Difference between revisions of "Benchmark/GEOS-Chem 12.5.0"
(→Benchmark assessment form) |
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*Compiled with ifort 17.0.4 | *Compiled with ifort 17.0.4 | ||
*Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz) | *Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz) | ||
− | *Wall time: | + | *Wall time: 07:32:26 |
− | *[[Scalability|CPU time / wall time]]: | + | *[[Scalability|CPU time / wall time]]: 21.1184 |
− | *% of ideal performance: | + | *% of ideal performance: 87.99% |
− | *Memory: | + | *Memory: 13.8486 GB |
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|[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | |[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | ||
− | | | + | |http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/GC_12.5.0_Aug08.results.html |
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|Global mean OH from log file (% change): | |Global mean OH from log file (% change): | ||
− | |12. | + | |12.3699948768189 x 10<sup>5</sup> molec/cm<sup>3</sup> (-0.82%) |
|-valign="top" | |-valign="top" | ||
|Methyl chloroform lifetime (% change): | |Methyl chloroform lifetime (% change): | ||
− | | | + | | 4.9566 (1.22%) |
|-valign="top" | |-valign="top" | ||
|Methane lifetime (% change): | |Methane lifetime (% change): | ||
− | | | + | | 8.3442 years (1.26%) |
|-valign="top" | |-valign="top" | ||
|List all SURFACE SPECIES, SURFACE J-VALUES<br>AND COLUMN AOD SPECIES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>: | |List all SURFACE SPECIES, SURFACE J-VALUES<br>AND COLUMN AOD SPECIES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>: | ||
| | | | ||
+ | * Primary: O3 CO OH NOx | ||
+ | * Aerosols: NH4 NIT SO4 DST1 AERI BrSALA BrSALC ISALA ISALC NITs SO4s SOA_Complex SOA_Simple | ||
+ | * Nitrogen: NOy NOx HNO2 HNO3 HNO4 IPMN NIT NO NO2 NO3 N2O5 MPN PAN PPN NHx NH3 NH4 | ||
+ | * ROy: H2O2 H HO2 O1D OH RO2 | ||
+ | * Sulfur: SOx DMS SO2 SO4 | ||
+ | * Iodine: Iy IxOy I I2 IBr ICl IO INO2 IONO2 CH2I2 HI HOI OIO | ||
+ | * Bromine: Bry BrOx Br Br2 BrCl BrNO2 BrNO3 BrO HOBr HBr | ||
+ | * Chlorine: Cly ClOx Cl ClO Cl2 Cl2O2 ClOO ClNO2 ClNO3 HOCl HCl HCFCs OClO | ||
+ | * Primary_Organics: ALK4 BENZ C2H6 C3H8 PRPE TOLU XYLE ISOP MTPA MTPO LIMO GLYX HCOOH MAP RCHO | ||
+ | * Secondary_Organics: ACET MEK MVK ALD2 CH2O HPALD MP ISOPN IEPOX ACTA EOH | ||
+ | * J-Values: CCl4 CFC11 CFC113 CFC114 CFC115 CFC12 CH2Cl2 CH3CCl3 CH3Cl HCFC123 HCFC141b HCFC142b N2O O2 | ||
+ | * Column AOD: Dust OCPI SO4 SOA_from_Aqueous_ISOP Total | ||
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|List all 500 hPa SPECIES and<br>500 hPA J-VALUES for which<br><tt>ABS(MAX(frac. diff.) > 0.1</tt>: | |List all 500 hPa SPECIES and<br>500 hPA J-VALUES for which<br><tt>ABS(MAX(frac. diff.) > 0.1</tt>: | ||
| | | | ||
− | + | * Primary: OH NOx | |
+ | * Aerosols: NH4 NIT SO4 DST1 AERI BrSALA BrSALC ISALC NITs SO4s SOA_Complex | ||
+ | * Nitrogen: NOx HNO2 HNO4 IPMN NIT NO NO2 NO3 N2O5 MPN PAN PPN NHx NH3 NH4 | ||
+ | * ROy: OH | ||
+ | * Sulfur: SOx DMS SO2 SO4 | ||
+ | * Iodine: I2 ICl INO2 IONO2 CH2I2 HI OIO | ||
+ | * Bromine: BrOx Br Br2 BrCl BrNO2 BrNO3 BrO HOBr HBr | ||
+ | * Chlorine: ClOx Cl ClO Cl2 Cl2O2 ClOO ClNO2 ClNO3 HOCl HCl OClO | ||
+ | * Primary_Organics: ALK4 BENZ C2H6 C3H8 PRPE TOLU XYLE ISOP MTPA MTPO LIMO GLYX HCOOH MAP RCHO | ||
+ | * Secondary_Organics: ACET MEK MVK ALD2 HPALD MP ISOPN IEPOX ACTA EOH | ||
+ | * J-Values: None | ||
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|List all ZONAL MEAN SPECIES<br>and ZONAL MEAN J-VALUES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>: | |List all ZONAL MEAN SPECIES<br>and ZONAL MEAN J-VALUES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>: | ||
| | | | ||
− | + | * Primary: OH NOx | |
+ | * Aerosols: NH4 NIT SO4 DST1 BrSALA BrSALC NITs SO4s SOA_Complex | ||
+ | * Nitrogen: NOy NOx HNO2 HNO3 HNO4 IPMN NIT NO NO2 NO3 N2O5 MPN PAN PPN NH3 NH4 | ||
+ | * ROy: OH RO2 | ||
+ | * Sulfur: SOx SO2 SO4 | ||
+ | * Iodine: I2 IBr ICl INO2 IONO2 CH2I2 HI OIO | ||
+ | * Bromine: BrOx Br Br2 BrCl BrNO2 BrNO3 BrO HOBr HBr | ||
+ | * Chlorine: Cly ClOx Cl ClO Cl2 Cl2O2 ClOO ClNO2 ClNO3 HOCl OClO | ||
+ | * Primary_Organics: ALK4 C2H6 C3H8 PRPE TOLU XYLE ISOP MTPA MTPO LIMO GLYX HCOOH MAP RCHO | ||
+ | * Secondary_Organics: ACET MEK MVK ALD2 CH2O HPALD ISOPN IEPOX ACTA EOH | ||
+ | * J-Values: None | ||
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|List all EMISSIONS for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>: | |List all EMISSIONS for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>: | ||
| | | | ||
− | + | * Anthro: ALD2 ALK4 BCPI BCPO C2H6 C3H8 CO HAC MEK NH3 NO pFe PRPE SO2 SO4 SOAP | |
+ | * Biogenic: ACET ALD2 EOH ISOP LIMO PRPE SOAP SOAS | ||
+ | * Monoterp: CO | ||
+ | * Ship: CO HNO3 NO2 NO O3 SO2 SOAP | ||
+ | * Total: ACET ALD2 ALK4 BCPI BCPO C2H6 C3H8 CO EOH GLYX ISOP MEK MGLY MTPA NH3 NO pFe PRPE SO2 SO4 SOAP | ||
+ | * VolcDegas: SO2 | ||
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Revision as of 21:50, 13 August 2019
This page includes information about all benchmark simulations for GEOS-Chem 12.5.0.
Contents
GEOS-Chem Classic 1-month benchmark
Benchmark plots
Enable PDF bookmarks in the files linked below to navigate between species. See the Species in GEOS-Chem wiki page for species definitions and details.
Species Category1 | Plots | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Principal
O3, CO, OH, NOx |
sfc | 500hPa | full column | stratosphere | sfc | |
Aerosols
NH4, NIT, SO4, DST1, DST2, DST3, DST4, BC, OC, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, SOA_Simple, SOA_Complex |
sfc | 500hPa | full column | stratosphere | sfc | AOD |
Bromine
Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH4Br, CH2Br2, CH2Br2, CH3Br3, HOBr, HBr |
sfc | 500hPa | full column | stratosphere | sfc | |
Chlorine
Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH4CCl3, HOCl, HCl, Halons, HCFCs, OClO |
sfc | 500hPa | full column | stratosphere | -- | |
Iodine
Iy, IxOy, I, I2, IBr, ICl, IO, INO2, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO |
sfc | 500hPa | full column | stratosphere | sfc | |
Nitrogen
NOy, NOx, HNO2, HNO3, HNO4, IMPN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4 |
sfc | 500hPa | full column | stratosphere | sfc | |
Primary Organics
ALK4, BENZ, CH4, C2H6, C2H4, C3H8, PRPE, TOLU, XYLE, ISOP, MTPA, MTPO, LIMO, GLYX, HCOOH, MAP, MBO, MOH, RCHO |
sfc | 500hPa | full column | stratosphere | sfc | |
Secondary Organics
ACET, MEK, MVK, ALD2, CH2O, HPALD, MP, ISOPN, IEPOX, ACTA, EOH, MOH |
sfc | 500hPa | full column | stratosphere | sfc | |
ROy
H2O2, H, H2, H2O, HO2, O1D, OH, RO2 |
sfc | 500hPa | full column | stratosphere | -- | |
Sulfur
SOx, DMS, OCS, SO2, SO4 |
sfc | 500hPa | full column | stratosphere | sfc | |
Emissions by HEMCO category |
Total,
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
Emissions tables | ||||
J-values | sfc | 500hPa | full column | stratosphere | -- | -- |
Plots still created by GAMAP | ||||||
Budget | -- | -- | -- | -- | -- | Ox and CO budgets |
NOTES:
- Species category and lumped species definitions are simple to adjust. Updating them requires only editing the json files.
- All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
Benchmark assessment form
Description | |||||||||||||||||||||||||||||||||
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New features added into GEOS-Chem |
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Version, resolution, met fields used: | GEOS-FP (72L), 4x5, July 2016 | ||||||||||||||||||||||||||||||||
1-month benchmark finished on: | Sat Aug 10 06:32:29 EDT 2019 | ||||||||||||||||||||||||||||||||
Performance statistics: |
| ||||||||||||||||||||||||||||||||
Compared to previous benchmark: | 12.4.0 | ||||||||||||||||||||||||||||||||
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Emissions, Photolysis, Chemistry, Other (please specify): Diagnostics | ||||||||||||||||||||||||||||||||
Unit test results may be viewed at: | http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/GC_12.5.0_Aug08.results.html | ||||||||||||||||||||||||||||||||
Metrics | |||||||||||||||||||||||||||||||||
Global mean OH from log file (% change): | 12.3699948768189 x 105 molec/cm3 (-0.82%) | ||||||||||||||||||||||||||||||||
Methyl chloroform lifetime (% change): | 4.9566 (1.22%) | ||||||||||||||||||||||||||||||||
Methane lifetime (% change): | 8.3442 years (1.26%) | ||||||||||||||||||||||||||||||||
List all SURFACE SPECIES, SURFACE J-VALUES AND COLUMN AOD SPECIES for which ABS(MAX(frac. diff))) > 0.1: |
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Comments on SURFACE differences: | TBD | ||||||||||||||||||||||||||||||||
List all 500 hPa SPECIES and 500 hPA J-VALUES for which ABS(MAX(frac. diff.) > 0.1: |
| ||||||||||||||||||||||||||||||||
Comments on 500 hPa differences: | TBD | ||||||||||||||||||||||||||||||||
List all ZONAL MEAN SPECIES and ZONAL MEAN J-VALUES for which ABS(MAX(frac. diff))) > 0.1: |
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Comments on ZONAL MEAN differences: | TBD | ||||||||||||||||||||||||||||||||
List all EMISSIONS for which ABS(MAX(frac. diff))) > 0.1: |
| ||||||||||||||||||||||||||||||||
Comments on EMISSIONS differences: | TBD | ||||||||||||||||||||||||||||||||
Additional or summary comments: | TBD | ||||||||||||||||||||||||||||||||
Approval | |||||||||||||||||||||||||||||||||
Requires further investigation: | TBD | ||||||||||||||||||||||||||||||||
Approved by: | |||||||||||||||||||||||||||||||||
Date of approval: |
GCHP 1-month benchmark
The following sections contain validation plots for GCHP 12.5.0.
Comparison of GCHP versions
This table contains plots comparing GCHP 12.3.2 (Ref) and GCHP 12.5.0 (Dev) for a 1-month simulation.
Category1 | Plots2 | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Primary | sfc | 500hPa | full column | stratosphere | full column | |
Aerosols | sfc | 500hPa | full column | stratosphere | full column | Column AOD |
Bromine | sfc | 500hPa | full column | stratosphere | full column | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | full column | |
Nitrogen | sfc | 500hPa | full column | stratosphere | full column | |
Primary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Sulfur | sfc | 500hPa | full column | stratosphere | full column | |
Emissions by HEMCO category |
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
Emission totals |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
Comparison of GCHP and GEOS-Chem Classic
This table contains plots comparing GEOS-Chem Classic 12.5.0 (Ref) against GCHP 12.5.0 (Dev) for a 1-month simulation.
Category1 | Plots2 | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Primary | sfc | 500hPa | full column | stratosphere | full column | |
Aerosols | sfc | 500hPa | full column | stratosphere | full column | Column AOD |
Bromine | sfc | 500hPa | full column | stratosphere | full column | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | full column | |
Nitrogen | sfc | 500hPa | full column | stratosphere | full column | |
Primary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | full column | |
Sulfur | sfc | 500hPa | full column | stratosphere | full column | |
Emissions by HEMCO category |
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
Emission totals |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
GCHP and GEOS-Chem Classic difference of differences
This table contains plots comparing the difference [GCHP 12.5.0 - GCHP 12.3.2] against the difference [GC Classic 12.5.0 - GC Classic 12.3.0], taken from 1-month benchmark simulations.
Category1 | Plots2 | |||
---|---|---|---|---|
Level Map | Zonal Mean | |||
Primary | sfc | 500hPa | full column | stratosphere |
Aerosols | sfc | 500hPa | full column | stratosphere |
Bromine | sfc | 500hPa | full column | stratosphere |
Chlorine | sfc | 500hPa | full column | stratosphere |
Iodine | sfc | 500hPa | full column | stratosphere |
Nitrogen | sfc | 500hPa | full column | stratosphere |
Primary Organics | sfc | 500hPa | full column | stratosphere |
Secondary Organics | sfc | 500hPa | full column | stratosphere |
Sulfur | sfc | 500hPa | full column | stratosphere |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
NOTES:
- At present, we have only created the diff-of-diffs plots for species concentration. This can be extended to other categories in the future.