Difference between revisions of "Benchmark/GEOS-Chem 12.5.0"

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(GEOS-Chem Classic 12.5.0 BPCH only)
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__FORCETOC__
 
__FORCETOC__
[[Image:Page is under construction.jpg]]
 
 
<span style="color:red">'''''NOTE: This page is based on test simulations used to identify problems --- the official benchmark results have not been posted yet!'''''</span>
 
  
 
This page includes information about all benchmark simulations for [[GEOS-Chem 12#12.5.0|GEOS-Chem 12.5.0]].  
 
This page includes information about all benchmark simulations for [[GEOS-Chem 12#12.5.0|GEOS-Chem 12.5.0]].  
Line 9: Line 6:
  
 
=== Benchmark plots ===
 
=== Benchmark plots ===
 
These benchmarks were primarily made with [https://github.com/geoschem/gcpy GCPy]. Some benchmark plots created by GAMAP still remain because they have not been recreated in GCPy yet.
 
  
 
{| border=1 cellspacing=0 cellpadding=5
 
{| border=1 cellspacing=0 cellpadding=5
  
 
|-
 
|-
!colspan="1" bgcolor="#CCFFFF"|Category<sup>1</sup>
+
!colspan="1" bgcolor="#CCFFFF" width="325px"|Species Category<sup>1</sup>
 
!colspan="5" bgcolor="#CCFFFF"|Plots
 
!colspan="5" bgcolor="#CCFFFF"|Plots
 
!colspan="1" bgcolor="#CCFFFF"|Additional Information
 
!colspan="1" bgcolor="#CCFFFF"|Additional Information
  
 
|-
 
|-
!colspan="1"|
+
|colspan="1"|''Use PDF bookmarks to navigate between [[Species_in_GEOS-Chem|species]]''
 
!colspan="2"|Level Map
 
!colspan="2"|Level Map
 
!colspan="2"|Zonal Mean
 
!colspan="2"|Zonal Mean
Line 27: Line 22:
  
 
|-valign="top"
 
|-valign="top"
|Primary
+
|O3, CO, OH, NOx
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary/Primary_Surface.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary/Primary_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary/Primary_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary/Primary_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary/Primary_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary/Primary_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary/Primary_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary/Primary_Strat_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary/Primary_Emissions.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary/Primary_Emissions.pdf sfc]
 
|
 
|
  
 
|-valign="top"
 
|-valign="top"
|Aerosols
+
|'''Aerosols'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Aerosols/Aerosols_Surface.pdf sfc]
+
NH4, NIT, SO4, DST1, DST2, DST3, DST4, BC, OC, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, SOA_Simple, SOA_Complex
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Aerosols/Aerosols_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Aerosols/Aerosols_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Aerosols/Aerosols_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Aerosols/Aerosols_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Aerosols/Aerosols_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Aerosols/Aerosols_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Aerosols/Aerosols_Emissions.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Aerosols/Aerosols_Strat_ZonalMean.pdf stratosphere]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Aerosols/Aerosols_ColumnOptDepth.pdf AOD]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Aerosols/Aerosols_Emissions.pdf sfc]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Aerosols/Aerosols_ColumnOptDepth.pdf AOD]
  
 
|-valign="top"
 
|-valign="top"
|Bromine
+
|'''Bromine'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Bromine/Bromine_Surface.pdf sfc]
+
Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH4Br, CH2Br2, CH2Br2, CH3Br3, HOBr, HBr
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Bromine/Bromine_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Bromine/Bromine_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Bromine/Bromine_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Bromine/Bromine_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Bromine/Bromine_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Bromine/Bromine_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Bromine/Bromine_Emissions.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Bromine/Bromine_Strat_ZonalMean.pdf stratosphere]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Bromine/Bromine_Emissions.pdf sfc]
 
|
 
|
  
 
|-valign="top"
 
|-valign="top"
|Chlorine
+
|'''Chlorine'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Chlorine/Chlorine_Surface.pdf sfc]
+
Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH4CCl3, HOCl, HCl, Halons, HCFCs, OClO
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Chlorine/Chlorine_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Chlorine/Chlorine_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Chlorine/Chlorine_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Chlorine/Chlorine_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Chlorine/Chlorine_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Chlorine/Chlorine_FullColumn_ZonalMean.pdf full column]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Chlorine/Chlorine_Strat_ZonalMean.pdf stratosphere]
 
| --
 
| --
 
|
 
|
  
 
|-valign="top"
 
|-valign="top"
|Iodine
+
|'''Iodine'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Iodine/Iodine_Surface.pdf sfc]
+
Iy, IxOy, I, I2, IBr, ICl, IO, INO2, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Iodine/Iodine_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Iodine/Iodine_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Iodine/Iodine_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Iodine/Iodine_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Iodine/Iodine_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Iodine/Iodine_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Iodine/Iodine_Emissions.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Iodine/Iodine_Strat_ZonalMean.pdf stratosphere]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Iodine/Iodine_Emissions.pdf sfc]
 
|
 
|
  
 
|-valign="top"
 
|-valign="top"
|Nitrogen
+
|'''Nitrogen'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Nitrogen/Nitrogen_Surface.pdf sfc]
+
NOy, NOx, HNO2, HNO3, HNO4, IMPN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Nitrogen/Nitrogen_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Nitrogen/Nitrogen_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Nitrogen/Nitrogen_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Nitrogen/Nitrogen_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Nitrogen/Nitrogen_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Nitrogen/Nitrogen_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Nitrogen/Nitrogen_Emissions.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Nitrogen/Nitrogen_Strat_ZonalMean.pdf stratosphere]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Nitrogen/Nitrogen_Emissions.pdf sfc]
 
|
 
|
  
 
|-valign="top"
 
|-valign="top"
|Primary Organics
+
|'''Primary Organics'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary_Organics/Primary_Organics_Surface.pdf sfc]
+
ALK4, BENZ, CH4, C2H6, C2H4, C3H8, PRPE, TOLU, XYLE, ISOP, MTPA, MTPO, LIMO, GLYX, HCOOH, MAP, MBO, MOH, RCHO
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary_Organics/Primary_Organics_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary_Organics/Primary_Organics_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary_FullColumn_Organics/Primary_Organics_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary_Organics/Primary_Organics_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary_Strat_Organics/Primary_Organics_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary_FullColumn_Organics/Primary_Organics_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Primary_Organics/Primary_Organics_Emissions.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary_Strat_Organics/Primary_Organics_ZonalMean.pdf stratosphere]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Primary_Organics/Primary_Organics_Emissions.pdf sfc]
 
|
 
|
  
 
|-valign="top"
 
|-valign="top"
|Secondary Organics
+
|'''Secondary Organics'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Secondary_Organics/Secondary_Organics_Surface.pdf sfc]
+
ACET, MEK, MVK, ALD2, CH2O, HPALD, MP, ISOPN, IEPOX, ACTA, EOH, MOH
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Secondary_Organics/Secondary_Organics_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Secondary_Organics/Secondary_Organics_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Secondary_FullColumn_Organics/Secondary_Organics_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Secondary_Organics/Secondary_Organics_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Secondary_Strat_Organics/Secondary_Organics_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Secondary_FullColumn_Organics/Secondary_Organics_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Secondary_Organics/Secondary_Organics_Emissions.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Secondary_Strat_Organics/Secondary_Organics_ZonalMean.pdf stratosphere]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Secondary_Organics/Secondary_Organics_Emissions.pdf sfc]
 
|
 
|
  
 
|-valign="top"
 
|-valign="top"
|ROy
+
|'''ROy'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/ROy/ROy_Surface.pdf sfc]
+
H2O2, H, H2, H2O, HO2, O1D, OH, RO2
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/ROy/ROy_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/ROy/ROy_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/ROy/ROy_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/ROy/ROy_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/ROy/ROy_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/ROy/ROy_FullColumn_ZonalMean.pdf full column]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/ROy/ROy_Strat_ZonalMean.pdf stratosphere]
 
| --
 
| --
 
|
 
|
  
 
|-valign="top"
 
|-valign="top"
|Sulfur
+
|'''Sulfur'''
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Sulfur/Sulfur_Surface.pdf sfc]
+
SOx, DMS, OCS, SO2, SO4
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Sulfur/Sulfur_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Sulfur/Sulfur_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Sulfur/Sulfur_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Sulfur/Sulfur_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Sulfur/Sulfur_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Sulfur/Sulfur_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Sulfur/Sulfur_Emissions.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Sulfur/Sulfur_Strat_ZonalMean.pdf stratosphere]
 +
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Sulfur/Sulfur_Emissions.pdf sfc]
 
|
 
|
 
 
  
 
|-valign="top"
 
|-valign="top"
 
|Emissions by HEMCO category
 
|Emissions by HEMCO category
 
!colspan="5"|  
 
!colspan="5"|  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Total_Emissions.pdf Total],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Total_Emissions.pdf Total],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Aircraft_Emissions.pdf Aircraft],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Aircraft_Emissions.pdf Aircraft],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Anthro_Emissions.pdf Anthro],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Anthro_Emissions.pdf Anthro],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Bioburn_Emissions.pdf Bioburn],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Bioburn_Emissions.pdf Bioburn],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Biofuel_Emissions.pdf Biofuel],
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Biofuel_Emissions.pdf Biofuel],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Biogenic_Emissions.pdf Biogenic],<br>  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Biogenic_Emissions.pdf Biogenic],<br>  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Lightning_Emissions.pdf Lightning],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Lightning_Emissions.pdf Lightning],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Monoterp_Emissions.pdf Monoterp],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Monoterp_Emissions.pdf Monoterp],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Natural_Emissions.pdf Natural],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Natural_Emissions.pdf Natural],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Ocean_Emissions.pdf Ocean],
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Ocean_Emissions.pdf Ocean],
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Seabirds_Emissions.pdf Seabirds],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Seabirds_Emissions.pdf Seabirds],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Senesc_Emissions.pdf SenescingPlants],<br>  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Senesc_Emissions.pdf SenescingPlants],<br>  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Ship_Emissions.pdf Ship],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Ship_Emissions.pdf Ship],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Soil_Emissions.pdf Soil],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Soil_Emissions.pdf Soil],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/VolcDegas_Emissions.pdf VolcDegas],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/VolcDegas_Emissions.pdf VolcDegas],  
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/VolcErupt_Emissions.pdf VolcErupt],  
+
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/VolcErupt_Emissions.pdf VolcErupt],  
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/Emissions/Emission_totals.txt Emissions tables]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/Emissions/Emission_totals.txt Emissions tables]
  
 
|-valign="top"
 
|-valign="top"
 
|J-values
 
|J-values
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/JValues/JVal_Surface.pdf sfc]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/JValues/JVal_Surface.pdf sfc]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/JValues/JVal_500hPa.pdf 500hPa]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/JValues/JVal_500hPa.pdf 500hPa]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/JValues/JVal_FullColumn_ZonalMean.pdf full column]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/JValues/JVal_FullColumn_ZonalMean.pdf full column]
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/JValues/JVal_Strat_ZonalMean.pdf stratosphere]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/JValues/JVal_Strat_ZonalMean.pdf stratosphere]
 
| --
 
| --
 
| --
 
| --
Line 158: Line 160:
 
| --
 
| --
 
| --
 
| --
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/GC_12.5.0.budget.txt Ox and CO budgets]
+
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/GC_12.5.0.budget.txt Ox and CO budgets]
  
 
|}
 
|}
 
<sup>1</sup>'''Benchmark category definitions:''' [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/benchmark_categories.json benchmark_categories.json]<br>
 
<sup>2</sup>'''Lumped species definitions:''' [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/lumped_species.json lumped_species.json]<br>
 
  
 
'''NOTES:'''
 
'''NOTES:'''
#[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/benchmark_categories.json Category] and [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Official/lumped_species.json lumped species] definitions are simple to adjust. Updating them requires only editing the json files.
+
#[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/benchmark_categories.json Species category] and [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Plots/lumped_species.json lumped species] definitions are simple to adjust. Updating them requires only editing the json files.
 
#All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
 
#All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
  
 
=== Benchmark assessment form ===
 
=== Benchmark assessment form ===
 
[[Image:Page is under construction.jpg]]
 
 
<span style="color:red">'''''NOTE: This page is based on test simulations used to identify problems --- the official benchmark results have not been posted yet!'''''</span>
 
  
 
{| border=1 cellspacing=0 cellpadding=5
 
{| border=1 cellspacing=0 cellpadding=5
Line 280: Line 275:
 
|List all SURFACE SPECIES, SURFACE J-VALUES<br>AND COLUMN AOD SPECIES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|List all SURFACE SPECIES, SURFACE J-VALUES<br>AND COLUMN AOD SPECIES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
|
* Primary: O3 CO OH NOx
 
* Aerosols: NH4 NIT SO4 AERI BrSALA BrSALC ISALA ISALC NITs SO4s SOA_Simple
 
* Nitrogen: NOy NOx HNO2 HNO3 HNO4 IPMN NIT NO NO2 NO3 N2O5 MPN PAN PPN NHx NH3 NH4
 
* ROy: H2O2 H HO2 O1D OH RO2
 
* Sulfur: SOx DMS SO2 SO4
 
* Iodine: Iy IxOy I I2 IBr ICl IO INO2 IONO2 HI HOI OIO
 
* Bromine: Bry BrOx Br Br2 BrCl BrNO2 BrNO3 BrO HOBr HBr
 
* Chlorine: Cly ClOx Cl ClO Cl2 Cl2O2 ClOO ClNO2 ClNO3 HOCl HCl OClO
 
* Primary_Organics: ALK4 BENZ C2H6 C3H8 PRPE TOLU XYLE ISOP MTPA MTPO LIMO GLYX MAP RCHO
 
* Secondary_Organics: ACET MEK MVK ALD2 CH2O HPALD MP ISOPN IEPOX ACTA EOH
 
* J-Values: CCl4 CFC11 CFC113 CFC114 CFC115 CH2Cl2 CH3CCl3 HCFC123 HCFC141b N2O O2
 
* Column AOD: SO4 SOA_from_Aqueous_ISOP Total
 
  
 
|-valign="top"
 
|-valign="top"
Line 300: Line 283:
 
|List all 500 hPa SPECIES and<br>500 hPA J-VALUES for which<br><tt>ABS(MAX(frac. diff.) > 0.1</tt>:
 
|List all 500 hPa SPECIES and<br>500 hPA J-VALUES for which<br><tt>ABS(MAX(frac. diff.) > 0.1</tt>:
 
|
 
|
* Aerosols: NH4 NIT BrSALA BrSALC SO4s
+
 
* Nitrogen: IPMN NIT PPN NHx NH3 NH4
+
* Sulfur: DMS SO2
+
* Iodine: I2 INO2 CH2I2
+
* Bromine: BrOx Br Br2 BrO HOBr HBr
+
* Chlorine: Cl2O2 ClNO2 HCl OClO
+
* Primary_Organics: ALK4 C2H6 C3H8 PRPE TOLU XYLE ISOP MTPA LIMO GLYX MAP RCHO
+
* Secondary_Organics: ACET MEK MVK ALD2 HPALD ISOPN IEPOX EOH
+
  
 
|-valign="top"
 
|-valign="top"
Line 316: Line 292:
 
|List all ZONAL MEAN SPECIES<br>and ZONAL MEAN J-VALUES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|List all ZONAL MEAN SPECIES<br>and ZONAL MEAN J-VALUES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
|
* Aerosols: NIT BrSALA BrSALC NITs SO4s
+
 
* Nitrogen: NOy HNO3 IPMN NIT NO3 N2O5 MPN PPN NH3
+
* Sulfur: SOx SO2
+
* Iodine: I2 IBr ICl INO2 IONO2 CH2I2 OIO
+
* Bromine: BrOx Br Br2 BrCl BrNO2 BrNO3 BrO HOBr HBr
+
* Chlorine: Cly ClOx Cl Cl2 Cl2O2 ClOO ClNO2 ClNO3 HOCl OClO
+
* Primary_Organics: ALK4 C2H6 C3H8 PRPE ISOP MTPA LIMO GLYX RCHO
+
* Secondary_Organics: MEK MVK HPALD ISOPN IEPOX
+
  
 
|-valign="top"
 
|-valign="top"
Line 332: Line 301:
 
|List all EMISSIONS for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|List all EMISSIONS for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
|
* Anthro: ALD2 ALK4 C2H6 C3H8 CO MEK NH3 NO pFe PRPE SO2 SO4 SOAP
+
 
* Ship: CO HNO3 NO2 NO O3 SO2 SOAP
+
* Total: ALD2 ALK4 C2H6 C3H8 CO GLYX MEK MGLY NH3 NO pFe PRPE SO2 SO4 SOAP
+
  
 
|-valign="top"
 
|-valign="top"
Line 362: Line 329:
  
 
== GCHP 1-month benchmark ==
 
== GCHP 1-month benchmark ==
 
[[Image:Page is under construction.jpg]]
 
 
<span style="color:red">'''''NOTE: The GCHP benchmark has not been completed yet.  The links below will not work.'''''</span>
 
  
 
The following sections contain validation plots for GCHP 12.5.0.
 
The following sections contain validation plots for GCHP 12.5.0.
Line 704: Line 667:
 
'''NOTES:'''
 
'''NOTES:'''
 
#At present, we have only created the diff-of-diffs plots for species concentration.  This can be extended to other categories in the future.
 
#At present, we have only created the diff-of-diffs plots for species concentration.  This can be extended to other categories in the future.
 
== Special benchmarks ==
 
 
In this section we list information about special (i.e. non-official) benchmark simulations that were performed.  These are often necessary to validate certain model features.
 
 
=== GEOS-Chem Classic 12.5.0 BPCH only ===
 
 
These benchmarks were primarily made with [https://github.com/geoschem/gcpy GCPy]. Some benchmark plots created by GAMAP still remain because they have not been recreated in GCPy yet.
 
 
<span style="color:red">'''''NOTE: This page is based on test simulations used to identify problems --- the official benchmark results have not been posted yet!'''''</span>
 
 
{| border=1 cellspacing=0 cellpadding=5
 
 
|-
 
!colspan="1" bgcolor="#CCFFFF"|Category<sup>1</sup>
 
!colspan="5" bgcolor="#CCFFFF"|Plots
 
!colspan="1" bgcolor="#CCFFFF"|Additional Information
 
 
|-
 
!colspan="1"|
 
!colspan="2"|Level Map
 
!colspan="2"|Zonal Mean
 
!colspan="1"|Emissions
 
!colspan="1"|
 
 
|-valign="top"
 
|Primary
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Primary/Primary_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12,5.0/GCC/Bpch_Only/output/Primary/Primary_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12,5.0/GCC/Bpch_Only/output/Primary/Primary_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12,5.0/GCC/Bpch_Only/output/Primary/Primary_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Primary/Primary_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Aerosols
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Aerosols/Aerosols_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Aerosols/Aerosols_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Aerosols/Aerosols_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Aerosols/Aerosols_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Aerosols/Aerosols_Emissions.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Aerosols/Aerosols_ColumnOptDepth.pdf AOD]
 
 
|-valign="top"
 
|Bromine
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Bromine/Bromine_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Bromine/Bromine_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Bromine/Bromine_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Bromine/Bromine_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Bromine/Bromine_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Chlorine
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Chlorine/Chlorine_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Chlorine/Chlorine_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Chlorine/Chlorine_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Chlorine/Chlorine_Strat_ZonalMean.pdf stratosphere]
 
| --
 
|
 
 
|-valign="top"
 
|Iodine
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Iodine/Iodine_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Iodine/Iodine_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Iodine/Iodine_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Iodine/Iodine_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Iodine/Iodine_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Nitrogen
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Nitrogen/Nitrogen_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Nitrogen/Nitrogen_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Nitrogen/Nitrogen_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Nitrogen/Nitrogen_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Nitrogen/Nitrogen_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Primary Organics
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Primary_Organics/Primary_Organics_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Primary_Organics/Primary_Organics_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Primary_FullColumn_Organics/Primary_Organics_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Primary_Strat_Organics/Primary_Organics_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Primary_Organics/Primary_Organics_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Secondary Organics
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Secondary_Organics/Secondary_Organics_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Secondary_Organics/Secondary_Organics_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Secondary_FullColumn_Organics/Secondary_Organics_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Secondary_Strat_Organics/Secondary_Organics_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Secondary_Organics/Secondary_Organics_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|ROy
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/ROy/ROy_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/ROy/ROy_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/ROy/ROy_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/ROy/ROy_Strat_ZonalMean.pdf stratosphere]
 
| --
 
|
 
 
|-valign="top"
 
|Sulfur
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Sulfur/Sulfur_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Sulfur/Sulfur_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Sulfur/Sulfur_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Sulfur/Sulfur_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Sulfur/Sulfur_Emissions.pdf sfc]
 
|
 
 
 
 
|-valign="top"
 
|Emissions by HEMCO category
 
!colspan="5"|
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Total_Emissions.pdf Total],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Aircraft_Emissions.pdf Aircraft],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Anthro_Emissions.pdf Anthro],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Bioburn_Emissions.pdf Bioburn],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Biofuel_Emissions.pdf Biofuel],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Biogenic_Emissions.pdf Biogenic],<br>
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Lightning_Emissions.pdf Lightning],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Monoterp_Emissions.pdf Monoterp],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Natural_Emissions.pdf Natural],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Ocean_Emissions.pdf Ocean],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Seabirds_Emissions.pdf Seabirds],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Senesc_Emissions.pdf SenescingPlants],<br>
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Ship_Emissions.pdf Ship],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Soil_Emissions.pdf Soil],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/VolcDegas_Emissions.pdf VolcDegas],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/VolcErupt_Emissions.pdf VolcErupt],
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/Emissions/Emission_totals.txt Emissions tables]
 
 
|-valign="top"
 
|J-values
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/JValues/JVal_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/JValues/JVal_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/JValues/JVal_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/JValues/JVal_Strat_ZonalMean.pdf stratosphere]
 
| --
 
| --
 
 
|-valign="top"
 
!colspan="7" bgcolor="#CCCCCC"|Plots still created by GAMAP
 
 
|-valign="top"
 
|Budget
 
| --
 
| --
 
| --
 
| --
 
| --
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/GC_12.5.0.budget.txt Ox and CO budgets]
 
 
|}
 
 
<sup>1</sup>'''Benchmark category definitions:''' [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/benchmark_categories.json benchmark_categories.json]<br>
 
<sup>2</sup>'''Lumped species definitions:''' [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/lumped_species.json lumped_species.json]<br>
 
 
'''NOTES:'''
 
#[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/benchmark_categories.json Category] and [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/Bpch_Only/output/lumped_species.json lumped species] definitions are simple to adjust. Updating them requires only editing the json files.
 
#All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
 
 
==== Benchmark assessment form for GEOS-Chem 12.5.0 BPCH only ====
 
 
{| border=1 cellspacing=0 cellpadding=5
 
|-bgcolor="#CCCCCC"
 
!width="325px"|Description
 
!
 
|-valign="top"
 
|New features added into GEOS-Chem
 
|[[#Benchmark assessment form|Same as listed above]]
 
 
|-valign="top"
 
|Version, resolution, met fields used:
 
|GEOS-FP (72L), 4x5, July 2016
 
 
|-valign="top"
 
|1-month benchmark finished on:
 
|TBD
 
 
|-valign="top"
 
|Performance statistics:
 
|
 
*Compiled with ifort 17.0.4
 
*Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz)
 
*Wall time: TBD
 
*[[Scalability|CPU time / wall time]]: TBD
 
*% of ideal performance: TBD
 
*Memory: TBD
 
 
|-valign="top"
 
|Compared to previous benchmark:
 
|[[GEOS-Chem_12#12.4.0|12.4.0]]
 
 
|-valign="top"
 
|This update will impact:<br>(select all that apply with '''boldface''')
 
|Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Emissions, Photolysis, Chemistry, Other (please specify): '''Diagnostics'''
 
 
|-valign="top"
 
|[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at:
 
|TBD
 
 
|-valign="top" bgcolor="#cccccc"
 
!Metrics
 
!
 
 
|-valign="top"
 
|Global mean OH from log file (% change):
 
|12.6185908670819 x 10<sup>5</sup> molec/cm<sup>3</sup> (TBD)
 
 
|-valign="top"
 
|Methyl chloroform lifetime (% change):
 
|TBD (TBD)
 
 
|-valign="top"
 
|Methane lifetime (% change):
 
|TBD years (TBD
 
 
|-valign="top"
 
|List all SURFACE SPECIES, SURFACE J-VALUES<br>AND COLUMN AOD SPECIES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
 
|-valign="top"
 
|Comments on SURFACE differences:
 
|TBD
 
 
|-valign="top"
 
|List all 500 hPa SPECIES and<br>500 hPA J-VALUES for which<br><tt>ABS(MAX(frac. diff.) > 0.1</tt>:
 
|
 
 
|-valign="top"
 
|Comments on 500 hPa differences:
 
|TBD
 
 
|-valign="top"
 
|List all ZONAL MEAN SPECIES<br>and ZONAL MEAN J-VALUES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
 
|-valign="top"
 
|Comments on ZONAL MEAN differences:
 
|TBD
 
 
|-valign="top"
 
|List all EMISSIONS for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
 
|-valign="top"
 
|Comments on EMISSIONS differences:
 
|TBD
 
 
|-valign="top"
 
|Additional or summary comments:
 
|TBD
 
 
|-bgcolor="#cccccc"
 
!Approval
 
!
 
 
|-valign="top"
 
|Requires further investigation:
 
|TBD
 
 
|-valign="top"
 
|Approved by:
 
|
 
 
|-valign="top"
 
|Date of approval:
 
|
 
|}
 
 
=== GEOS-Chem Classic 12.5.0 netCDF only ===
 
 
These benchmarks were primarily made with [https://github.com/geoschem/gcpy GCPy]. Some benchmark plots created by GAMAP still remain because they have not been recreated in GCPy yet.
 
 
{| border=1 cellspacing=0 cellpadding=5
 
 
|-
 
!colspan="1" bgcolor="#CCFFFF"|Category<sup>1</sup>
 
!colspan="5" bgcolor="#CCFFFF"|Plots
 
!colspan="1" bgcolor="#CCFFFF"|Additional Information
 
 
|-
 
!colspan="1"|
 
!colspan="2"|Level Map
 
!colspan="2"|Zonal Mean
 
!colspan="1"|Emissions
 
!colspan="1"|
 
 
|-valign="top"
 
|Primary
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Primary/Primary_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12,5.0/GCC/NetCDF_Only/output/Primary/Primary_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12,5.0/GCC/NetCDF_Only/output/Primary/Primary_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12,5.0/GCC/NetCDF_Only/output/Primary/Primary_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Primary/Primary_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Aerosols
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Aerosols/Aerosols_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Aerosols/Aerosols_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Aerosols/Aerosols_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Aerosols/Aerosols_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Aerosols/Aerosols_Emissions.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Aerosols/Aerosols_ColumnOptDepth.pdf AOD]
 
 
|-valign="top"
 
|Bromine
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Bromine/Bromine_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Bromine/Bromine_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Bromine/Bromine_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Bromine/Bromine_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Bromine/Bromine_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Chlorine
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Chlorine/Chlorine_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Chlorine/Chlorine_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Chlorine/Chlorine_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Chlorine/Chlorine_Strat_ZonalMean.pdf stratosphere]
 
| --
 
|
 
 
|-valign="top"
 
|Iodine
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Iodine/Iodine_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Iodine/Iodine_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Iodine/Iodine_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Iodine/Iodine_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Iodine/Iodine_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Nitrogen
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Nitrogen/Nitrogen_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Nitrogen/Nitrogen_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Nitrogen/Nitrogen_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Nitrogen/Nitrogen_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Nitrogen/Nitrogen_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Primary Organics
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Primary_Organics/Primary_Organics_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Primary_Organics/Primary_Organics_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Primary_FullColumn_Organics/Primary_Organics_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Primary_Strat_Organics/Primary_Organics_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Primary_Organics/Primary_Organics_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|Secondary Organics
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Secondary_Organics/Secondary_Organics_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Secondary_Organics/Secondary_Organics_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Secondary_FullColumn_Organics/Secondary_Organics_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Secondary_Strat_Organics/Secondary_Organics_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Secondary_Organics/Secondary_Organics_Emissions.pdf sfc]
 
|
 
 
|-valign="top"
 
|ROy
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/ROy/ROy_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/ROy/ROy_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/ROy/ROy_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/ROy/ROy_Strat_ZonalMean.pdf stratosphere]
 
| --
 
|
 
 
|-valign="top"
 
|Sulfur
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Sulfur/Sulfur_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Sulfur/Sulfur_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Sulfur/Sulfur_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Sulfur/Sulfur_Strat_ZonalMean.pdf stratosphere]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Sulfur/Sulfur_Emissions.pdf sfc]
 
|
 
 
 
 
|-valign="top"
 
|Emissions by HEMCO category
 
!colspan="5"|
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Total_Emissions.pdf Total],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Aircraft_Emissions.pdf Aircraft],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Anthro_Emissions.pdf Anthro],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Bioburn_Emissions.pdf Bioburn],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Biofuel_Emissions.pdf Biofuel],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Biogenic_Emissions.pdf Biogenic],<br>
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Lightning_Emissions.pdf Lightning],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Monoterp_Emissions.pdf Monoterp],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Natural_Emissions.pdf Natural],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Ocean_Emissions.pdf Ocean],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Seabirds_Emissions.pdf Seabirds],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Senesc_Emissions.pdf SenescingPlants],<br>
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Ship_Emissions.pdf Ship],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Soil_Emissions.pdf Soil],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/VolcDegas_Emissions.pdf VolcDegas],
 
[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/VolcErupt_Emissions.pdf VolcErupt],
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/Emissions/Emission_totals.txt Emissions tables]
 
 
|-valign="top"
 
|J-values
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/JValues/JVal_Surface.pdf sfc]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/JValues/JVal_500hPa.pdf 500hPa]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/JValues/JVal_FullColumn_ZonalMean.pdf full column]
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/JValues/JVal_Strat_ZonalMean.pdf stratosphere]
 
| --
 
| --
 
 
|-valign="top"
 
!colspan="7" bgcolor="#CCCCCC"|Plots still created by GAMAP
 
 
|-valign="top"
 
|Budget
 
| --
 
| --
 
| --
 
| --
 
| --
 
|[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/GC_12.5.0.budget.txt Ox and CO budgets]
 
 
|}
 
 
<sup>1</sup>'''Benchmark category definitions:''' [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/benchmark_categories.json benchmark_categories.json]<br>
 
<sup>2</sup>'''Lumped species definitions:''' [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/lumped_species.json lumped_species.json]<br>
 
 
'''NOTES:'''
 
#[http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/benchmark_categories.json Category] and [http://ftp.as.harvard.edu/gcgrid/geos-chem/1mo_benchmarks/GC_12/12.5.0/GCC/NetCDF_Only/output/lumped_species.json lumped species] definitions are simple to adjust. Updating them requires only editing the json files.
 
#All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.
 
 
==== Benchmark assessment form for GEOS-Chem 12.5.0 netCDF only ====
 
 
{| border=1 cellspacing=0 cellpadding=5
 
|-bgcolor="#CCCCCC"
 
!width="325px"|Description
 
!
 
|-valign="top"
 
|New features added into GEOS-Chem
 
|[[#Benchmark assessment form|Same as listed above]]
 
 
|-valign="top"
 
|Version, resolution, met fields used:
 
|GEOS-FP (72L), 4x5, July 2016
 
 
|-valign="top"
 
|1-month benchmark finished on:
 
|TBD
 
 
|-valign="top"
 
|Performance statistics:
 
|
 
*Compiled with ifort 17.0.4
 
*Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz)
 
*Wall time: TBD
 
*[[Scalability|CPU time / wall time]]: TBD
 
*% of ideal performance: TBD
 
*Memory: TBD
 
 
|-valign="top"
 
|Compared to previous benchmark:
 
|[[GEOS-Chem_12#12.4.0|12.4.0]]
 
 
|-valign="top"
 
|This update will impact:<br>(select all that apply with '''boldface''')
 
|Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Emissions, Photolysis, Chemistry, Other (please specify): '''Diagnostics'''
 
 
|-valign="top"
 
|[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at:
 
|TBD
 
 
|-valign="top" bgcolor="#cccccc"
 
!Metrics
 
!
 
 
|-valign="top"
 
|Global mean OH from log file (% change):
 
|12.6185890695857 x 10<sup>5</sup> molec/cm<sup>3</sup> (TBD)
 
 
|-valign="top"
 
|Methyl chloroform lifetime (% change):
 
|TBD (TBD)
 
 
|-valign="top"
 
|Methane lifetime (% change):
 
|TBD years (TBD
 
 
|-valign="top"
 
|List all SURFACE SPECIES, SURFACE J-VALUES<br>AND COLUMN AOD SPECIES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
 
|-valign="top"
 
|Comments on SURFACE differences:
 
|TBD
 
 
|-valign="top"
 
|List all 500 hPa SPECIES and<br>500 hPA J-VALUES for which<br><tt>ABS(MAX(frac. diff.) > 0.1</tt>:
 
|
 
 
|-valign="top"
 
|Comments on 500 hPa differences:
 
|TBD
 
 
|-valign="top"
 
|List all ZONAL MEAN SPECIES<br>and ZONAL MEAN J-VALUES for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
 
|-valign="top"
 
|Comments on ZONAL MEAN differences:
 
|TBD
 
 
|-valign="top"
 
|List all EMISSIONS for which<br><tt>ABS(MAX(frac. diff))) > 0.1</tt>:
 
|
 
 
|-valign="top"
 
|Comments on EMISSIONS differences:
 
|TBD
 
 
|-valign="top"
 
|Additional or summary comments:
 
|TBD
 
 
|-bgcolor="#cccccc"
 
!Approval
 
!
 
 
|-valign="top"
 
|Requires further investigation:
 
|TBD
 
 
|-valign="top"
 
|Approved by:
 
|
 
 
|-valign="top"
 
|Date of approval:
 
|
 
|}
 

Revision as of 19:29, 13 August 2019


This page includes information about all benchmark simulations for GEOS-Chem 12.5.0.

GEOS-Chem Classic 1-month benchmark

Benchmark plots

Species Category1 Plots Additional Information
Use PDF bookmarks to navigate between species Level Map Zonal Mean Emissions
O3, CO, OH, NOx sfc 500hPa full column stratosphere sfc
Aerosols

NH4, NIT, SO4, DST1, DST2, DST3, DST4, BC, OC, AERI, BrSALA, BrSALC, ISALA, ISALC, NITs, SALA, SALC, SO4s, SOA_Simple, SOA_Complex

sfc 500hPa full column stratosphere sfc AOD
Bromine

Bry, BrOx, Br, Br2, BrCl, BrNO2, BrNO3, BrO, CH4Br, CH2Br2, CH2Br2, CH3Br3, HOBr, HBr

sfc 500hPa full column stratosphere sfc
Chlorine

Cly, ClOx, Cl, ClO, Cl2, Cl2O2, ClOO, ClNO2, ClNO3, CCl4, CFCs, CH3Cl, CH2Cl2, CH4CCl3, HOCl, HCl, Halons, HCFCs, OClO

sfc 500hPa full column stratosphere --
Iodine

Iy, IxOy, I, I2, IBr, ICl, IO, INO2, IONO2, CH3I, CH2I2, CH2ICl, CH2IBr, HI, HOI, OIO

sfc 500hPa full column stratosphere sfc
Nitrogen

NOy, NOx, HNO2, HNO3, HNO4, IMPN, NIT, NO, NO2, NO3, N2O5, MPN, PAN, PPN, N2O, NHx, NH3, NH4

sfc 500hPa full column stratosphere sfc
Primary Organics

ALK4, BENZ, CH4, C2H6, C2H4, C3H8, PRPE, TOLU, XYLE, ISOP, MTPA, MTPO, LIMO, GLYX, HCOOH, MAP, MBO, MOH, RCHO

sfc 500hPa full column stratosphere sfc
Secondary Organics

ACET, MEK, MVK, ALD2, CH2O, HPALD, MP, ISOPN, IEPOX, ACTA, EOH, MOH

sfc 500hPa full column stratosphere sfc
ROy

H2O2, H, H2, H2O, HO2, O1D, OH, RO2

sfc 500hPa full column stratosphere --
Sulfur

SOx, DMS, OCS, SO2, SO4

sfc 500hPa full column stratosphere sfc
Emissions by HEMCO category

Total, Aircraft, Anthro, Bioburn, Biofuel, Biogenic,
Lightning, Monoterp, Natural, Ocean, Seabirds, SenescingPlants,
Ship, Soil, VolcDegas, VolcErupt,

Emissions tables
J-values sfc 500hPa full column stratosphere -- --
Plots still created by GAMAP
Budget -- -- -- -- -- Ox and CO budgets

NOTES:

  1. Species category and lumped species definitions are simple to adjust. Updating them requires only editing the json files.
  2. All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.

Benchmark assessment form

Description
New features added into GEOS-Chem
Feature Submitted by
Updates that will affect full-chemistry simulations
Bug fix: make sure stratospheric BrY concentrations are read properly each month Lyatt Jaeglé (U. Washington)
Retire obsolete emission inventories Eloise Marais (Leicester)
Emissions and Deposition Working Group
Fixes for GFED4 emissions, including:
  • Change the HEMCO cycling flag so that the model crashes if it doesn't find the right GFED year
  • Remove the 27% scaling of POG to POA and emit 1:1 instead
Sidhant Pai (MIT)
Corrections for CFCs in the chemistry mechanism Xuan Wang (Harvard)
Fix typo in CLD_PARAMS routine in gckpp_HetRates.F90 Stephen Steenrod (NASA GMAO)
Updates that will NOT affect full-chemistry simulations
Enable GEOS-Chem "Classic" netCDF (History) diagnostics to be subsetted vertically and horizontally Bob Yantosca (GCST)
Enable accurate cloud pH diagnostic calculation via post-processing Jonathan Moch (Harvard)
Updates that will only affect GCHP
Update GCHP to use MAPL v1.0.0 and ESMF v8.0.0 beta snapshot 28 Lizzie Lundgren (GCST)
Version, resolution, met fields used: GEOS-FP (72L), 4x5, July 2016
1-month benchmark finished on: Fri May 24 06:51:03 EDT 2019
Performance statistics:
  • Compiled with ifort 17.0.4
  • Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz)
  • Wall time: TBD
  • CPU time / wall time: TBD
  • % of ideal performance: TBD
  • Memory: TBD
Compared to previous benchmark: 12.4.0
This update will impact:
(select all that apply with boldface)
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Emissions, Photolysis, Chemistry, Other (please specify): Diagnostics
Unit test results may be viewed at: TBD
Metrics
Global mean OH from log file (% change): 12.6185673606414 x 105 molec/cm3 (TBD)
Methyl chloroform lifetime (% change): TBD (TBD)
Methane lifetime (% change): TBD years (TBD
List all SURFACE SPECIES, SURFACE J-VALUES
AND COLUMN AOD SPECIES for which
ABS(MAX(frac. diff))) > 0.1:
Comments on SURFACE differences: TBD
List all 500 hPa SPECIES and
500 hPA J-VALUES for which
ABS(MAX(frac. diff.) > 0.1:


Comments on 500 hPa differences: TBD
List all ZONAL MEAN SPECIES
and ZONAL MEAN J-VALUES for which
ABS(MAX(frac. diff))) > 0.1:


Comments on ZONAL MEAN differences: TBD
List all EMISSIONS for which
ABS(MAX(frac. diff))) > 0.1:


Comments on EMISSIONS differences: TBD
Additional or summary comments: TBD
Approval
Requires further investigation: TBD
Approved by:
Date of approval:

GCHP 1-month benchmark

The following sections contain validation plots for GCHP 12.5.0.

Comparison of GCHP versions

This table contains plots comparing GCHP 12.3.2 (Ref) and GCHP 12.5.0 (Dev) for a 1-month simulation.

Category1 Plots2 Additional Information
Level Map Zonal Mean Emissions
Primary sfc 500hPa full column stratosphere full column
Aerosols sfc 500hPa full column stratosphere full column Column AOD
Bromine sfc 500hPa full column stratosphere full column
Chlorine sfc 500hPa full column stratosphere --
Iodine sfc 500hPa full column stratosphere full column
Nitrogen sfc 500hPa full column stratosphere full column
Primary Organics sfc 500hPa full column stratosphere full column
Secondary Organics sfc 500hPa full column stratosphere full column
Sulfur sfc 500hPa full column stratosphere full column
Emissions by HEMCO category

Aircraft, Anthro, Bioburn, Biofuel, Biogenic,
Lightning, Monoterp, Natural, Ocean, Seabirds, SenescingPlants,
Ship, Soil, Total, VolcDegas, VolcErupt,

Emission totals

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json

Comparison of GCHP and GEOS-Chem Classic

This table contains plots comparing GEOS-Chem Classic 12.5.0 (Ref) against GCHP 12.5.0 (Dev) for a 1-month simulation.

Category1 Plots2 Additional Information
Level Map Zonal Mean Emissions
Primary sfc 500hPa full column stratosphere full column
Aerosols sfc 500hPa full column stratosphere full column Column AOD
Bromine sfc 500hPa full column stratosphere full column
Chlorine sfc 500hPa full column stratosphere --
Iodine sfc 500hPa full column stratosphere full column
Nitrogen sfc 500hPa full column stratosphere full column
Primary Organics sfc 500hPa full column stratosphere full column
Secondary Organics sfc 500hPa full column stratosphere full column
Sulfur sfc 500hPa full column stratosphere full column
Emissions by HEMCO category

Aircraft, Anthro, Bioburn, Biofuel, Biogenic,
Lightning, Monoterp, Natural, Ocean, Seabirds, SenescingPlants,
Ship, Soil, Total, VolcDegas, VolcErupt,

Emission totals

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json


GCHP and GEOS-Chem Classic difference of differences

This table contains plots comparing the difference [GCHP 12.5.0 - GCHP 12.3.2] against the difference [GC Classic 12.5.0 - GC Classic 12.3.0], taken from 1-month benchmark simulations.

Category1 Plots2
Level Map Zonal Mean
Primary sfc 500hPa full column stratosphere
Aerosols sfc 500hPa full column stratosphere
Bromine sfc 500hPa full column stratosphere
Chlorine sfc 500hPa full column stratosphere
Iodine sfc 500hPa full column stratosphere
Nitrogen sfc 500hPa full column stratosphere
Primary Organics sfc 500hPa full column stratosphere
Secondary Organics sfc 500hPa full column stratosphere
Sulfur sfc 500hPa full column stratosphere

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json

NOTES:

  1. At present, we have only created the diff-of-diffs plots for species concentration. This can be extended to other categories in the future.