Difference between revisions of "Bugs and fixes"
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Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more general information about some frequently encountered errors. Also visit our [[Currently unresolved issues in GEOS-Chem]] and [[Known issues caused by compiler bugs]] wiki pages for more information about unresolved issues. | Please also be sure to visit our [[Common GEOS-Chem error messages]] wiki page for more general information about some frequently encountered errors. Also visit our [[Currently unresolved issues in GEOS-Chem]] and [[Known issues caused by compiler bugs]] wiki pages for more information about unresolved issues. | ||
− | == | + | == Bugs and fixes lists have now been migrated to Github == |
− | + | We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there. | |
− | {| border=1 cellspacing=0 cellpadding=5 | + | {| border=1 cellspacing=0 cellpadding=5 |
|-bgcolor="#CCCCCC" | |-bgcolor="#CCCCCC" | ||
− | ! | + | !Version |
− | ! | + | !Released |
− | ! | + | !colspan="2"|List of bugs and issues (now posted on the listed Github repository) |
− | + | ||
|-valign="top" | |-valign="top" | ||
− | | | + | |[[GEOS-Chem 12#12.8.0|12.8.0]] |
+ | |TBD | ||
+ | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] | ||
| | | | ||
− | + | *[https://github.com/geoschem/geos-chem/milestone/7 '''Milestone 12.8.0''' (open issues)] | |
− | + | *[https://github.com/geoschem/geos-chem/milestone/7?closed=1 '''Milestone 12.8.0''' (closed issues)] | |
− | + | ||
|-valign="top" | |-valign="top" | ||
− | | | + | |[[GEOS-Chem 12#12.7.2|12.7.2]] |
− | | | + | |09 Mar 2020 |
− | + | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] | |
− | | | + | |[https://github.com/geoschem/geos-chem/milestone/11?closed=1 '''Milestone 12.7.2'''] |
− | + | ||
− | | | + | |-valign="top" |
+ | |[[GEOS-Chem 12#12.7.1|12.7.1]] | ||
+ | |19 Feb 2020 | ||
+ | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] | ||
+ | |[https://github.com/geoschem/geos-chem/milestone/9?closed=1 '''Milestone 12.7.1'''] | ||
− | --[[ | + | |-valign="top" |
+ | |[[GEOS-Chem 12#12.7.0|12.7.0]] | ||
+ | |03 Feb 2020 | ||
+ | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] | ||
+ | |[https://github.com/geoschem/geos-chem/milestone/4?closed=1 '''Milestone 12.7.0'''] | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[GEOS-Chem 12#12.6.3|12.6.3]] | ||
+ | |25 Nov 2019 | ||
+ | |[https://github.com/geoschem/gchp geoschem/gchp] | ||
+ | |[https://github.com/geoschem/gchp/milestone/2?closed=1 '''Milestone 12.6.3'''] | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[GEOS-Chem 12#12.6.2|12.6.2]] | ||
+ | |15 Nov 2019 | ||
+ | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] | ||
+ | |[https://github.com/geoschem/geos-chem/milestone/6?closed=1 '''Milestone 12.6.2'''] | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[GEOS-Chem 12#12.6.1|12.6.1]] | ||
+ | |28 Oct 2019 | ||
+ | |[https://github.com/geoschem/geos-chem geoschem/geos-chem] | ||
+ | |[https://github.com/geoschem/geos-chem/milestone/5?closed=1 '''Milestone 12.6.1'''] | ||
+ | |||
+ | |-valign="top" | ||
+ | |width="80px"|[[GEOS-Chem 12#12.6.0|12.6.0]] | ||
+ | |width="100px"|18 Oct 2019 | ||
+ | |width="200px"|[https://github.com/geoschem/geos-chem geoschem/geos-chem] | ||
+ | |width="400px"|[https://github.com/geoschem/geos-chem/milestone/2?closed=1 '''Milestone 12.6.0'''] | ||
+ | |||
+ | |} | ||
== Issues resolved in GEOS-Chem 12.5.0 == | == Issues resolved in GEOS-Chem 12.5.0 == | ||
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|Chemistry and Photolysis | |Chemistry and Photolysis | ||
| | | | ||
− | #[[#Allow_for_SZA_to_98_degrees_when_getting_photolysis_rates|Allow for SZA to 98 degrees when getting photolysis rates]] | + | #[[FAST-JX_v7.0_photolysis_mechanism#Allow_for_SZA_to_98_degrees_when_getting_photolysis_rates|Allow for SZA to 98 degrees when getting photolysis rates]] |
#[[GEOS-Chem_v11-02#Code_cleanup_suggestions|Move Fast-JX .dat files from the <tt>geos-chem-unittest</tt> repository to <tt>gcgrid/ExtData</tt>]] | #[[GEOS-Chem_v11-02#Code_cleanup_suggestions|Move Fast-JX .dat files from the <tt>geos-chem-unittest</tt> repository to <tt>gcgrid/ExtData</tt>]] | ||
| | | | ||
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#[https://github.com/geoschem/geos-chem-unittest/commit/642dd0af874e9ddfa87d096158a61f1d9f9c0fe6 642dd0af] | #[https://github.com/geoschem/geos-chem-unittest/commit/642dd0af874e9ddfa87d096158a61f1d9f9c0fe6 642dd0af] | ||
#[https://github.com/geoschem/geos-chem-unittest/commit/e71d0d6754faeed0adcfc9ed94846677551337f3 e71d0d67] | #[https://github.com/geoschem/geos-chem-unittest/commit/e71d0d6754faeed0adcfc9ed94846677551337f3 e71d0d67] | ||
− | #[https://github.com/geoschem/geos-chem-unittest/commit/ | + | #[https://github.com/geoschem/geos-chem-unittest/commit/20451cb47bf8dace9b9fc7878bca6720b6fe3a56 20451cb4] |
#[https://github.com/geoschem/geos-chem/commit/3f62e74954136cbbabda166a453cbd3811689ac4 3f62e749] | #[https://github.com/geoschem/geos-chem/commit/3f62e74954136cbbabda166a453cbd3811689ac4 3f62e749] | ||
#[https://github.com/geoschem/geos-chem/commit/820b8d7d9b25a50f79cf6688a359c9dcc91d8c2b 820b8d7d] | #[https://github.com/geoschem/geos-chem/commit/820b8d7d9b25a50f79cf6688a359c9dcc91d8c2b 820b8d7d] | ||
Line 423: | Line 457: | ||
#[[GEOS-Chem_12#Fix_regional_tile_file_used_for_APEI_inventory_in_GCHP|Remove erroneous 180 degree longitude shift in APEI regridding]] | #[[GEOS-Chem_12#Fix_regional_tile_file_used_for_APEI_inventory_in_GCHP|Remove erroneous 180 degree longitude shift in APEI regridding]] | ||
| | | | ||
− | |||
− | |||
|-valign="top" | |-valign="top" | ||
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*Move GCHP run directory creation from GEOS-Chem Unit Tester to GCHP repository | *Move GCHP run directory creation from GEOS-Chem Unit Tester to GCHP repository | ||
| | | | ||
− | |||
|} | |} | ||
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|Diagnostics | |Diagnostics | ||
| | | | ||
− | #[[#Fixed_local-time_averaging_in_ND51_and_ND51b_satellite_timeseries_diagnostics|Fixed local-time averaging in ND51 and ND51b satellite timeseries diagnostics]] | + | #[[GEOS-Chem 12#Fixed_local-time_averaging_in_ND51_and_ND51b_satellite_timeseries_diagnostics|Fixed local-time averaging in ND51 and ND51b satellite timeseries diagnostics]] |
| | | | ||
#[https://github.com/geoschem/geos-chem/commit/14b29d3df84994a9251dd9b2fb0082b75c4affbc 14b29d3d] | #[https://github.com/geoschem/geos-chem/commit/14b29d3df84994a9251dd9b2fb0082b75c4affbc 14b29d3d] | ||
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|Diagnostics | |Diagnostics | ||
| | | | ||
− | #[[#Fix typo when registering the State_Chm%SSAlk field|Fix typo when registering the <tt>State_Chm%SSAlk</tt> field]] | + | #[[GEOS-Chem 12#Fix typo when registering the State_Chm%SSAlk field|Fix typo when registering the <tt>State_Chm%SSAlk</tt> field]] |
#[[Sulfate aerosols#Fix mis-indexing in the ND05 diagnostic|Fix mis-indexing in the ND05 diagnostic]] | #[[Sulfate aerosols#Fix mis-indexing in the ND05 diagnostic|Fix mis-indexing in the ND05 diagnostic]] | ||
| | | |
Revision as of 17:34, 20 March 2020
On this page we list the GEOS-Chem specific bugs and issues that users have recently encountered, and how to fix them.
Please also be sure to visit our Common GEOS-Chem error messages wiki page for more general information about some frequently encountered errors. Also visit our Currently unresolved issues in GEOS-Chem and Known issues caused by compiler bugs wiki pages for more information about unresolved issues.
Contents
- 1 Bugs and fixes lists have now been migrated to Github
- 2 Issues resolved in GEOS-Chem 12.5.0
- 3 Issues resolved in GEOS-Chem 12.4.0
- 4 Issues resolved in GEOS-Chem 12.3.2
- 5 Issues resolved in GEOS-Chem 12.3.1
- 6 Issues resolved in GEOS-Chem 12.3.0
- 7 Issues resolved in GEOS-Chem 12.2.1
- 8 Issues resolved in GEOS-Chem 12.2.0
- 9 Issues resolved in GEOS-Chem 12.1.1
- 10 Issues resolved in GEOS-Chem 12.1.0
- 11 Issues resolved in GEOS-Chem 12.0.3
- 12 Issues resolved in GEOS-Chem 12.0.2
- 13 Issues resolved in GEOS-Chem 12.0.1
- 14 Issues resolved in GEOS-Chem 12.0.0
- 15 Issues resolved in GEOS-Chem v11-01
- 16 Bugs and fixes in older GEOS-Chem versions
Bugs and fixes lists have now been migrated to Github
We have been migrating bug reports to our GEOS-Chem issue tracker, which is located on our Github repository: https://github.com/geoschem/geos-chem/issues/. We recommend that you also look through both the open and closed issues on this page, as your issue might be listed there.
Version | Released | List of bugs and issues (now posted on the listed Github repository) | |
---|---|---|---|
12.8.0 | TBD | geoschem/geos-chem | |
12.7.2 | 09 Mar 2020 | geoschem/geos-chem | Milestone 12.7.2 |
12.7.1 | 19 Feb 2020 | geoschem/geos-chem | Milestone 12.7.1 |
12.7.0 | 03 Feb 2020 | geoschem/geos-chem | Milestone 12.7.0 |
12.6.3 | 25 Nov 2019 | geoschem/gchp | Milestone 12.6.3 |
12.6.2 | 15 Nov 2019 | geoschem/geos-chem | Milestone 12.6.2 |
12.6.1 | 28 Oct 2019 | geoschem/geos-chem | Milestone 12.6.1 |
12.6.0 | 18 Oct 2019 | geoschem/geos-chem | Milestone 12.6.0 |
Issues resolved in GEOS-Chem 12.5.0
The bugs and technical issues listed below will be resolved GEOS-Chem 12.5.0, release date TBD.
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Chemistry | ||
Diagnostics | ||
Structural updates |
|
|
Emissions |
|
|
Fixes affecting GCHP only: | ||
Structural updates |
|
--Bob Yantosca (talk) 17:03, 15 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.4.0
The bugs and technical issues listed below will be resolved GEOS-Chem 12.4.0, release date TBD.
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Photolysis |
--Bob Yantosca (talk) 17:04, 15 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.3.2
The bugs and technical issues listed below will be resolved GEOS-Chem 12.3.2.
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Chemistry | ||
Photolysis | ||
Fixes affecting GCHP only: | ||
Emissions |
|
--Bob Yantosca (talk) 16:37, 15 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.3.1
The bugs and technical issues listed below were resolved GEOS-Chem 12.3.1 (release 08 Apr 2019).
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Diagnostics | ||
Structural |
--Bob Yantosca (talk) 20:06, 16 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.3.0
The bugs and technical issues listed below were resolved GEOS-Chem 12.3.0 (release date TBD).
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Diagnostics / Restart files | ||
Emissions |
--Bob Yantosca (talk) 15:53, 21 March 2019 (UTC)
Issues resolved in GEOS-Chem 12.2.1
The bugs and technical issues listed below were resolved GEOS-Chem 12.2.1 (release date 28 Feb 2019).
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Diagnostics / Restart files | ||
CO2 simulation |
| |
TOMAS simulations | ||
Fixes affecting GCHP only: | ||
Emissions etc. |
| |
Met fields |
|
--Bob Yantosca (talk) 17:03, 15 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.2.0
The bugs and technical issues listed below were resolved GEOS-Chem 12.2.0 (release date 19 Feb 2019).
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Diagnostics | ||
Fixes affecting GCHP only: | ||
Restart files |
|
--Bob Yantosca (talk) 20:02, 14 March 2019 (UTC)
Issues resolved in GEOS-Chem 12.1.1
The bugs and technical issues listed below were resolved in GEOS-Chem 12.1.1, which was released on 13 Dec 2018.
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Compilation issues | ||
Diagnostics | ||
Tagged CO simulation | ||
Fixes affecting GCHP only: | ||
Transport (FvDycore) |
--Bob Yantosca (talk) 14:12, 16 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.1.0
The bugs and technical issues listed below were resolved in GEOS-Chem 12.1.0, which was released on 26 Nov 2018.
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
CH4 simulation | ||
Chemistry and Photolysis | ||
Emissions |
|
|
PBL Mixing | ||
Tagged CO simulation | ||
Fixes affecting GCHP only: | ||
Emissions (GCHP) | ||
Structural (GCHP) |
|
--Bob Yantosca (talk) 15:12, 16 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.0.3
The bugs and technical issues listed below were resolved in GEOS-Chem 12.0.3, which was released on 16 Oct 2018.
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Fixes affecting GCHP only: | ||
Emissions (GCHP) |
--Bob Yantosca (talk) 22:01, 21 December 2018 (UTC)
Issues resolved in GEOS-Chem 12.0.2
The bugs and technical issues listed below were be resolved in GEOS-Chem 12.0.2, which was released on 10 Oct 2018.
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Diagnostics | ||
Specialty simulations |
--Bob Yantosca (talk) 19:16, 16 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.0.1
The bugs and technical issues listed below were resolved in GEOS-Chem 12.0.1, which was released on 24 Aug 2018.
Module or area | Issue that was resolved | Git commit ID |
---|---|---|
Diagnostics | ||
Mercury | ||
Structural updates |
|
--Bob Yantosca (talk) 19:20, 16 July 2019 (UTC)
Issues resolved in GEOS-Chem 12.0.0
The bugs and technical issues listed below were resolved in GEOS-Chem 12.0.0, which was released on 10 Aug 2018.
Issues resolved in GEOS-Chem v11-01
The bugs and technical issues listed below were resolved in GEOS-Chem v11-01. Also be sure to visit our Known issues caused by compiler bugs wiki page for a list of compiler-related issues and workarounds.
--Bob Yantosca (talk) 19:57, 23 January 2017 (UTC)
Bugs and fixes in older GEOS-Chem versions
For a complete list of bugs and fixes in older GEOS-Chem versions, please see:
--Bob Yantosca (talk) 20:47, 2 January 2019 (UTC)