMS_routine_in_gckpp_HetRates.F90|Fix typo in CLD_PARAMS routine in gckpp_HetRates.F90]]
 +
|
 +
#[https://github.com/geoschem/geos-chem-unittest/commit/0588a269376e0f1d8c7acd04f4b954402e31a76a 0588a269]
 +
#[https://github.com/geoschem/geos-chem/commit/03e94fed99cf2bb538dfc59ec514690a122b01a9 03e94fed]
 +
#[https://github.com/geoschem/geos-chem/commit/1b9f69f048243cfb59226a69885ef152bfd33441 1b9f69f0]
 +
#[https://github.com/geoschem/geos-chem/commit/95d124e0302d46d64f51ac4ff8db57febb81dda9 95d124e0]
 +
 
 +
|-valign="top"
 +
|Diagnostics
 +
|
 +
#[[List_of_diagnostics_archived_to_netCDF_format#Sample_HISTORY.rc_diagnostic_input_file|Enable GEOS-Chem "Classic" netCDF (History) diagnostics to be subsetted vertically and horizontally]]
 +
#[[GEOS-Chem 12#Enable accurate cloud pH diagnostic calculation|Enable accurate cloud pH diagnostic calculation via post-processing ]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/6acd4ce393d9fdc4be8e8a70a532e6391f54b218 6acd4ce3]
 +
#[https://github.com/geoschem/geos-chem/pull/37/commits/1c15e54ad1c4f34ecdbb03266716c992001c8cc5 1c15e54a]
 +
 
 +
|-valign="top"
 +
|Structural updates
 +
|
 +
#Add optional capability to compile GEOS-Chem Classic and GCHP using CMake
 +
|
 +
#[https://github.com/geoschem/gchp/pull/27/commits pull/27]
 +
 
 +
|-valign="top"
 +
|Emissions
 +
|
 +
#Fixes for GFED4 biomass burning emissions, including:
 +
#*Change the HEMCO cycling flag so that the model crashes if it doesn't find the right GFED year
 +
#*Remove the 27% scaling of POG to POA and emit 1:1 instead
 +
|
 +
#[https://github.com/geoschem/geos-chem-unittest/commit/3813a6fbd8a016842b16d7daa81f623d3d4edeb6 381386fb]
 +
 
 +
|-valign="top"
 +
!colspan="3" bgcolor="#CCFFFF"|Fixes affecting GCHP only:
 +
 
 +
|-valign="top"
 +
|Structural updates
 +
|
 +
#Update GCHP to use MAPL v1.0.0 and ESMF v8.0.0 beta snapshot 28
 +
#*Will introuduce faster parallel I/O
 +
#*Will enable full use of gfortran compiler
 +
|
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 17:03, 15 July 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.4.0 ==
 +
 
 +
The bugs and technical issues listed below will be resolved [[GEOS-Chem 12#12.4.0|GEOS-Chem 12.4.0]], release date TBD.
 +
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
 +
 
 +
|-valign="top"
 +
|Photolysis
 +
|
 +
#[[FAST-JX_v7.0_photolysis_mechanism#Further_fix_added_in_12.4.0|Bug fix: Rebuild chemical mechanisms for FAST-JX fix added in 12.3.2]]
 +
#[[FAST-JX_v7.0_photolysis_mechanism#FAST-JX_directory|Add photolysis menu to input.geos for specifying FAST-JX directory]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/fcd0cfba13d63ee0b94c8fd06d29f6e49156aff6 fcd0cfba]
 +
#[https://github.com/geoschem/geos-chem-unittest/commit/d34a9cd29f1272d85cd1355183ca02373f0b2ee8 d34a9cd2]
 +
 
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 17:04, 15 July 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.3.2 ==
 +
 
 +
The bugs and technical issues listed below will be resolved [[GEOS-Chem 12#12.3.2|GEOS-Chem 12.3.2]].
 +
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
  
 
|-valign="top"
 
|-valign="top"
 
|Chemistry
 
|Chemistry
 
|
 
|
*[[GEOS-Chem 12#Add PH2O2 to the default list of prod/loss families in the KPP mechanisms|Add P(H2O2) to the default list of prod/loss families in the KPP mechanisms]]
+
#[[GEOS-Chem 12#Inconsistency in H2402 concentrations in GCHP vs GEOS-Chem Classic|Fix inconsistency for species H2402 between GCHP and GEOS-Chem "Classic"]]
*[[GEOS-Chem_12#Bug_fix_for_liquid_water_content_in_gckpp_HetRates.F90|Bug fix for liquid water content in gckpp_Hetrates.F90]]
+
|
*[[GEOS-Chem_12#Fixed_typo_in_call_to_GAMMA_HOBr_AER|Fixed typo in call to GAMMA_HOBr_AER (in KPP module gckpp_HetRates.F90)]]
+
#[https://github.com/geoschem/geos-chem/releases/tag/12.3.2 rel/12.3.2]
*[[Organics_Working_Group#Add_missing_Criegee_intermediate_reaction|Add missing Criegee intermediate reaction]]
+
*[[GEOS-Chem_12#Bug_fix_for_CH4_boundary_conditions|Bug fix for CH4 boundary conditions]]
+
*[[FlexChem#FlexChem bug fix: do not zero ACTA, EOH, HCOOH|Bug fix in FlexChem: do not zero out ACTA, EOH, HCOOH concentrations]]
+
  
 
|-valign="top"
 
|-valign="top"
|Diagnostics
+
|Photolysis
 
|
 
|
*[[Planeflight_diagnostic#Stop_with_error_if_the_plane_type_is_not_specified_in_Planeflight.dat|Planeflight diagnostic fix: Stop with error if the plane type is not specified in Planeflight.dat]]
+
#[[FAST-JX_v7.0_photolysis_mechanism#Duplicate_entries_for_species_ClNO2_in_FJX_j2j.dat_file|Remove duplicate entry for species ClNO2 in the FJX_j2j.dat file]]
*[[#Bug fix for reference time in netCDF diagnostic files|Bug fix for reference time in netCDF diagnostic files]]
+
#[[FAST-JX_v7.0_photolysis_mechanism#Species_DHDC_was_not_listed_as_photolyzing_in_the_species_database|Species DHDC was not listed as photolyzing in the GEOS-Chem species database]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/releases/tag/12.3.2 rel/12.3.2]
 +
#[https://github.com/geoschem/gchp/commit/d7c48d144707aa25ac65bb7270466864e0559a0f d7c48d14]
 +
 
 +
|-
 +
!colspan="3" bgcolor="#CCFFFF"|Fixes affecting GCHP only:
  
 
|-valign="top"
 
|-valign="top"
 
|Emissions
 
|Emissions
 
|
 
|
*Update to HEMCO v2.1.007, which includes minor updates:
+
#Disable Br2 offline seasalt emissions to match GEOS-Chem Classic default
*#[[Implementation of HEMCO in GEOS-Chem#Stop with error if multiple containers have the same name|Stop with error if multiple containers have the same name]]
+
#Fix HEMCO diagnostics settings for lightning NO and seasalt emissions
*#[[Implementation of HEMCO in GEOS-Chem#Bug fix for distributing emissions in the vertical dimension|Bug fix for distributing emissions in the vertical dimension]]
+
|
*#[[Implementation of HEMCO in GEOS-Chem#Add extra error checks in HEMCO standalone module|Add extra error checks in HEMCO standalone module]]
+
#[https://github.com/geoschem/gchp/commit/f6ac477ad7637d7cfc4a6f2d479fd2509ecca9ef f6ac477a]
*#[[Implementation of HEMCO in GEOS-Chem#Remove null string character from netCDF unit string|Remove null string character from netCDF unit string for GEOS-Chem "Classic" simulations]]
+
#[https://github.com/geoschem/gchp/commit/cda5044e9c8430954fc6a0d550553f9f9a80bb33 cda5044e]
*#[[Implementation_of_HEMCO_in_GEOS-Chem#Bug fix for HEMCO soil NOx error with ifort 17|Bug fix for HEMCO soil NOx error with ifort 17]]
+
 
*Correct issues when specifying [[DICE-Africa anthropogenic emissions inventory|DICE-Africa emissions]]:
+
|}
*#[[DICE-Africa_anthropogenic_emissions_inventory#Avoid_double-counting_between_DICE-Africa_and_other_inventories|Avoid double-counting between DICE-Africa and other inventories]]
+
 
*#[[DICE-Africa_anthropogenic_emissions_inventory#Use_unique_names_for_DICE-Africa_entries_in_HEMCO_Config.rc|Use unique names for DICE-Africa entries in the <tt>HEMCO_Config.rc</tt> file]]
+
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 16:37, 15 July 2019 (UTC)
*Updates for [[QFED biomass burning emissions]]:
+
 
*#[[QFED biomass burning emissions#Update to QFED v2.5r1|Update to QFED v2.5r1]]
+
== Issues resolved in GEOS-Chem 12.3.1 ==
*#[[QFED_biomass_burning_emissions#Fix_QFED_files_for_2016.2F10.2F13|Fix QFED v2.4r6 files for 2016/10/13]]
+
 
*[[GEOS-Chem 12#Avoid double counting CEDS and GEIA NH3 biofuel emissions|Avoid double counting CEDS and GEIA NH3 biofuel emissions]]
+
The bugs and technical issues listed below were resolved [[GEOS-Chem 12#12.3.1|GEOS-Chem 12.3.1]] (release 08 Apr 2019).
*[[Ship_emissions#Fix_bug_in_ARCTAS_SHIP_SO2_scale_factors|Bug fix for ARCTAS_SHIP in <tt>HEMCO_Config.rc</tt> files]]
+
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
  
 
|-valign="top"
 
|-valign="top"
|Specialty simulations
+
|Diagnostics
 
|
 
|
*[[Coupling_GEOS-Chem_with_RRTMG#Bug_fixes_for_RRTMG_in_v11-02|Bug fixes for v11-02 simulations using the RRTMG radiative transfer model]]
+
#[[Planeflight_diagnostic#Planeflight_diagnostic_now_writes_out_data_for_the_last_timestep_of_the_day|Planeflight diagnostic now writes out data for the last timestep of the day]]
 +
#[[List_of_diagnostics_archived_to_netCDF_format#The_JValuesLocalNoon_collection|Fix the netCDF diagnostic for noontime J-values]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/04da94cdbe01c9032904a9f7d14ec3a5aded5aee 04da94cd]
 +
#[https://github.com/geoschem/gchp/commit/f4d43b7ace1d74adc2b8aed1bcd7b4d33a594878 f4d43b7a]
  
 
|-valign="top"
 
|-valign="top"
|Structural updates
+
|Structural
 
|
 
|
*Now always declare the netCDF time variable with an unlimited dimension
+
#[[Stratospheric_chemistry#Do not allocate memory to array MINIT in strat_chem_mod.F90|Do not allocate memory to array MINIT in <tt>strat_chem_mod.F90</tt>]]
 +
#[[GEOS-Chem_12#Declare_State_Met.25AREA_M2_as_2-dimensional.2C_not_3-dimensional|Declare <tt>State_Met%Area_M2</tt> as 2-dimensional, not 3-dimensional]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/729fd2a7ed79b8a6a4a7fd6231097fbb1c4baf21 729fd2a7]
 +
#[https://github.com/geoschem/gchp/commit/e4af25f3b893263d1236c3a35c64e2e46f2e78cb e4af25f3b]
  
 
|}
 
|}
  
== Issues resolved in GEOS-Chem v11-02 ==
+
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 20:06, 16 July 2019 (UTC)
  
----
+
== Issues resolved in GEOS-Chem 12.3.0 ==
----
+
<big><strong>GEOS-Chem v11-02-final</strong> '''will also carry the designation''' <strong>GEOS-Chem 12.0.0</strong>'''.'''  We are migrating to a purely numeric versioning system in order to adhere more closely to software development best practices. For a complete description of the new versioning system, please see [[GEOS-Chem version numbering system|our ''GEOS-Chem version numbering system'' wiki page]].</big>
+
----
+
----
+
  
 +
The bugs and technical issues listed below were resolved [[GEOS-Chem 12#12.3.0|GEOS-Chem 12.3.0]] (release date TBD).
  
The bugs and technical issues listed below were resolved in [[GEOS-Chem v11-02]] (aka 12.0.0).  Also be sure to visit [[Known issues caused by compiler bugs|our ''Known issues caused by compiler bugs'' wiki page]] for a list of compiler-related issues and workarounds.
+
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
 +
 
 +
|-valign="top"
 +
|Diagnostics / Restart files
 +
|
 +
#[[#Further_bug_fix_to_prevent_incorrect_restart_file_output_when_spanning_leap_year_days|Further bug fix for netCDF diagnostics spanning leap years]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/fb093d61b8321834d5f1d9565760e2828138b321 fb093d61]
 +
 
 +
|-valign="top"
 +
|Emissions
 +
|
 +
#[[HEMCO_versions#Bug_fixes_for_HEMCO_interpolation_algorithm|Bug fixes for the HEMCO interpolation algorithm]]
 +
#[[HEMCO_versions#Updates from the NASA GEOS development branch|Updates from the NASA GEOS development branch]]
 +
#[[HEMCO_versions#Add_option_to_always_use_simulation_year_for_specified_fields|Add option to always use simulation year for specified fields]]
 +
#[[HEMCO_versions#Prevent zero emissions for MEGAN_Mono extension species|Prevent zero emissions for MEGAN_Mono extension species]]
 +
#[[HEMCO_versions#Updates to the volcanic emissions extension|Updates to the volcanic emissions extension]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/e947fc8027b75eaa4ff5e22b65f046728b5ee7fb e947fc80]
 +
#[https://github.com/geoschem/geos-chem/commit/7df3fc8eefd47b8835335bd5c48f469d5c7e4385 7df3fc8e]
 +
#[https://github.com/geoschem/geos-chem-unittest/commit/23189032720058b34d7b8140aac52989cfe4c1ee 23189032]
 +
#[https://github.com/geoschem/geos-chem/commit/af86c4ddc10e240662a572d8542292b2d30f5cc7 af86c4dd]
 +
#[https://github.com/geoschem/geos-chem/commit/07c103190221e1d77feaa97dfdd71749767c248a 07c10319]
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 15:53, 21 March 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.2.1 ==
 +
 
 +
The bugs and technical issues listed below were resolved [[GEOS-Chem 12#12.2.1|GEOS-Chem 12.2.1]] (release date 28 Feb 2019).
  
 
{| border=1 cellspacing=0 cellpadding=5
 
{| border=1 cellspacing=0 cellpadding=5
 
|-bgcolor="#CCCCCC"
 
|-bgcolor="#CCCCCC"
!width="250px"|Module or area
+
!width="200px"|Module or area
!width="750px"|Issue that was resolved
+
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
  
 
|-valign="top"
 
|-valign="top"
|Chemistry
+
|Diagnostics / Restart files
 +
|
 +
#[[GEOS-Chem 12#Bug fix: netCDF diagnostic collections with frequency "End" now properly span leap year days|Bug fix: netCDF diagnostic collections with frequency "End" now properly span leap year days]]
 
|
 
|
*[[FlexChem#Add_simplified_P.2FL_families_to_KPP|(v11-02a) Add simplified prod/loss families to KPP to gain computational speedup]]
+
#[https://github.com/geoschem/geos-chem/commit/ca68f508b956a24663cf49722b437c638e9e9c6f ca68f508]
*[[Chemistry_Issues#Fixes_to_correct_ALK4_lumping_issue|(v11-02a) Fixes to correct ALK4 lumping issue]]
+
*[[Sulfate_aerosols#Fix_bug_in_CHEM_NIT_routine|(v11-02a) Fix bug in CHEM_NIT routine]]
+
*[[Sulfate_aerosols#Fix_error_in_production_of_SO4s.2C_NITs_in_SEASALT_CHEM_routine|(v11-02a) Fix error in production of SO4s and NITs in SEASALT_CHEM routine]]
+
*[[Sulfate_aerosols#Fix_for_sulfate_production_in_HET_DROP_CHEM|(v11-02a) Fix for sulfate production in HET_DROP_CHEM]]
+
*[[Sulfate_aerosols#Fix_bugs_in_sulfate_chemistry_routines|(v11-02a) Fix bugs in sulfate chemistry routines]]
+
*[[Chemistry_Issues#Fixes_for_carbon_creating_reactions|(v11-02c) Add fixes to chemical mechanism to preserve total carbon]]
+
*[[PAN#Bug_fixes_for_EOH_and_MGLY|(v11-02c) Fix bugs for EOH and MGLY following implementation of PAN updates in v11-02a]]
+
*[[UCX_chemistry_mechanism#Fix_bug_impacting_dust_radius_obtained_in_RDUST_ONLINE|(v11-02d) Fix bug impacting dust radii obtained in RDUST_ONLINE]]
+
*[[GEOS-Chem_v11-02#Add_fix_for_IPMN_reactions_contributing_to_high_P.28Ox.29_and_L.28NOx.29|(v11-02d) Fixed IMPN reactions that contributed to high P(Ox) and L(Ox)]]
+
*[[GEOS-Chem_v11-02#Add_bug_fixes_for_GLYX.2C_MGLY.2C_IEPOX.2C_and_IMAE_heterogeneous_chemistry_added_in_v11-02c|(v11-02d) Fixed bugs in GLYX, MGLY, IEPOX, and IMAE heterogeneous chemistry]]
+
*[[ISORROPIA_II#Bug_fixes_for_ISORROPIA_II_stable_mode|(v11-02e) Bug fixes for ISORROPIA II stable mode]]
+
*[[GEOS-Chem_v11-02#Remove_MONX_from_chemical_mechanisms|(v11-02e) Remove MONX from chemical mechanisms]]
+
*[[Secondary_organic_aerosols#Add_MTPO_as_an_advected_and_chemical_species_to_all_full-chemistry_simulations|(v11-02e) Add MTPO to all full-chemistry simulations]]
+
*[[Secondary_organic_aerosols#SOA_formation_from_aqueous_isoprene_uptake|(v11-02e) Always use SOA formation from aqueous isoprene uptake (remove input switch)]]
+
*[[Halogen_chemistry_mechanism#Fixes_in_gckpp_HetRates.F90_following_implementation_in_v11-02d|(v11-02e) Fixes for KPP heterogenous chemistry module for halogen chemistry mechanism]]
+
*[[Secondary_organic_aerosols#Fixes_for_isoprene_SOA_for_consistency_with_Marais_et_al._.282016.29|(v11-02e) Fixes for isoprene SOA for consistency with Marais et al  (2016)]]
+
*[[UCX_chemistry_mechanism#v11-02|(v11-02e) Remove UCX 2-D initial boundary conditions option]]
+
*[[UCX_chemistry_mechanism#Fix_for_UCX_mesospheric_NOy_routine|(v11-02f) Fix for UCX mesospheric NOy routine]]
+
*[[Halogen_chemistry_mechanism#Fix_for_N2O5_uptake|(v11-02f) Fix for N2O5 update]]
+
*[[GEOS-Chem_v11-02#Fix_for_organic_nitrate_chemistry|(v11-02f) Fix for organic nitrate chemistry]]
+
*[[GEOS-Chem_v11-02#KPP_errors_with_halogen_chemistry_and_tropchem-based_mechanisms|(v11-02f) Change tolerance value as a temporary fix for convergence errors in 2x2.5 tropchem simulation]]
+
  
*[[Secondary_organic_aerosols#Only add ISOAAQ species to OCPISOA when using the complex SOA option|(v11-02-rc) Only add ISOAAQ species to OCPISOA when using the complex SOA option]]
+
|-valign="top"
*[[Secondary_organic_aerosols#Only_add_ISOAAQ_species_to_PM2.5_diagnostics_for_simulations_using_the_complex_SOA_option|(v11-02-rc) Only add ISOAAQ species to the PM2.5 diagnostics when using the Complex SOA option]]
+
|CO2 simulation
 +
|
 +
#[[CO2_simulation#Prevent_double-counting_in_CO2_chemical_source|Fix for CO2 simulation chemical source]]
 +
|
 +
#N/A
  
 
|-valign="top"
 
|-valign="top"
|[[Cloud convection]]
+
|TOMAS simulations
 
|
 
|
*[[Cloud_convection#Computational_bottleneck_in_the_v11-01_convection_module|(v11-02a) Remove computational bottleneck in the convection module]]
+
#[[TOMAS_aerosol_microphysics#Restore_DST1.2C_DST2.2C_DST3.2C_and_DST4_in_TOMAS_simulations|Restore DST1, DST2, DST3, and DST4 in TOMAS simulations]]
 +
|
 +
#[https://github.com/geoschem/geos-chem-unittest/commit/5ed3e9cf3bdccfd7b144b5d768e64d0059357a7b 5ed3e9cf]
 +
 
 +
|-
 +
!colspan="3" bgcolor="#CCFFFF"|Fixes affecting GCHP only:
  
 
|-valign="top"
 
|-valign="top"
|[[CO2 simulation]]
+
|Emissions etc.
 
|
 
|
*[[CO2 simulation#CO2_emissions_unit_conversion_not_consistent_with_new_advection_pressure|(v11-02b) CO2 emissions unit conversion was not consistent with the new advection pressure]]
+
#[[GEOS-Chem_12#Use_online_sea_flux_emissions_by_default_in_GCHP|Use online sea flux emissions by default in GCHP]]
 +
#[[GEOS-Chem_12#GCHP_uses_outdated_MODIS_files_missing_projection_error_fix|Update MODIS LAI source directory to match GEOS-Chem Classic]]
 +
|
 +
#[https://github.com/geoschem/gchp/commit/9759d26bcbbb593f6e845a0dc67e1b7bde4b6410 9759d26b]
 +
#N/A
 +
 
 +
|-valign="top"
 +
|Met fields
 +
|
 +
#[[GEOS-Chem_12#Missing_scaling_factors_for_MERRA-2_simulations_with_GCHP|Missing scaling factors for MERRA-2 simulations with GCHP]]
 +
|
 +
#?
 +
 
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 17:03, 15 July 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.2.0 ==
 +
 
 +
The bugs and technical issues listed below were resolved [[GEOS-Chem 12#12.2.0|GEOS-Chem 12.2.0]] (release date 19 Feb 2019).
 +
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
  
 
|-valign="top"
 
|-valign="top"
 
|Diagnostics
 
|Diagnostics
 
|
 
|
*[[Particulate_matter_in_GEOS-Chem#Save_out_PM2.5_diagnostic_at_STP_conditions|(v11-02a) Save out PM2.5 diagnostic at STP conditions]]
+
#[[GEOS-Chem_12#Fix_bug_in_stratosperic_aerosol_surface_area_netcdf_diagnostics|Fix bug in stratospheric aerosol surface area in netCDF diagnostics]]
*[[GEOS-Chem_v11-01#Bugs_in_convective_flux_diagnostics_.28ND14.29|(v11-02a) Bug fixes in convective flux diagnostics (ND14)]]
+
|
*[[GEOS-Chem_v11-01#P.28OH.29_not_saved_out_in_ND22_diagnostic|(v11-02a) Restore P(OH) in ND22 diagnostic]]
+
#[https://github.com/geoschem/geos-chem/commit/e4fecf01c87aa76169751c6e0a515ee717573121 e4fecf01]
*[[Implementation_of_HEMCO_in_GEOS-Chem#Make_anthropogenic_emissions_diagnostics_3D|(v11-02a) Make anthropogenic emissions diagnostics 3D]]
+
 
*[[Tagged_CO_simulation#Fix_ND65_bugs_in_tagged_CO_simulation|(v11-02a) Fix ND65 bugs in tagged CO simulation]]
+
|-
*[[Mineral_dust_aerosols#Bug_in_ND21_diagnostic_indexing_for_size-resolved_dust_species|(v11-02a) Fix bug in ND21 diagnostic indexing for dust species]]
+
!colspan="3" bgcolor="#CCFFFF"|Fixes affecting GCHP only:
*[[GEOS-Chem_v11-02#ND40_planeflight_diagnostic_not_always_written_out_when_turned_on|(v11-02b) Always write out ND40 planeflight diagnostic when enabled]]
+
*[[GEOS-Chem v11-02#Bug fixes for the ND50 timeseries diagnostic|(v11-02c) Bug fixes for the ND50 timeseries diagnostic]]
+
*[[Stratospheric_chemistry#STE_fluxes|(v11-02c) Fix the STE diagnostics and use them in the standard benchmarking procedure]]
+
*[[Secondary_organic_aerosols#Fix_diagnostics_bugs_in_the_SOA-SVPOA_simulation|(v11-02c) Fix diagnostic bugs in the SOA-SVPOA simulation]]
+
*[[GEOS-Chem_v11-02#Fixes_for_two_new_ND21_binary_diagnostics_introduced_in_v11-02|(v11-02e) Fixes for two new ND21 binary diagnostics introduced in v11-02]]
+
*[[Secondary_organic_aerosols#Calculation_of_PM2.5.2C_AOD.2C_and_aerosol_mass|(v11-02e} Always use simple SOA in computation of PM2.5 and AOD]]
+
  
 
|-valign="top"
 
|-valign="top"
|Date and time (and related quantities)
+
|Restart files
 
|
 
|
*[[GEOS-Chem_v11-01#Bug_in_cos.28SZA.29_for_start_of_timestep|(v11-02a) Fixed bug in computation of cosine of solar zenith angle]]
+
#[[GEOS-Chem_12#GCHP_Bug_fix:_use_checkpoint_output_file_as_subsequent_run_restart|GCHP bug fix: Use checkpoint output as the subsequent restart file]]
 +
|
 +
#
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 20:02, 14 March 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.1.1 ==
 +
 
 +
The bugs and technical issues listed below were resolved in [[GEOS-Chem 12#12.1.1|GEOS-Chem 12.1.1]], which was released on 13 Dec 2018.
 +
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
  
 
|-valign="top"
 
|-valign="top"
|[[Dry deposition|Dry]] and [[Wet deposition|wet deposition]]
+
|Compilation issues
 
|
 
|
*[[Dry_deposition#Bug_in_computation_of_aerodynamic_resistance_RA|(v11-02a) Fix bug in computation of dry deposition aerodynamic resistance Ra]]
+
#[[GEOS-Chem_12#Always_enable_BCPH_TPBC_to_allow_saving_out_BC_files_in_global_simulations|Always enable BPCH_TPBC to allow saving out BC files in global simulations]]
*[[Aerosol_emissions#Bug_fix_for_MOPO_and_MOPI_definitions_in_species_database|(v11-02c) Fix bug in species definitions for marine POA simulation]]
+
#[https://github.com/geoschem/geos-chem/commit/096ad29d02afbdba64a5dd138df0c976ddee3140 Add hco_interface_mod.o to list of dependencies for get_met_mod.o and only compile get_met_mod.F90 and flexgrid_mod.F90 for GEOS-Chem "Classic"]
*[[GEOS-Chem_v11-02#Fix_dust_rainout_settings_to_match_BCPO|(v11-02e) Fix dust rainout settings to match that of hydrophobic BC (aka BCPO)]]
+
#[https://github.com/geoschem/geos-chem/commit/f9b2f19593afeaa396ff3ee3d315148d5a6f8600 Add flexgrid_read_mod.o to list of dependencies for hcoi_gc_main_mod.o]
*[[Physical_properties_of_GEOS-Chem_species#Fix_Henry.27s_law_parameters_for_HCl|(v11-02f) Fix Henry's law parameters for HCl]]
+
|
 +
#[https://github.com/geoschem/geos-chem/commit/072ec9d61580105bcfa755081bc5d238e1b3f60d 072ec9d6]
 +
#[https://github.com/geoschem/geos-chem/commit/096ad29d02afbdba64a5dd138df0c976ddee3140 096ad29d]
 +
#[https://github.com/geoschem/geos-chem/commit/f9b2f19593afeaa396ff3ee3d315148d5a6f8600 f9b2f195]
  
 
|-valign="top"
 
|-valign="top"
|[[HEMCO|Emissions (via HEMCO)]]
+
|Diagnostics
 
|
 
|
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02a|(v11-02a) Update to HEMCO v2.0.004]]
+
#[[GEOS-Chem_12#Skip_planeflight_observations_outside_a_nested_domain|Skip planeflight observations outside a nested domain]]
*[[EPA/NEI11_North_American_emissions#Default_US_emissions_to_NEI2011_after_2013|(v11-02a) Default US emissions to NEI2011 after 2013]]
+
|
*[[Implementation_of_HEMCO_in_GEOS-Chem#Fixed_bug_in_computation_of_local_time_in_HCO_GetSuncos|(v11-02a) Fixed bug in computation of local time in the HEMCO routine <tt>HCO_GetSuncos</tt>]]
+
#[https://github.com/geoschem/geos-chem/commit/f6f90fd404cae1f911277f27f7a4fcb15b3bb039 f6f90fd4]
*[[Acetone#Fix_acetone_parameterization_in_hcox_seaflux_mod.F90|(v11-02a) Fix acetone parameterization in hcox_seaflux_mod.F90]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Read_default_DEP_RESERVOIR_fields_from_file_when_not_found_in_HEMCO_restart_file|(v11-02a) Change DEP_RESERVOIR time cycling option to C]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Now_use_YYYYMMDDhhmm_format_for_time_stamp_values|(v11-02c) Now use <tt>YYYYMMDDhhmm</tt> for time stamp values]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Avoid_segmentation_fault_in_DustGinoux_extension|(v11-02c) Add error trap in to avoid a segmentation fault when the DustGinoux extension is turned off]]
+
*[[Mercury#Bug_fixes_for_Hg_emissions|(v11-02c) Bug fixes for Hg emissions]]
+
*[[Secondary_organic_aerosols#Update_simple_SOA_entries_in_HEMCO_to_follow_MTPA.2BLIMO.2BMTPO|(v11-02e) Update simple SOA entries in HEMCO_Config.rc to follow MTPA+LIMO+MTPO]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02e|(v11-02e) Fix bug in HEMCO reference time algorithm]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v11-02f|(v11-02f) Update from HEMCO v2.1.001 to 2.1.005]]
+
*[[Biomass_burning_emissions#Fix_bug_in_biomass_burning_emissions_when_GFED_is_turned_off|(v11-02f) Fix bug in biomass burning when GFED is turned off]]
+
*[[RCP_future_emissions_scenarios#Fix_missing_HCOOH_factors_for_RCP_in_HEMCO_Config.rc|(v11-02f) Fix missing HCOOH factors for RCP scenarios in HEMCO_Config.rc file]]
+
*(v11-02-rc) Turn off XIAO inventory to avoid double-counting anthropogenic propane emissions]]
+
  
 
|-valign="top"
 
|-valign="top"
|Fixes to facilitate running GEOS-Chem in HPC environments
+
|Tagged CO simulation
 +
|
 +
#[[Tagged CO simulation#Do not multiply emission timestep by 60|Bug fix for tagged CO: don't multiply emissions timestep by 60]]
 
|
 
|
*[[UCX_chemistry_mechanism#Bug_fixes_for_running_UCX_in_ESMF_environment|(v11-02a) Bug fixes for using UCX chemistry in the ESMF environment]]
+
#[https://github.com/geoschem/geos-chem/commit/8a1b078e337edfa5fdfb0a5d9ca636b6d0c0634a 8a1b078e]
 +
 
 +
|-
 +
!colspan="3" bgcolor="#CCFFFF"|Fixes affecting GCHP only:
  
 
|-valign="top"
 
|-valign="top"
|[[Nested Model Working Group|Nested-grid simulations]]
+
|Transport (FvDycore)
 
|
 
|
*[[Mercury#Fixed_typo_in_nested_grid_transport_routine_INIT_WINDOW|(v11-02a) Fixed typo in nested-grid transport routine <tt>INIT_WINDOW</tt>]]
+
#[[GEOS-Chem_12#GCHP_transport_fix_to_prevent_instant_propagation_from_troposphere_to_stratosphere|GCHP transport fix to prevent instant propagation from troposphere to stratosphere]]
 +
|
 +
 
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 14:12, 16 July 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.1.0 ==
 +
 
 +
The bugs and technical issues listed below were resolved in [[GEOS-Chem 12#12.1.0|GEOS-Chem 12.1.0]], which was released on 26 Nov 2018.
 +
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
  
 
|-valign="top"
 
|-valign="top"
|[[Mercury|Mercury simulation]]
+
|CH4 simulation
 
|
 
|
*(v11-02-rc) Minor fixes (including updated parameters) for the [[Mercury]] simulation.
+
#[[CH4_simulation#Add_fixes_for_seasonal_scale_factors_in_CH4_simulations|Add fixes for seasonal scale factors in CH4 simulations]]
 +
|
 +
#[https://github.com/geoschem/geos-chem-unittest/commit/6f48d04570ea616a0c39f8dd02c2c902e6183393 6f48d045]
  
 
|-valign="top"
 
|-valign="top"
|[[Overview_of_GMAO_met_data_products|Meteorological fields]]
+
|Chemistry and Photolysis
 
|
 
|
*[[GEOS-Chem v11-02#Add MERRA2 to #if and #elif statements where it had been omitted|(v11-02c) Add MERRA2 to <tt>#if</tt> and <tt>#elif</tt> statements where it had been omitted]]
+
#[[FAST-JX_v7.0_photolysis_mechanism#Allow_for_SZA_to_98_degrees_when_getting_photolysis_rates|Allow for SZA to 98 degrees when getting photolysis rates]]
*[[Downloading_GEOS-Chem_source_code_and_data#Inconsistency_in_GEOS-FP_files_at_Harvard_and_Dalhousie_for_July_2013|(v11-02e) Sync GEOS-FP met field files on Harvard FTP with those at Dalhousie]]  
+
#[[GEOS-Chem_v11-02#Code_cleanup_suggestions|Move Fast-JX .dat files from the <tt>geos-chem-unittest</tt> repository to <tt>gcgrid/ExtData</tt>]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/d06ae04ad44defd15854a9c4dadd36923dee0498 d06ae04a]
 +
#[https://github.com/geoschem/geos-chem/commit/03e94fed99cf2bb538dfc59ec514690a122b01a9 03e94fed]
  
 
|-valign="top"
 
|-valign="top"
|[[The NcdfUtilities package|netCDF]] and file I/O issues
+
|Emissions
 +
|
 +
#[[CEDS_anthropogenic_emissions#Add_missing_RCO_sector_to_CEDS_emissions_entries|Add missing RCO sector to CEDS emissions entries]]
 +
#[[CEDS_anthropogenic_emissions#Include_CEDS_ship_emissions|Include CEDS ship emissions as default global ship emissions inventory]]
 +
#[[CEDS_anthropogenic_emissions#Reduce_file_size_for_CEDS_inventory|Reduce file size for CEDS inventory]]
 +
#[[Implementation_of_HEMCO_in_GEOS-Chem#Bug_fix:_Read_data_with_the_.22E.22_cycle_flag_just_once|HEMCO bug fix: prevent excessive attempts to read the HEMCO restart file when using GEOS-Chem "Classic"]]
 +
#[[Implementation_of_HEMCO_in_GEOS-Chem#Add_fix_for_collapsing_model_levels_to_reduced_grid|Add fix for collapsing model levels to reduced grid]]
 +
#[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_unit_conversion_in_HCO_UNIT_GetAreaScal|Fix unit conversion in HCO_UNIT_GetAreaScal]]
 
|
 
|
*[[The NcdfUtilities package#Routine DO_ERR_OUT now returns a non-zero error code|(v11-02a) Routine <tt>DO_ERR_OUT</tt> now returns a non-zero error code]]
+
#[https://github.com/geoschem/geos-chem-unittest/commit/642dd0af874e9ddfa87d096158a61f1d9f9c0fe6 642dd0af]
*[[The NcdfUtilities package#Enable_compression_in_netCDF-4_output_files|(v11-02a) Enable data compression in netCDF-4 output files]]
+
#[https://github.com/geoschem/geos-chem-unittest/commit/e71d0d6754faeed0adcfc9ed94846677551337f3 e71d0d67]
*[[Implementation of HEMCO in GEOS-Chem#HEMCO diagnostic and restart files now have an unlimited time dimension|(v11-02a) HEMCO diagnostic and restart files now have an unlimited time dimension]]
+
#[https://github.com/geoschem/geos-chem-unittest/commit/20451cb47bf8dace9b9fc7878bca6720b6fe3a56 20451cb4]
 +
#[https://github.com/geoschem/geos-chem/commit/3f62e74954136cbbabda166a453cbd3811689ac4 3f62e749]
 +
#[https://github.com/geoschem/geos-chem/commit/820b8d7d9b25a50f79cf6688a359c9dcc91d8c2b 820b8d7d]
 +
#[https://github.com/geoschem/geos-chem/commit/7dfd99da3d750046dc08478978b3f2cbd0a31018 7dfd99da]
  
 
|-valign="top"
 
|-valign="top"
|[[Rn-Pb-Be simulation|Rn-Pb-Be simulation]]
+
|PBL Mixing
 
|
 
|
*[[Rn-Pb-Be_simulation#Vertical_Grid|(v11-02e) The Rn-Pb-Be simulation now uses 72 vertical levels by default]]
+
#[[Boundary_layer_mixing#Mass_is_not_conserved_when_using_non-local_PBL_mixing|Fix mass conservation in non-local PBL mixing]]
 +
|
 +
#[https://github.com/geoschem/geos-chem-unittest/commit/57c75178c4f9b809c5abca5e3b236c3db7889669 57c75178]
  
 
|-valign="top"
 
|-valign="top"
|Structural issues
+
|Tagged CO simulation
 
|
 
|
*[[ISORROPIA_II#Implement_ISORROPIA_v2.0_as_a_Fortran_module|(v11-02a) Implement ISORROPIA v2.0 as a Fortran module (eliminating <code>COMMON</code> blocks)]]
+
#[[GEOS-Chem_12#Update_HEMCO_configuration_file_for_tagged_CO_simulation|Update HEMCO configuration file for the tagged CO simulation]]
*[[GEOS-Chem_Makefile_Structure#Bug_fix:_Specifying_NO_REDUCED.3Dno_now_compiles_GEOS-Chem_for_reduced_grids|(v11-02a) Bug fix: Specifing <tt>NO_REDUCED=no</tt> now compiles GEOS-Chem for reduced grids]]
+
|
*[[GEOS-Chem_Makefile_Structure#Removed_the_COMPILER_variable_from_Makefile_header.mk_for_a_cleaner_build_sequence|(v11-02a) Removed the <tt>COMPILER</tt> variable from <tt>Makefile_header.mk</tt> for a cleaner build sequence]]
+
#[https://github.com/geoschem/geos-chem-unittest/commit/02aaad73d32cbd54bba450b0a5b2abce6a5cad5e 02aaad73]
*[[GEOS-Chem v11-02#Print the version number to the log file|(v11-02a) Print the version number to the log file]]
+
 
*[[#Removed_the_NNPAR_parameter_from_CMN_SIZE_mod.F|(v11-02a) Removed the <tt>NNPAR</tt> parameter from <tt>CMN_SIZE_mod.F</tt>]]
+
|-
*[[Wet_deposition#Removal_of_obsolete_variables_NSOL_and_IDWETD|(v11-02a) Removed obsolete variables <tt>NSOL</tt> and <tt>IDWETD</tt> in the wetdep module]]
+
!colspan="3" bgcolor="#CCFFFF"|Fixes affecting GCHP only:
*[[Derived type objects used by GEOS-Chem#Summary of fields removed from Input_Opt|(v11-02a) Removed obsolete fields of the <tt>Input_Opt</tt> object]]
+
*[[GEOS-Chem_v11-02#Fixed_an_incorrect_format_statement_in_input_mod.F|(v11-02c) Fixed an incorrect format statement in <tt>input_mod.F</tt>]]
+
*[[Sulfate_aerosols#Add_bug_fix_in_sulfate_mod.F_involving_reorder_IF_statements_for_Fahey_and_Seinfeld_decision_algorithm|(v11-02e) Reordered IF statement in <tt>sulfate_mod.F</tt> for Fahey & Seinfeld decision algorithm]]
+
*[[GEOS-Chem_v11-02#Change_timestep_units_from_minutes_to_seconds|(v11-02e) Change timestep units from minutes to seconds]]
+
*[[UCX_chemistry_mechanism#Remove_UCX_.23ifdefs_and_replace_with_Input_Opt.25LUCX|(v11-02e) Remove #ifdefs for UCX and replace with <tt>Input_Opt%LUCX</tt> logical switch]]
+
*[[GEOS-Chem_v11-02#Fix_bug_in_units_of_UCX_P.2FL_rates|(v11-02f) Fix bug in units of UCX prod/loss rates]]
+
*[[MERRA-2_implementation_details#Default_timestep_for_MERRA-2_nested_grid_simulations|(v11-02f) Change default timesteps for MERRA-2 nested-grid simulations]]
+
  
 
|-valign="top"
 
|-valign="top"
|[[Tagged O3 simulation]]
+
|Emissions (GCHP)
 +
|
 +
#[[GEOS-Chem_12#Fix_masked_anthropogenic_emissions_bug_in_GCHP|Fix masking bug to correctly apply anthropogenic emissions]]
 +
#[[GEOS-Chem_12#Fix_regional_tile_file_used_for_APEI_inventory_in_GCHP|Remove erroneous 180 degree longitude shift in APEI regridding]]
 
|
 
|
*[[Tagged_O3_simulation#Write_initial_and_final_Ox_mass_to_file|(v11-02b) Write initial and final O3 mass to file, to facilitate budget computations]]
 
*[[Tagged_O3_simulation#Fix_bug_in_calculation_of_L.28Ox.29|(v11-02f) Fix bug in calculation of L(Ox) for tagged O3 simulations]]
 
  
 
|-valign="top"
 
|-valign="top"
|[[TOMAS aerosol microphysics]]
+
|Structural (GCHP)
 
|
 
|
*[[TOMAS_aerosol_microphysics#Typo_in_wetscav_mod.F_for_TOMAS30_simulation|(v11-02c) Fixed typo in <tt>wetscav_mod.F</tt> for the TOMAS30 simulation]]
+
*Move GCHP run directory creation from GEOS-Chem Unit Tester to GCHP repository
 +
|
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 15:12, 16 July 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.0.3 ==
 +
 
 +
The bugs and technical issues listed below were resolved in [[GEOS-Chem 12#12.0.3|GEOS-Chem 12.0.3]], which was released on 16 Oct 2018.
 +
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
 +
 
 +
|-valign="top"
 +
!colspan="3" bgcolor="#CCFFFF"|Fixes affecting GCHP only:
 +
 
 +
|-valign="top"
 +
|Emissions (GCHP)
 +
|
 +
#[[#Fix_incorrect_run_configuration_for_offline_sea_salt_emissions_in_GCHP|Fix incorrect run configuration for offline sea salt emissions in GCHP]]
 +
#[[#Fix_bug_in_application_of_CFC_surface_mixing_ratios_in_GCHP|Fix bug in application of CFC surface mixing ratios in GCHP]]
 +
|
 +
 
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 22:01, 21 December 2018 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.0.2 ==
 +
 
 +
The bugs and technical issues listed below were be resolved in [[GEOS-Chem 12#12.0.2|GEOS-Chem 12.0.2]], which was released on 10 Oct 2018.
 +
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
 +
 
 +
|-valign="top"
 +
|Diagnostics
 +
|
 +
#[[GEOS-Chem 12#Fixed_local-time_averaging_in_ND51_and_ND51b_satellite_timeseries_diagnostics|Fixed local-time averaging in ND51 and ND51b satellite timeseries diagnostics]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/14b29d3df84994a9251dd9b2fb0082b75c4affbc 14b29d3d]
 +
 
 +
|-valign="top"
 +
|Specialty simulations
 +
|
 +
#[[TOMAS_aerosol_microphysics#Fixes_for_missing_biomass_emissions_and_incorrect_aerosol_dry_deposition|Correct missing BC/OC biomass emissions and aerosol drydep in TOMAS simulations]]
 +
#[[CO2_simulation#CO2_emissions_are_double_counted|Avoid double-counting of emissions in the CO2 simulation]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/6a944b929764b6e1e7d22f0fd396a3d1515f71dc 6a944b92]
 +
#[https://github.com/geoschem/geos-chem/commit/8320e73d06d94b3e39dd0440f6eb0b1cf3fa0e98 8320e73d]
 +
 
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 19:16, 16 July 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.0.1 ==
 +
 
 +
The bugs and technical issues listed below were resolved in [[GEOS-Chem 12#12.0.1|GEOS-Chem 12.0.1]], which was released on 24 Aug 2018.
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="200px"|Module or area
 +
!width="650px"|Issue that was resolved
 +
!width="130px"|Git commit ID
 +
 
 +
|-valign="top"
 +
|Diagnostics
 +
|
 +
#[[GEOS-Chem 12#Fix typo when registering the State_Chm%SSAlk field|Fix typo when registering the <tt>State_Chm%SSAlk</tt> field]]
 +
#[[Sulfate aerosols#Fix mis-indexing in the ND05 diagnostic|Fix mis-indexing in the ND05 diagnostic]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/55d1687384bcd1e0091cf96ad42fed4fa69cb450 55d16873]
 +
#[https://github.com/geoschem/geos-chem/commit/8e118c0e00403edac7f8d91a7c68c1144a0e64a6 8e118c0e]
 +
 
 +
|-valign="top"
 +
|Mercury
 +
|
 +
#[[Mercury#Restore_biomass_emissions_and_do_not_double_count_anthropogenic_emissions|Fixes for the Hg specialty simualtion: Restore biomass emissions and do not double-count anthropogenic emissions]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/e1e6668b901a49e82e78302bc83e03271af011b0 e1e6668b]
 +
 
 +
|-valign="top"
 +
|Structural updates
 +
|
 +
#Nullify rather than deallocate 3D met arrays for compatibility with gfortran 6+ when using GCHP
 +
#[[GEOS-Chem_Makefile_Structure#Add a more robust test for netCDF-Fortran in Makefile_header.mk|Add a more robust test for netCDF-Fortran in Makefile_header.mk]]
 +
#[[GNU_Fortran_compiler#Compiliation_issues_with_GNU_Fortran_8.2.0|Fix compilation issues encountered with GNU Fortran 8.2.0]]
 +
#[[Intel_Fortran_Compiler#Compilation_issues_with_Intel_Fortran_18|Fix compilation issues encountered with Intel Fortran 18]]
 +
|
 +
#[https://github.com/geoschem/geos-chem/commit/ff7b0c3c73faafa1fdbebaf163178d0a7d224af7 ff7b0c3c]
 +
#[https://github.com/geoschem/geos-chem/commit/a4d550552ecd3a4e2a9dc0b2b63f79500d7eae10 a4d55055]
 +
#[https://github.com/geoschem/geos-chem/commit/e0959563c23b9fe19d9a4e064be846b10cafbc63 e0959563]
 +
#[https://github.com/geoschem/geos-chem/commit/9833fff44cc1b12b41306140dbbd653004c71b54 9833fff4]
 +
 
 +
|}
 +
 
 +
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 19:20, 16 July 2019 (UTC)
 +
 
 +
== Issues resolved in GEOS-Chem 12.0.0 ==
 +
 
 +
The bugs and technical issues listed below were resolved in [[GEOS-Chem 12#12.0.0|GEOS-Chem 12.0.0]], which was released on 10 Aug 2018.
 +
 
 +
{| border=1 cellspacing=0 cellpadding=5
 +
|-bgcolor="#CCCCCC"
 +
!width="250px"|Module or area
 +
!width="750px"|Issue that was resolved
 +
 
 +
|-valign="top"
 +
|Aerosols
 +
|
 +
*[[GEOS-Chem_12#Fix_issues_in_complexSOA_and_complexSOA_SVPOA_restart_files|Fix issues in complexSOA and complexSOA_SVPOA restart files]]
 +
 
 +
|-valign="top"
 +
|Chemistry
 +
|
 +
*[[Stratospheric_chemistry#Disable_STE_calculation_printed_to_log_file|Disable STE calculation printed to log file]]
 +
*[[Linoz_stratospheric_ozone_chemistry#Turn_on_Synoz_when_Linoz_is_set_to_false_in_input.geos|Turn on Synoz when Linoz is set to false in input.geos]]
 +
*[[GEOS-Chem_12#Remove_duplicate_C3HI_spectrum_in_FJX_spec.dat_and_FJX_j2j.dat|Remove duplicate C3HI spectrum in FJX_spec.dat and FJX_j2j.dat]]
 +
*[[GEOS-Chem 12#Add PH2O2 to the default list of prod/loss families in the KPP mechanisms|Add P(H2O2) to the default list of prod/loss families in the KPP mechanisms]]
 +
*[[GEOS-Chem_12#Bug_fix_for_liquid_water_content_in_gckpp_HetRates.F90|Bug fix for liquid water content in gckpp_Hetrates.F90]]
 +
*[[GEOS-Chem_12#Fixed_typo_in_call_to_GAMMA_HOBr_AER|Fixed typo in call to GAMMA_HOBr_AER (in KPP module gckpp_HetRates.F90)]]
 +
*[[Organics_Working_Group#Add_missing_Criegee_intermediate_reaction|Add missing Criegee intermediate reaction]]
 +
*[[GEOS-Chem_12#Bug_fix_for_CH4_boundary_conditions|Bug fix for CH4 boundary conditions]]
 +
*[[FlexChem#FlexChem bug fix: do not zero ACTA, EOH, HCOOH|Bug fix in FlexChem: do not zero out ACTA, EOH, HCOOH concentrations]]
 +
 
 +
|-valign="top"
 +
|Diagnostics
 +
|
 +
*[[GEOS-Chem 12#Fixed typo that prevented PM2.5 from being archived to netCDF output|Fixed typo that prevented PM2.5 from being archived to netCDF output]]
 +
*[[Planeflight_diagnostic#Stop_with_error_if_the_plane_type_is_not_specified_in_Planeflight.dat|Planeflight diagnostic fix: Stop with error if the plane type is not specified in Planeflight.dat]]
 +
*[[#Bug fix for reference time in netCDF diagnostic files|Bug fix for reference time in netCDF diagnostic files]]
 +
 
 +
|-valign="top"
 +
|Emissions
 +
|
 +
*[[Lightning_NOx_emissions#Limit_flash_rate_density_in_hcox_lightnox_mod.F90|Limit flash rate density in hcox_lightnox_mod.F90]]
 +
*[[GEOS-Chem_12#Add_entries_to_HEMCO_Config.rc_for_SOAP_and_pFe_in_CEDS_inventory|Add entries to HEMCO_Config.rc for SOAP and pFe in CEDS inventory]]
 +
*[[Trash_burning_emissions#Avoid_double_counting_trash_emissions|Turn off TRASH emissions by default to avoid double counting]]
 +
*Update to HEMCO v2.1.007, which includes minor updates:
 +
*#[[Implementation of HEMCO in GEOS-Chem#Fixed_error_in_HEMCO_.22exact.22_time_option|Fixed error in HEMCO "exact" cycling option]]
 +
*#[[Implementation of HEMCO in GEOS-Chem#Stop with error if multiple containers have the same name|Stop with error if multiple containers have the same name]]
 +
*#[[Implementation of HEMCO in GEOS-Chem#Bug fix for distributing emissions in the vertical dimension|Bug fix for distributing emissions in the vertical dimension]]
 +
*#[[Implementation of HEMCO in GEOS-Chem#Add extra error checks in HEMCO standalone module|Add extra error checks in HEMCO standalone module]]
 +
*#[[Implementation of HEMCO in GEOS-Chem#Remove null string character from netCDF unit string|Remove null string character from netCDF unit string for GEOS-Chem "Classic" simulations]]
 +
*#[[Implementation_of_HEMCO_in_GEOS-Chem#Bug fix for HEMCO soil NOx error with ifort 17|Bug fix for HEMCO soil NOx error with ifort 17]]
 +
*Correct issues when specifying [[DICE-Africa anthropogenic emissions inventory|DICE-Africa emissions]]:
 +
*#[[DICE-Africa_anthropogenic_emissions_inventory#Avoid_double-counting_between_DICE-Africa_and_other_inventories|Avoid double-counting between DICE-Africa and other inventories]]
 +
*#[[DICE-Africa_anthropogenic_emissions_inventory#Use_unique_names_for_DICE-Africa_entries_in_HEMCO_Config.rc|Use unique names for DICE-Africa entries in the <tt>HEMCO_Config.rc</tt> file]]
 +
*Updates for [[QFED biomass burning emissions]]:
 +
*#[[QFED biomass burning emissions#Update to QFED v2.5r1|Update to QFED v2.5r1]]
 +
*#[[QFED_biomass_burning_emissions#Fix_QFED_files_for_2016.2F10.2F13|Fix QFED v2.4r6 files for 2016/10/13]]
 +
*[[GEOS-Chem 12#Avoid double counting CEDS and GEIA NH3 biofuel emissions|Avoid double counting CEDS and GEIA NH3 biofuel emissions]]
 +
*[[Ship_emissions#Fix_bug_in_ARCTAS_SHIP_SO2_scale_factors|Bug fix for ARCTAS_SHIP in <tt>HEMCO_Config.rc</tt> files]]
 +
 
 +
|-valign="top"
 +
|Specialty simulations
 +
|
 +
*[[Coupling_GEOS-Chem_with_RRTMG#Bug_fixes_for_RRTMG_in_v11-02|Bug fixes for v11-02 simulations using the RRTMG radiative transfer model]]
 +
 
 +
|-valign="top"
 +
|Structural updates
 +
|
 +
*Initial structural updates to interface GEOS-Chem into WRF
 +
*Now always declare the netCDF time variable with an unlimited dimension
  
 
|}
 
|}
Line 431: Line 850:
 
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 19:57, 23 January 2017 (UTC)
 
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 19:57, 23 January 2017 (UTC)
  
== Issues resolved in GEOS-Chem v10-01 ==
+
== Bugs and fixes in older GEOS-Chem versions ==
 
+
The following bugs and/or technical issues were resolved in [[GEOS-Chem v10-01]].  Also be sure to visit [[Known issues caused by compiler bugs|our ''Known issues caused by compiler bugs'' wiki page]] for a list of compiler-related issues and workarounds.
+
 
+
{| border=1 cellspacing=0 cellpadding=5
+
|-bgcolor="#CCCCCC"
+
!width="250px"|Module or area
+
!width="750px"|Issue that was resolved
+
 
+
|-valign="top"
+
|Stratospheric chemistry module
+
|
+
*[[Stratospheric_chemistry#Reduce_memory_footprint_of_the_stratospheric_chemistry_module|Reduce memory footprint of the stratospheric chemistry module]]
+
*[[Stratospheric_chemistry#Bug_fix_in_routine_GET_RATES_INTERP|Bug fix in GET_RATES_INTERP]]
+
*[[Bromine_chemistry_mechanism#Bugs_in_data_files_used_to_prescribe_stratospheric_Bry|Now read corrected stratospheric Bry data via HEMCO]]
+
 
+
|-valign="top"
+
|Photolysis
+
|
+
*[[FAST-J photolysis mechanism#Now_use_MAP_A2A_to_regrid_1x1_TOMS_O3_to_model_resolution|Now use MAP_A2A to regrid 1x1 TOMS O3 to model resolution]]
+
*[[FAST-J photolysis_mechanism#Bug_fix_for_determining_when_to_use_TOMS_O3_columns|Bug fix for determining when to use TOMS O3 columns]]
+
*[[Development_of_Fast-JX_in_GEOS-Chem#Reactivation_of_bromine_species_photolysis_for_tropospheric_simulation|Reactivation of Br species photolysis in Fast-JX for tropospheric chemistry simulation]]
+
*[[Development_of_Fast-JX_in_GEOS-Chem#Error_in_reducing_wavelength_bins_for_tropospheric_simulation|Fixed wavelength bin interpolation error in Fast-JX for tropospheric-only simulation]]
+
*[[FAST-JX_v7.0_photolysis_mechanism#Now_use_proper_org.dat_file_with_data_for_multiple_wavelengths|Now use proper photolysis input file <tt>org.dat</tt>]]
+
 
+
|-valign="top"
+
|NOx-Ox chemistry and nested grid simulations
+
|
+
*[[UCX_chemistry_mechanism#Modify_treatment_of_N2O5_.2B_H2O_reaction_in_calcrate.F|Modify treatment of N2O5+H2O reaction in calcrate.F]]
+
*[[Setting_up_GEOS-Chem_nested_grid_simulations#Parallelization_error_in_nested_grid_simulations|Fixed parallelization error in nested grid simulations]]
+
*[[Ship_emissions#Fix_for_high_values_of_O3_dry_deposition|Fix for high values of O3 dry deposition]]
+
*[[New_isoprene_scheme#Remove_duplicate_GLYX_product_from_RIO2_reaction|Remove duplicate GLYX product from RIO2 reaction]]
+
*[[Sea_salt_aerosols#Bug_in_ND44_drydep_diagnostic_for_sea_salt_aerosols|Bug fix in ND44 drydep diagnostic for sea salt aerosols]]
+
*[[FAST-JX_v7.0_photolysis_mechanism#Final_recommendation_for_J.28HAC.29_and_J.28PAN.29|Implement final recommendation for J(HAC) and J(PAN)]]
+
*[[FAST-JX_v7.0_photolysis_mechanism#Acetaldehyde_photolysis|Now use updated cross-sections for computing J(ALD2)]]
+
*[[Nested_Model_Working_Group#Bug_fixes_for_the_0.25x0.3125_nested_CH_simulation|Resolved technical issues for 0.25&deg; x 0.3125&deg; CH nested simulation]]
+
*[[GEOS-Chem_v10-01#Bug_fixes_and_and_updates_for_v10-01g|Bug fix for planeflight diagnostic when using chemistry timesteps < 15 min]]
+
*[[GEOS-Chem_v10-01#Bug_fixes_and_updates_for_v10-01i|Now call the planeflight diagnostic after chemistry, not after emissions]]
+
*[[Wet_deposition#Bug_fixes_for_scavenging_by_co-condensation|Bug fixes for wet scavenging by co-condensation]]
+
*[[Wet_deposition#Bugs_in_MERRA_wet_deposition|Fixes for bugs in wet deposition when using MERRA meteorology]]
+
*[[Dry_deposition#Remove_obsolete_ISN2_drydep_species|Remove obsolete ISN2 drydep species]]
+
*[[GEOS-Chem_v10-01#Fixed_typo_for_BROMOCARB_SEASON_in_HEMCO_configuration_files|Fixed typo for BROMOCARB_SEASON in HEMCO configuration files]]
+
*[[GEOS-Chem_v10-01#Fixes_for_the_0.25_x_0.3125_nested_EU_simulation_using_GEOS-FP_meteorology|Bug fixes for GEOS-FP nested EU simulation]]
+
*[[GEOS-Chem_v10-01#Additional_fixes_for_MERRA_wet_deposition|Fixes for wet deposition when using MERRA met fields]]
+
*[[GEOS-Chem_v10-01#Fix_AEFs_for_sesquiterpenes_in_the_SOA_simulation|Fix MEGAN AEF's for sesquiterpenes in the SOA simulation]]
+
 
+
|-valign="top"
+
|Specialty simulations
+
|
+
*[[TOMAS_aerosol_microphysics#Reactivating_dust_tracers_in_TOMAS_simulations|Reactivating dust tracers in TOMAS simulations]]
+
*[[TOMAS_aerosol_microphysics#Prevent_sea_salt_from_being_emitted_over_ice_in_TOMAS|Prevent sea salt from being emitted over ice in TOMAS]]
+
*[[TOMAS_aerosol_microphysics#Fix_for_ND61_diagnostic|Fix for ND61 diagnostic in TOMAS simulations]]
+
*[[Global_Terrestrial_Mercury_Model#Fixed_library_linking_issue_when_building_GTMM_into_GEOS-Chem|Fixed library linking issue when building GTMM into GEOS-Chem]]
+
*[[CH4_simulation#Minor_fixes_to_CH4_simulation_for_MERRA_meteorology|Minor fixes to CH4 simulation for MERRA meteorology]]
+
*[[POPs_simulation#Avoid_div-by-zero_errors_in_POPs_simulation|Avoid div-by-zero errors in POPs simulation]]
+
*[[Tagged_CO_simulation#Bug_fixes_and_updates_for_tagged_CO_in_v9-02|Bug fixes and updates for tagged CO simulation in v9-02]]
+
*[[Mercury#Bug_in_tagged_Hg_emissions_in_v9-02|Fixed bug in tagged Hg emissions]]
+
 
+
|-valign="top"
+
|HEMCO emissions component
+
|
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Fix_for_segmentation_fault_when_emissions_are_turned_off|Prevent segmentation fault errors in HEMCO when emissions are turned off]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_in_v10-01f|Add new functionality into HEMCO]]
+
*[[Ship_emissions#Bug_fixes_for_the_PARANOX_HEMCO_extension|Bug fixes for the PARANOX extension in HEMCO]]
+
*[[Regridding_in_GEOS-Chem#Error_in_regridding_regional_data_files|Bug fix for regridding of regional data files by HEMCO]]
+
*[[MEGAN v2.1 plus Guenther 2012 biogenic_emissions#Minor_bug_fix_in_MEGAN_Mono_extension|Prevent array out-of-bounds error if <tt>MEGAN_mono</tt> extension is turned off]]
+
*[[MEGAN_v2.1_plus_Guenther_2012_biogenic_emissions#Restore_missing_BIOGENIC_CO_diagnostics|Restore missing diagnostic: "Biogenic CO from monoterpenes"]]
+
*[[Implementation_of_HEMCO_in_GEOS-Chem#Features_added_during_the_public_comment_period_prior_to_v10-01_release|Additional HEMCO updates made during the v10-01 period of public comment]]
+
*[[GEOS-Chem_v10-01#Updated_name_of_ICOADS_SHIP_files_in_HEMCO_configuration_files|Fixed filename for ICOADS_SHIP in HEMCO configuration files]]
+
*[[GEOS-Chem v10-01#Avoid PARANOX SUNCOS error by using the proper timestamps|Fix for error in PARANOX caused by improper timestamps of SUNCOS]]
+
*[[GEOS-Chem_v10-01#Minor_fixes_for_FINNv1_biomass_burning|Minor fixes for FINNv1 biomass burning emissions]]
+
*[[GEOS-Chem_v10-01#Removing_additional_code_made_obsolete_by_HEMCO|Removing leftover code that was orphaned by HEMCO]]
+
  
|-valign="top"
+
For a complete list of bugs and fixes in older GEOS-Chem versions, please see:
|Removing computational bottlenecks
+
|
+
*[[Cloud convection#Removed array temporaries in call to FVDAS_CONVECT|Removed array temporaries in the call to the GEOS-4 convection routine]]
+
*[[GCAP#Removed_array_temporaries_in_call_to_GCAP_CONVECT|Removed array temporaries in the call to the GCAP convection routine]]
+
*[[Mercury#Remove_array_temporaries_in_routine_READ_HG2_PARTITIONING|Removed array temporaries in subroutine <tt>READ_HG2_PARTITIONING</tt>]]
+
*[[Advection_scheme_TPCORE#Reduce_time_spent_in_routine_TPCORE_FVDAS|Reduce time spent in advection driver routine TPCORE_FVDAS]]
+
 
+
|-valign="top"
+
|Miscellaneous
+
|
+
*[[GEOS-Chem_v9-02#Incorrect_value_of_molecular_weight_for_the_PROPNN_tracer_in_input.geos|Now use correct value of molecular weight for PROPNN tracer]]
+
*[[Installing_libraries_for_GEOS-Chem#How_GEOS-Chem_uses_nc-config_and_nf-config|Make the netCDF library linking process more portable]]
+
*[[Regridding_in_GEOS-Chem#Fix_for_optimization_error_discovered_in_v10-01h|Fix for optimization error discovered in v10-01h]]
+
*[[GEOS-Chem_v10-01#Bug_fix_in_I3_field_interpolation|Bug fix for I3 field interpolation]]
+
*[[GEOS-Chem_v10-01#Minor_bug_fix_in_gamap_mod.F|Bug fix in gamap_mod.F]]
+
*[[GEOS-Chem_v10-01#Bug_fixes_for_the_PGI_compiler|Bug fixes for the PGI compiler]]
+
*[[GEOS-Chem_v10-01#Other miscellaneous updates|Now use "percent" instead of "%" in data files]]
+
 
+
|}
+
 
+
--[[User:Bmy|Bob Y.]] ([[User talk:Bmy|talk]]) 20:56, 26 October 2015 (UTC)
+
 
+
== Issues resolved in GEOS-Chem v9-02 ==
+
 
+
The following bugs and/or technical issues were resolved in GEOS-Chem v9-02.  Also be sure to visit [[Known issues caused by compiler bugs|our ''Known issues caused by compiler bugs'' wiki page]] for a list of compiler-related issues and workarounds.
+
 
+
{| border=1 cellspacing=0 cellpadding=5
+
|-bgcolor="#CCCCCC"
+
!width="250px"|Module or area
+
!width="750px"|Issue that was resolved
+
 
+
|-valign="top"
+
|Emissions
+
|
+
*[[GEOS-Chem_v9-02#Bug_fix_for_updated_CAC_emissions|Bug fix for updated CAC emissions]]
+
*[[GEOS-Chem_v9-02#Bug_fix_for_Br2_emissions|Bug fix for Br2 emissions]]
+
*[[GEOS-Chem_v9-02#Bug_in_regridding_of_anthropogenic_emissions|Bug fix in regridding of anthro emissions]]
+
*[[GEOS-Chem_v9-02#Bug_in_MEGAN_emissions_when_running_with_MERRA_or_GEOS-FP|Bug in MEGAN emissions when using MERRA or GEOS-FP]]
+
*[[GEOS-Chem_v9-02#Bug_fix_in_nei2005_anthro_mod.F|Bug fix in nei2005_anthro_mod.F]]
+
*[[David_Streets_regional_emissions_for_China_and_SE_Asia#Bug_in_EMIS_STREETS_ANTHRO_05x0666|Bug fix in EMIS_STREETS_ANTHRO_05x0666]]
+
*[[GEOS-Chem_v9-02#Bug_fixes_in_biofuel_mod.F_and_emfossil.F|Bug fixes in biofuel_mod.F and emfossil.F]]
+
*[[GFED3_biomass_burning_emissions#Bug_fix_for_3-hourly_GFED3_emissions|Bug fix for 3-hourly GFED3 emissions]]
+
*[[Volcanic_SO2_emissions_from_Aerocom#Typo_in_VOLCPRESS_definition|Fixed typo in Aerocom volcanic SO2 emissions routine]]
+
*[[GEOS-Chem_v9-02#Bug_fixes_in_day-of-week_computation|Bug fixes in day-of-week computation]]
+
*[[Anthropogenic_emissions#Prevent_negative_emissions_over_Canada|Prevent negative emissions over Canada]]
+
*[[TOMAS_aerosol_microphysics#Minor_bug_in_TOMAS_sulfate_emissions|Minor bug fix in TOMAS sulfate emissions]]
+
*[[EPA/NEI05 North American emissions#Bug fix for NEI2005 SO4 emissions in sulfate_mod.F|Bug fix for NEI2005 SO4 emissions in sulfate_mod.F]]
+
*[[Hudman_et_al_2012_soil_NOx_emissions_algorithm#Prevent_LOG.280.29_error_from_occurring_in_soil_NOx_module|Prevent LOG(0) error from occurring in soil NOx module]]
+
*[[Historical_and_Future_Emissions#Bug_fix_for_BC.2FOC_biofuels_when_using_RCP_scenarios|Bug fix for biofuels when using RCP scenarios]]
+
 
+
|-valign="top"
+
|Dry deposition and wet deposition
+
|
+
*[[Acetone#DRYACET_is_missing_from_globchem.dat|Add missing DRYACET to globchem.dat mechanism file]]
+
*[[Wet_deposition#Bug_in_Henry.27s_constant|Bug fix in Henry's law constant]]
+
*[[Dry_deposition#Error_in_definition_of_RIP_and_IEPOX_drydep_species|Bug fix in definition of RIP, IEPOX drydep species]]
+
*[[Ship_emissions#Only_call_PARANOX_with_the_full-chemistry_simulations|Bug fix: Do not call PARANOX plume model for offline simulations]]
+
*[[Dry_deposition#Parallelization_error_in_routine_METERO|Fix for parallelization bug in subroutine METERO (in drydep module)]]
+
*[[Dry_deposition#Parallelization_error_in_routine_DRYFLX|Fixed parallelization error in routine DRYFLX (in dry deposition module)]]
+
*[[GEOS-Chem_v9-02#Prevent_bad_drydep_flux_values_from_being_passed_to_the_soil_NOx_emissions_module|Prevent bad drydep flux values from being passed to the soil NOx module]]
+
*[[Sea_salt_aerosols#Minor_bug_in_AD44_diagnostic_in_routine_DRY_DEPOSITION|Fixed minor bug in AD44 diagnostic in routine DRY DEPOSITION (sea salt aerosols)]]
+
 
+
|-valign="top"
+
|Met fields
+
|
+
*[[GEOS-Chem_v9-02#Correction_for_GEOS-5_PBL_heights|Correction for GEOS-5 PBL heights]]
+
*[[GEOS-5 issues#Reset NaNs in MOISTQ to zero|Reset NaNs in MOISTQ to zero]]
+
*[[GEOS-Chem_v9-02#Convert_MERRA_and_GEOS-FP_relative_humidity_fields_to_percent_after_reading_from_disk|Convert MERRA and GEOS-FP relative humidity fields to percent after reading from disk]]
+
*[[GEOS-Chem_v9-02#Bug_fix_for_declaration_of_GEOS-FP_PFICU.2C_PFLCU.2C_PFILSAN.2C_PFLLSAN_fields|Bug fix for declaration of certain GEOS-FP met fields]]
+
 
+
|-valign="top"
+
|Computational efficiency
+
|
+
*[[Passing_array_arguments_efficiently_in_GEOS-Chem|Eliminate inefficient subroutine calls]]
+
*[[Numerical issues discovered in GEOS-Chem|Corrected several floating-point errors]]
+
*Eliminate array temporaries in [[Passing_array_arguments_efficiently_in_GEOS-Chem#pjc_pfix_mod.F|pjc_pfix_mod.F]] and [[Passing_array_arguments_efficiently_in_GEOS-Chem#pressure_mod.F|pressure_mod.F]]
+
*[[Passing_array_arguments_efficiently_in_GEOS-Chem#gcap_convect_mod.F|Eliminate array temporaries in GCAP convection module]]
+
 
+
|-valign="top"
+
|Diagnostics
+
|
+
*[[GEOS-Chem_v9-01-03#Bug_fix_in_hdf_mod.F|Bug fix in hdf_mod.F]]
+
*[[GEOS-Chem_v9-02#Bug_fixes_in_diag48_mod.F|Bug fixes in diag48_mod.F]]
+
*[[Ship_emissions#Bug_in_ND36_diagnostic_when_ship_emissions_are_turned_off|Bug fix in ND36 diagnostic when ship emissions are turned off]]
+
 
+
|-valign="top"
+
|Specialty simulations (including microphysics)
+
|
+
*[[GEOS-Chem_v9-02#Bug_fixes_for_tagged_CO_simulation|Bug fixes for tagged CO simulation]]
+
*[[Mercury#Bug_fixes_for_nested_Hg_simulation|Bug fixes for nested Hg simulation]]
+
*[[GEOS-Chem_v9-02#Bug_fix_for_reading_OH_file_in_offline_simulations|Bug fix for reading OH file in offline simulations]]
+
*[[Aerosol-only_simulation#Emissions_not_included_when_using_non-local_PBL_mixing_scheme|Now include emissions in the aerosol-only simulation when using non-local PBL mixing]]
+
*[[Aerosol-only_simulation#Error_in_ISOROPIAII_when_sulfate_aerosols_are_turned_off|Avoid error in ISOROPIAII when using offline aerosol simulation]]
+
*[[Tagged_O3_simulation#Modifications_for_v9-02_tagged_O3_simulation|Modifications for v9-02 tagged O3 simulation]]
+
*[[CH4_simulation#Fixes_for_wetland_emissions|Fixes for wetland emissions in CH4 simulation]]
+
*[[Tagged_O3_simulation#Reactivate_stratospheric_P.28Ox.29_in_tagged_Ox_simulation|Reactivate stratospheric P(Ox) in tagged Ox simulation]]
+
*[[Tagged_O3_simulation#Replace_LD65_with_LLTROP_in_tagged_ox_mod.F|Replace LD65 with LLTROP in tagged_ox_mod.F]]
+
*[[TOMAS_aerosol_microphysics#Updates_for_GEOS-Chem_v9-02_public_release|Several fixes for TOMAS aerosol microphysics]]
+
*[[POPs_simulation#Prevent_error_when_reading_global_OC|Prevent error in POPs simulation when reading global OC]]
+
 
+
|-valign="top"
+
|Photolysis
+
|
+
*[[FAST-J photolysis mechanism#Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data|Prevent 0.5 x 0.667 nested grid simulations from crashing when reading TOMS data]]
+
*[[Aerosol_optical_properties#Fix_to_jv_spec_aod.dat|Add fix to jv_spec_aod.dat file]]
+
*[[FAST-J photolysis mechanism#v9-02 post-release patch to fix bug in acetone photolysis pressure dependency|Post-release patch to fix bug in acetone photolysis pressure dependency]]
+
 
+
|-valign="top"
+
|Miscellaneous
+
|
+
*[[GEOS-Chem_v9-02#Additional_bug_fixes_for_MAP_A2A_regridding_algorithm|Additional bug fixes for MAP_A2A regridding]]
+
*[[Regridding_in_GEOS-Chem#Bug_in_grid_mod.F90|Bug fix in grid_mod.F90]]
+
*[[GCAP#Fixed_bugs_caused_by_GIGC_edits|Fixed typos in GCAP code]]
+
*[[Linoz stratospheric ozone chemistry#Reactivate parallel DO loop in LINOZ_CHEMO3|Reactivate parallel DO loop in LINOZ_CHEMO3 routine]]
+
*[[Boundary_layer_mixing#Corrected_unit_conversion_bug_in_calls_to_SET_CH3Br.2C_SET_BrO_for_TURBDAY_PBL_mixing|Corrected unit conversion bug when TURBDAY PBL mixing is used]]
+
*[[GEOS-Chem_v9-02#Fixes_for_minor_technical_issues|Fixes for minor technical issues]]
+
 
+
|}
+
 
+
--[[User:Bmy|Bob Y.]] ([[User talk:Bmy|talk]]) 21:00, 26 October 2015 (UTC)
+
 
+
== Bugs and fixes in older GEOS-Chem versions ==
+
  
For a complete list of bugs and fixes in older GEOS-Chem versions, please see [[Bugs and fixes prior to v9-02|our ''Bugs and fixes prior to v9-02'' wiki page]].
+
*[[Bugs and fixes in GEOS-Chem v9, v10, and v11]]
 +
*[[Bugs and fixes in GEOS-Chem v7 and v8]]
  
--[[User:Bmy|Bob Y.]] 17:40, 16 April 2015 (EDT)
+
--[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 20:47, 2 January 2019 (UTC)
--[[User:Bmy|Bob Y.]] 14:11, 20 May 2014 (EDT)
+

Revision as of 15:25, 3 April 2020

On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.

Please also be sure to visit our Common GEOS-Chem error messages wiki page for more general information about some frequently encountered errors. Also visit our Currently unresolved issues in GEOS-Chem and Known issues caused by compiler bugs wiki pages for more information about unresolved issues.

Bugs and fixes lists have now been migrated to Github

We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there.

Version Released List of bugs and issues (now posted on the listed Github repository)
13.0.0 TBD geoschem/geos-chem
12.9.0 TBD geoschem/geos-chem
12.8.1 TBD geoschem/geos-chem
12.8.0 pending geoschem/geos-chem Milestone 12.8.0
12.7.2 09 Mar 2020 geoschem/geos-chem Milestone 12.7.2
12.7.1 19 Feb 2020 geoschem/geos-chem Milestone 12.7.1
12.7.0 03 Feb 2020 geoschem/geos-chem Milestone 12.7.0
12.6.3 25 Nov 2019 geoschem/gchp Milestone 12.6.3
12.6.2 15 Nov 2019 geoschem/geos-chem Milestone 12.6.2
12.6.1 28 Oct 2019 geoschem/geos-chem Milestone 12.6.1
12.6.0 18 Oct 2019 geoschem/geos-chem Milestone 12.6.0

Issues resolved in GEOS-Chem 12.5.0

The bugs and technical issues listed below will be resolved GEOS-Chem 12.5.0, release date TBD.

Module or area Issue that was resolved Git commit ID
Chemistry
  1. Bug fix: Make sure stratospheric BrY concentrations are properly read each month
  2. Add photolysis menu to input.geos for specifying FAST-JX directory
  3. Correction for CFCs in the chemistry mechanism
  4. Fix typo in CLD_PARAMS routine in gckpp_HetRates.F90
  1. 0588a269
  2. 03e94fed
  3. 1b9f69f0
  4. 95d124e0
Diagnostics
  1. Enable GEOS-Chem "Classic" netCDF (History) diagnostics to be subsetted vertically and horizontally
  2. Enable accurate cloud pH diagnostic calculation via post-processing
  1. 6acd4ce3
  2. 1c15e54a
Structural updates
  1. Add optional capability to compile GEOS-Chem Classic and GCHP using CMake
  1. pull/27
Emissions
  1. Fixes for GFED4 biomass burning emissions, including:
    • Change the HEMCO cycling flag so that the model crashes if it doesn't find the right GFED year
    • Remove the 27% scaling of POG to POA and emit 1:1 instead
  1. 381386fb
Fixes affecting GCHP only:
Structural updates
  1. Update GCHP to use MAPL v1.0.0 and ESMF v8.0.0 beta snapshot 28
    • Will introuduce faster parallel I/O
    • Will enable full use of gfortran compiler

--Bob Yantosca (talk) 17:03, 15 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.4.0

The bugs and technical issues listed below will be resolved GEOS-Chem 12.4.0, release date TBD.

Module or area Issue that was resolved Git commit ID
Photolysis
  1. Bug fix: Rebuild chemical mechanisms for FAST-JX fix added in 12.3.2
  2. Add photolysis menu to input.geos for specifying FAST-JX directory
  1. fcd0cfba
  2. d34a9cd2

--Bob Yantosca (talk) 17:04, 15 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.3.2

The bugs and technical issues listed below will be resolved GEOS-Chem 12.3.2.

Module or area Issue that was resolved Git commit ID
Chemistry
  1. Fix inconsistency for species H2402 between GCHP and GEOS-Chem "Classic"
  1. rel/12.3.2
Photolysis
  1. Remove duplicate entry for species ClNO2 in the FJX_j2j.dat file
  2. Species DHDC was not listed as photolyzing in the GEOS-Chem species database
  1. rel/12.3.2
  2. d7c48d14
Fixes affecting GCHP only:
Emissions
  1. Disable Br2 offline seasalt emissions to match GEOS-Chem Classic default
  2. Fix HEMCO diagnostics settings for lightning NO and seasalt emissions
  1. f6ac477a
  2. cda5044e

--Bob Yantosca (talk) 16:37, 15 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.3.1

The bugs and technical issues listed below were resolved GEOS-Chem 12.3.1 (release 08 Apr 2019).

Module or area Issue that was resolved Git commit ID
Diagnostics
  1. Planeflight diagnostic now writes out data for the last timestep of the day
  2. Fix the netCDF diagnostic for noontime J-values
  1. 04da94cd
  2. f4d43b7a
Structural
  1. Do not allocate memory to array MINIT in strat_chem_mod.F90
  2. Declare State_Met%Area_M2 as 2-dimensional, not 3-dimensional
  1. 729fd2a7
  2. e4af25f3b

--Bob Yantosca (talk) 20:06, 16 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.3.0

The bugs and technical issues listed below were resolved GEOS-Chem 12.3.0 (release date TBD).

Module or area Issue that was resolved Git commit ID
Diagnostics / Restart files
  1. Further bug fix for netCDF diagnostics spanning leap years
  1. fb093d61
Emissions
  1. Bug fixes for the HEMCO interpolation algorithm
  2. Updates from the NASA GEOS development branch
  3. Add option to always use simulation year for specified fields
  4. Prevent zero emissions for MEGAN_Mono extension species
  5. Updates to the volcanic emissions extension
  1. e947fc80
  2. 7df3fc8e
  3. 23189032
  4. af86c4dd
  5. 07c10319

--Bob Yantosca (talk) 15:53, 21 March 2019 (UTC)

Issues resolved in GEOS-Chem 12.2.1

The bugs and technical issues listed below were resolved GEOS-Chem 12.2.1 (release date 28 Feb 2019).

Module or area Issue that was resolved Git commit ID
Diagnostics / Restart files
  1. Bug fix: netCDF diagnostic collections with frequency "End" now properly span leap year days
  1. ca68f508
CO2 simulation
  1. Fix for CO2 simulation chemical source
  1. N/A
TOMAS simulations
  1. Restore DST1, DST2, DST3, and DST4 in TOMAS simulations
  1. 5ed3e9cf
Fixes affecting GCHP only:
Emissions etc.
  1. Use online sea flux emissions by default in GCHP
  2. Update MODIS LAI source directory to match GEOS-Chem Classic
  1. 9759d26b
  2. N/A
Met fields
  1. Missing scaling factors for MERRA-2 simulations with GCHP
  1. ?

--Bob Yantosca (talk) 17:03, 15 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.2.0

The bugs and technical issues listed below were resolved GEOS-Chem 12.2.0 (release date 19 Feb 2019).

Module or area Issue that was resolved Git commit ID
Diagnostics
  1. Fix bug in stratospheric aerosol surface area in netCDF diagnostics
  1. e4fecf01
Fixes affecting GCHP only:
Restart files
  1. GCHP bug fix: Use checkpoint output as the subsequent restart file

--Bob Yantosca (talk) 20:02, 14 March 2019 (UTC)

Issues resolved in GEOS-Chem 12.1.1

The bugs and technical issues listed below were resolved in GEOS-Chem 12.1.1, which was released on 13 Dec 2018.

Module or area Issue that was resolved Git commit ID
Compilation issues
  1. Always enable BPCH_TPBC to allow saving out BC files in global simulations
  2. Add hco_interface_mod.o to list of dependencies for get_met_mod.o and only compile get_met_mod.F90 and flexgrid_mod.F90 for GEOS-Chem "Classic"
  3. Add flexgrid_read_mod.o to list of dependencies for hcoi_gc_main_mod.o
  1. 072ec9d6
  2. 096ad29d
  3. f9b2f195
Diagnostics
  1. Skip planeflight observations outside a nested domain
  1. f6f90fd4
Tagged CO simulation
  1. Bug fix for tagged CO: don't multiply emissions timestep by 60
  1. 8a1b078e
Fixes affecting GCHP only:
Transport (FvDycore)
  1. GCHP transport fix to prevent instant propagation from troposphere to stratosphere

--Bob Yantosca (talk) 14:12, 16 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.1.0

The bugs and technical issues listed below were resolved in GEOS-Chem 12.1.0, which was released on 26 Nov 2018.

Module or area Issue that was resolved Git commit ID
CH4 simulation
  1. Add fixes for seasonal scale factors in CH4 simulations
  1. 6f48d045
Chemistry and Photolysis
  1. Allow for SZA to 98 degrees when getting photolysis rates
  2. Move Fast-JX .dat files from the geos-chem-unittest repository to gcgrid/ExtData
  1. d06ae04a
  2. 03e94fed
Emissions
  1. Add missing RCO sector to CEDS emissions entries
  2. Include CEDS ship emissions as default global ship emissions inventory
  3. Reduce file size for CEDS inventory
  4. HEMCO bug fix: prevent excessive attempts to read the HEMCO restart file when using GEOS-Chem "Classic"
  5. Add fix for collapsing model levels to reduced grid
  6. Fix unit conversion in HCO_UNIT_GetAreaScal
  1. 642dd0af
  2. e71d0d67
  3. 20451cb4
  4. 3f62e749
  5. 820b8d7d
  6. 7dfd99da
PBL Mixing
  1. Fix mass conservation in non-local PBL mixing
  1. 57c75178
Tagged CO simulation
  1. Update HEMCO configuration file for the tagged CO simulation
  1. 02aaad73
Fixes affecting GCHP only:
Emissions (GCHP)
  1. Fix masking bug to correctly apply anthropogenic emissions
  2. Remove erroneous 180 degree longitude shift in APEI regridding
Structural (GCHP)
  • Move GCHP run directory creation from GEOS-Chem Unit Tester to GCHP repository

--Bob Yantosca (talk) 15:12, 16 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.0.3

The bugs and technical issues listed below were resolved in GEOS-Chem 12.0.3, which was released on 16 Oct 2018.

Module or area Issue that was resolved Git commit ID
Fixes affecting GCHP only:
Emissions (GCHP)
  1. Fix incorrect run configuration for offline sea salt emissions in GCHP
  2. Fix bug in application of CFC surface mixing ratios in GCHP

--Bob Yantosca (talk) 22:01, 21 December 2018 (UTC)

Issues resolved in GEOS-Chem 12.0.2

The bugs and technical issues listed below were be resolved in GEOS-Chem 12.0.2, which was released on 10 Oct 2018.

Module or area Issue that was resolved Git commit ID
Diagnostics
  1. Fixed local-time averaging in ND51 and ND51b satellite timeseries diagnostics
  1. 14b29d3d
Specialty simulations
  1. Correct missing BC/OC biomass emissions and aerosol drydep in TOMAS simulations
  2. Avoid double-counting of emissions in the CO2 simulation
  1. 6a944b92
  2. 8320e73d

--Bob Yantosca (talk) 19:16, 16 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.0.1

The bugs and technical issues listed below were resolved in GEOS-Chem 12.0.1, which was released on 24 Aug 2018.

Module or area Issue that was resolved Git commit ID
Diagnostics
  1. Fix typo when registering the State_Chm%SSAlk field
  2. Fix mis-indexing in the ND05 diagnostic
  1. 55d16873
  2. 8e118c0e
Mercury
  1. Fixes for the Hg specialty simualtion: Restore biomass emissions and do not double-count anthropogenic emissions
  1. e1e6668b
Structural updates
  1. Nullify rather than deallocate 3D met arrays for compatibility with gfortran 6+ when using GCHP
  2. Add a more robust test for netCDF-Fortran in Makefile_header.mk
  3. Fix compilation issues encountered with GNU Fortran 8.2.0
  4. Fix compilation issues encountered with Intel Fortran 18
  1. ff7b0c3c
  2. a4d55055
  3. e0959563
  4. 9833fff4

--Bob Yantosca (talk) 19:20, 16 July 2019 (UTC)

Issues resolved in GEOS-Chem 12.0.0

The bugs and technical issues listed below were resolved in GEOS-Chem 12.0.0, which was released on 10 Aug 2018.

Module or area Issue that was resolved
Aerosols
Chemistry
Diagnostics
Emissions
Specialty simulations
Structural updates
  • Initial structural updates to interface GEOS-Chem into WRF
  • Now always declare the netCDF time variable with an unlimited dimension

Issues resolved in GEOS-Chem v11-01

The bugs and technical issues listed below were resolved in GEOS-Chem v11-01. Also be sure to visit our Known issues caused by compiler bugs wiki page for a list of compiler-related issues and workarounds.

Module or area Issue that was resolved
Aerosol-only simulation
CH4 simulation
Chemistry
CO2 simulation
Cloud convection
Compiler / Fortran issues Compiler issues:

Fortran language issues:

Diagnostics
Emissions (via HEMCO)
Mercury and POPs simulations
Met fields and derived quantities
netCDF I/O
Photolysis
Regridding
RRTMG radiative transfer model
Marine POA simulations
Radon-Lead-Beryllium simulation
Species database and definitions of physical constants
Tagged CO simulation
Tagged O3 simulation
TOMAS aerosol microphysics
Various structural updates
Wet deposition

--Bob Yantosca (talk) 19:57, 23 January 2017 (UTC)

Bugs and fixes in older GEOS-Chem versions

For a complete list of bugs and fixes in older GEOS-Chem versions, please see:

--Bob Yantosca (talk) 20:47, 2 January 2019 (UTC)