Difference between revisions of "Benchmark/GEOS-Chem 12.5.0"

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|New features added into GEOS-Chem
 
|New features added into GEOS-Chem
 
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{| border=1 cellspacing=0 cellpadding=5  
 
{| border=1 cellspacing=0 cellpadding=5  
 
|-bgcolor="#CCCCCC"
 
|-bgcolor="#CCCCCC"
 
!width="500px"|Feature
 
!width="500px"|Feature
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!width="200px"|Submitted by
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!width="300px"|Submitted by
  
 
|-valign="top"
 
|-valign="top"
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!colspan="4" bgcolor="#CCFFFF"|Updates that will affect full-chemistry simulations
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!colspan="2" bgcolor="#CCFFFF"|Updates that will affect full-chemistry simulations
  
 
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|[[GEOS-Chem_12#Corrections_for_CFCs_in_the_chemistry_mechanism|Corrections for CFCs in the chemistry mechanism]]
 
|[[GEOS-Chem_12#Corrections_for_CFCs_in_the_chemistry_mechanism|Corrections for CFCs in the chemistry mechanism]]
 
|Xuan Wang (Harvard)
 
|Xuan Wang (Harvard)
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|Bug fix
 
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|-valign="top"
 
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!colspan="4" bgcolor="#CCFFFF"|Updates that will NOT affect full-chemistry simulations
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!colspan="2" bgcolor="#CCFFFF"|Updates that will NOT affect full-chemistry simulations
  
 
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|-valign="top"
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!colspan="4" bgcolor="#CCFFFF"|Updates that will only affect GCHP
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!colspan="2" bgcolor="#CCFFFF"|Updates that will only affect GCHP
  
 
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|Performance statistics:
 
|Performance statistics:
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|qqq
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*Compiled with ifort 17.0.4
 
*Compiled with ifort 17.0.4
 
*Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz)
 
*Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz)
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|Global mean OH from log file (% change):
 
|Global mean OH from log file (% change):
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|12.6185673606414 x 10<sup>5</sup> molec/cm<sup>3</sup> (0.91%)
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|12.6185673606414 x 10<sup>5</sup> molec/cm<sup>3</sup> (TBD)
  
 
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|Methyl chloroform lifetime (% change):
 
|Methyl chloroform lifetime (% change):
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|4.8037 years (-2.92%)
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|TBD (TBD)
  
 
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|-valign="top"
 
|Methane lifetime (% change):
 
|Methane lifetime (% change):
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|8.0807 years (-3.09%)
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|TBD years (TBD
  
 
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Revision as of 14:54, 2 July 2019

Page is under construction.jpg This page includes information about all benchmark simulations for GEOS-Chem 12.5.0.

GEOS-Chem Classic 1-month benchmark

Benchmark plots

These benchmarks were primarily made with GCPy. Some benchmark plots created by GAMAP still remain because they have not been recreated in GCPy yet.

Category1 Plots Additional Information
Level Map Zonal Mean Emissions
Primary sfc 500hPa full column stratosphere sfc
Aerosols sfc 500hPa full column stratosphere sfc AOD
Bromine sfc 500hPa full column stratosphere sfc
Chlorine sfc 500hPa full column stratosphere --
Iodine sfc 500hPa full column stratosphere sfc
Nitrogen sfc 500hPa full column stratosphere sfc
Primary Organics sfc 500hPa full column stratosphere sfc
Secondary Organics sfc 500hPa full column stratosphere sfc
ROy sfc 500hPa full column stratosphere --
Sulfur sfc 500hPa full column stratosphere sfc
Emissions by HEMCO category

Total, Aircraft, Anthro, Bioburn, Biofuel, Biogenic,
Lightning, Monoterp, Natural, Ocean, Seabirds, SenescingPlants,
Ship, Soil, VolcDegas, VolcErupt,

Emissions tables
Plots still created by GAMAP
J-values maps differences ratios -- --
Budget -- -- -- -- -- Ox and CO budgets

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json

NOTES:

  1. Category and lumped species definitions are simple to adjust. Updating them requires only editing the json files.
  2. All plots created with GCPy have PDF bookmarks. If you do not see them in your browser try using a different browser (not Safari) or installing an Adobe Acrobat plug-in.

Benchmark assessment form

Description
New features added into GEOS-Chem
Feature Submitted by
Updates that will affect full-chemistry simulations
Bug fix: make sure stratospheric BrY concentrations are read properly each month Lyatt Jaeglé (U. Washington)
Retire obsolete emission inventories Eloise Marais (Leicester)
Emissions and Deposition Working Group
Fixes for GFED4 emissions, including:
  • Change the HEMCO cycling flag so that the model crashes if it doesn't find the right GFED year
  • Remove the 27% scaling of POG to POA and emit 1:1 instead
 Sidhant Pai (MIT)
Corrections for CFCs in the chemistry mechanism Xuan Wang (Harvard)
Fix typo in CLD_PARAMS routine in gckpp_HetRates.F90 Stephen Steenrod (NASA GMAO)
Updates that will NOT affect full-chemistry simulations
Enable GEOS-Chem "Classic" netCDF (History) diagnostics to be subsetted vertically and horizontally Bob Yantosca (GCST)
Enable accurate cloud pH diagnostic calculation via post-processing Jonathan Moch (Harvard)
Updates that will only affect GCHP
Update GCHP to use MAPL v1.0.0 and ESMF v8.0.0 beta snapshot 28 Lizzie Lundgren (GCST)
Version, resolution, met fields used: GEOS-FP (72L), 4x5, July 2016
1-month benchmark finished on: Fri May 24 06:51:03 EDT 2019
Performance statistics:
  • Compiled with ifort 17.0.4
  • Ran on 24 CPUs of holyjacob01.rc.fas.harvard.edu (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz)
  • Wall time: TBD
  • CPU time / wall time: TBD
  • % of ideal performance: TBD
  • Memory: TBD
Compared to previous benchmark: 12.4.0
This update will impact:
(select all that apply with boldface) 		Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Emissions, Photolysis, Chemistry, Other (please specify): Diagnostics
Unit test results may be viewed at: TBD
Metrics
Global mean OH from log file (% change): 12.6185673606414 x 105 molec/cm3 (TBD)
Methyl chloroform lifetime (% change): TBD (TBD)
Methane lifetime (% change): TBD years (TBD
max(fractional difference)| > 0.1:
Comments on SURFACE differences: TBD
At 500 hPa, list all species that changed by 10% or more: NO, O3, ALK4, ISOP, HNO3, H2O2, RCHO, MVK, MACR, NPMN, R4N2, PRPE, CH2O, N2O5, HNO4, MP, DMS, SO2, SO4, SO4s, NH3, NIT, NITs, DST1, DST2, DST3, DST4, SALA, SALC, Br2, Br, BrO, HOBr, HBr, BrNO2, BrNO3, MPN, ISOPND, ISOPNB, MOBA, PROPNN, HAC, GLYC, MVKN, MACRN, NO2, NO3, HNO2, TOLU, XYLE, LIMO, TSOG0, ASOG1, ASOG2, ASOG3, ASOA1, ASOA3, SOAP, GLYX, HPALD, DHDN, ETHLN, IEPOXA, IEPOXB, IEPOXD, ISN1, RIPA, RIPB, RIPD, IMAE, SOAME, LVOC, ISN1OG, ISN1OA, MONITS, HONIT, IONITA, IPMN, HC187, BrCl, HCl, Cl, ClO, HOCl, ClNO3, ClNO2, ClOO, OClO, Cl2, Cl2O2, BrSALA, BrSALC, CH2I2, CH2ICl, CH2IBr, HOI, I2, IBr, ICl, I, IO, HI, OIO, INO, IONO, IONO2, I2O2, I2O3, I2O4, ISALA, ISALC, OH, HO2
Comments on 500 hPa differences:
  • See comments for surface differences
max(fractional difference)| > 0.1:
Comments on ZONAL MEAN differences: TBD
max(fractional difference)| > 0.1: TBD
Comments on EMISSIONS differences: TBD
Additional or summary comments:
Approval
Requires further investigation: TBD
Approved by:
Date of approval:

GCHP 1-month benchmark

The following sections contain validation plots for GCHP 12.5.0.

Comparison of GCHP versions

This table contains plots comparing GCHP 12.3.2 (Ref) and GCHP 12.5.0 (Dev) for a 1-month simulation.

Category1 Plots2 Additional Information
Level Map Zonal Mean Emissions
Primary sfc 500hPa full column stratosphere full column
Aerosols sfc 500hPa full column stratosphere full column Column AOD
Bromine sfc 500hPa full column stratosphere full column
Chlorine sfc 500hPa full column stratosphere --
Iodine sfc 500hPa full column stratosphere full column
Nitrogen sfc 500hPa full column stratosphere full column
Primary Organics sfc 500hPa full column stratosphere full column
Secondary Organics sfc 500hPa full column stratosphere full column
Sulfur sfc 500hPa full column stratosphere full column
Emissions by HEMCO category

Aircraft, Anthro, Bioburn, Biofuel, Biogenic,
Lightning, Monoterp, Natural, Ocean, Seabirds, SenescingPlants,
Ship, Soil, Total, VolcDegas, VolcErupt,

Emission totals

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json

Comparison of GCHP and GEOS-Chem Classic

This table contains plots comparing GEOS-Chem Classic 12.5.0 (Ref) against GCHP 12.5.0 (Dev) for a 1-month simulation.

Category1 Plots2 Additional Information
Level Map Zonal Mean Emissions
Primary sfc 500hPa full column stratosphere full column
Aerosols sfc 500hPa full column stratosphere full column Column AOD
Bromine sfc 500hPa full column stratosphere full column
Chlorine sfc 500hPa full column stratosphere --
Iodine sfc 500hPa full column stratosphere full column
Nitrogen sfc 500hPa full column stratosphere full column
Primary Organics sfc 500hPa full column stratosphere full column
Secondary Organics sfc 500hPa full column stratosphere full column
Sulfur sfc 500hPa full column stratosphere full column
Emissions by HEMCO category

Aircraft, Anthro, Bioburn, Biofuel, Biogenic,
Lightning, Monoterp, Natural, Ocean, Seabirds, SenescingPlants,
Ship, Soil, Total, VolcDegas, VolcErupt,

Emission totals

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json


GCHP and GEOS-Chem Classic difference of differences

This table contains plots comparing the difference [GCHP 12.5.0 - GCHP 12.3.2] against the difference [GC Classic 12.5.0 - GC Classic 12.3.0], taken from 1-month benchmark simulations.

Category1 Plots2
Level Map Zonal Mean
Primary sfc 500hPa full column stratosphere
Aerosols sfc 500hPa full column stratosphere
Bromine sfc 500hPa full column stratosphere
Chlorine sfc 500hPa full column stratosphere
Iodine sfc 500hPa full column stratosphere
Nitrogen sfc 500hPa full column stratosphere
Primary Organics sfc 500hPa full column stratosphere
Secondary Organics sfc 500hPa full column stratosphere
Sulfur sfc 500hPa full column stratosphere

1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json

NOTES:

  1. At present, we have only created the diff-of-diffs plots for species concentration. This can be extended to other categories in the future.
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