Difference between revisions of "Benchmark/GEOS-Chem 12.3.2"
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+ | == 1-month benchmark == | ||
+ | |||
+ | === Benchmark assessment form === | ||
+ | |||
+ | {| border=1 cellspacing=0 cellpadding=5 | ||
+ | |-bgcolor="#CCCCCC" | ||
+ | !width="325px"|Description | ||
+ | ! | ||
+ | |-valign="top" | ||
+ | |New features added into GEOS-Chem | ||
+ | | | ||
+ | {| border=1 cellspacing=0 cellpadding=5 | ||
+ | |-bgcolor="#CCCCCC" | ||
+ | !width="500px"|Feature | ||
+ | !width="200px"|Submitted by | ||
+ | |||
+ | |- | ||
+ | !colspan="4" bgcolor="#CCFFFF"|Features affecting the full-chemistry simulation: | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[#Inconsistency in H2402 concentrations in GCHP vs GEOS-Chem Classic|Fix inconsistency for species H2402 between GCHP and GEOS-Chem "Classic"]] | ||
+ | |Sebastian Eastham (MIT)<br>[[GCST]] | ||
+ | |||
+ | |-valign="top" | ||
+ | |Bug fixes for the FAST-JX photolysis mechanism: | ||
+ | *[[FAST-JX_v7.0_photolysis_mechanism#Duplicate_entries_for_species_ClNO2_in_FJX_j2j.dat_file|Remove duplicate entry for species ClNO2 in the FJX_j2j.dat file]] | ||
+ | *[[FAST-JX_v7.0_photolysis_mechanism#Species_DHDC_was_not_listed_as_photolyzing_in_the_species_database|Species DHDC was not listed as photolyzing in the GEOS-Chem species database]] | ||
+ | |Bob Yantosca ([[GCST]]) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Updates and fixes for HEMCO diagnostics, including: | ||
+ | *Enable saving out fertilizer NOx emissions | ||
+ | *Lightning NOx emissions are 3D not, 2D | ||
+ | *HNO3 ship emissions are 2D, not 3D | ||
+ | *Update and fill in missing inventory diagnostics (currently used in only in benchmark simulations) | ||
+ | |Melissa Sulprizio ([[GCST]]) | ||
+ | |||
+ | |- | ||
+ | !colspan="4" bgcolor="#CCFFFF"|Features NOT affecting the full-chemistry simulation: | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[CEDS_anthropogenic_emissions#Updates_introduces_in_GEOS-Chem_12.3.2|Extending the CEDS anthropogenic emissions inventory to include 1750-1949 and additional VOC species]] | ||
+ | |Melissa Sulprizio (GCST) | ||
+ | |||
+ | |- | ||
+ | !colspan="4" bgcolor="#CCFFFF"|Features only affecting GCHP: | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[#Disable Br2 offline seasalt emissions to match GEOS-Chem Classic default|Disable Br2 offline seasalt emissions to match GEOS-Chem Classic default]] | ||
+ | |Sebastian Eastham (MIT) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Assorted GCHP run directory feature updates | ||
+ | *Rename Makefile clean and build options | ||
+ | *Remove deprecated Makefile/build.sh clean and build options | ||
+ | *Remove aliases from sample run scripts | ||
+ | *Remove output file runConfig.log; send to gchp.log instead | ||
+ | *Update benchmark run directory to match GEOS-Chem Classic settings | ||
+ | |Lizzie Lundgren (GCST) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Embed GEOS code within select GCHP files | ||
+ | |Lizzie Lundgren (GCST) | ||
+ | |Structural | ||
+ | |} | ||
+ | |||
+ | |||
+ | |-valign="top" | ||
+ | |Version, resolution, met fields used: | ||
+ | |GEOS-FP (72L), 4x5, July 2016 | ||
+ | |||
+ | |-valign="top" | ||
+ | |1-month benchmark finished on: | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Performance statistics: | ||
+ | | | ||
+ | *Compiled with ifort 17.0.4 | ||
+ | *Ran on _ CPUs of _ (Intel(R) Xeon(R) CPU E5-2680 v3 "Haswell" @ 2.50 GHz) | ||
+ | *Wall time: | ||
+ | *[[Scalability|CPU time / wall time]]: | ||
+ | *% of ideal performance: % | ||
+ | *Memory: TBD GB | ||
+ | |||
+ | |-valign="top" | ||
+ | |Compared to previous benchmark: | ||
+ | |[[GEOS-Chem_12#12.3.0|12.3.0]] | ||
+ | |||
+ | |-valign="top" | ||
+ | |This update will impact:<br>(select all that apply with '''boldface''') | ||
+ | |Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): Volcano emissions | ||
+ | |||
+ | |-valign="top" | ||
+ | |[[GEOS-Chem Unit Tester|Unit test]] results may be viewed at: | ||
+ | | | ||
+ | |||
+ | |-valign="top" bgcolor="#cccccc" | ||
+ | !Metrics | ||
+ | ! | ||
+ | |||
+ | |-valign="top" | ||
+ | |Global mean OH from log file (% change): | ||
+ | |12.5308895343096 x 10<sup>5</sup> molec/cm<sup>3</sup> (0.04%) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Methyl chloroform lifetime (% change): | ||
+ | |4.9406 years (-0.05%) | ||
+ | |||
+ | |-valign="top" | ||
+ | |Methane lifetime (% change): | ||
+ | |8.3253 years (-0.05%) | ||
+ | |||
+ | |-valign="top" | ||
+ | |At the SURFACE, list all species that changed by 10% or more: | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Comments on SURFACE differences: | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Comments on 500 hPa differences: | ||
+ | | | ||
+ | *See comments for surface differences | ||
+ | |||
+ | |-valign="top" | ||
+ | |In the ZONAL MEAN differences, list all species that changed by 10% or more: | ||
+ | |||
+ | |-valign="top" | ||
+ | |Comments on ZONAL MEAN differences: | ||
+ | | | ||
+ | *See comments for surface differences | ||
+ | |||
+ | |-valign="top" | ||
+ | |In the EMISSION RATIO maps, list all species that changed by 10% or more: | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Comments on EMISSION RATIO differences: | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Additional or summary comments: | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Comments on additional differences in GCHP: | ||
+ | |''To be filled out by GCHP WG'' | ||
+ | |||
+ | |-bgcolor="#cccccc" | ||
+ | !Approval | ||
+ | ! | ||
+ | |||
+ | |-valign="top" | ||
+ | |Requires further investigation: | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Approved by: | ||
+ | | | ||
+ | |||
+ | |-valign="top" | ||
+ | |Date of approval: | ||
+ | | | ||
+ | |} | ||
+ | |||
+ | --[[User:Bmy|Bob Yantosca]] ([[User talk:Bmy|talk]]) 20:19, 25 April 2019 (UTC) | ||
+ | |||
== GCHP 1-month benchmark == | == GCHP 1-month benchmark == | ||
Revision as of 20:19, 25 April 2019
Contents
1-month benchmark
Benchmark assessment form
Description | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
New features added into GEOS-Chem |
| |||||||||||||||||||||||||||||
Version, resolution, met fields used: | GEOS-FP (72L), 4x5, July 2016 | |||||||||||||||||||||||||||||
1-month benchmark finished on: | ||||||||||||||||||||||||||||||
Performance statistics: |
| |||||||||||||||||||||||||||||
Compared to previous benchmark: | 12.3.0 | |||||||||||||||||||||||||||||
This update will impact: (select all that apply with boldface) |
Advection, BL Mixing, Convection, Met Fields, Dry Dep, Wet Dep, Stratosphere, Anthro Emiss, Biogenic Emiss, Biomass Emiss, Photolysis, Chemistry, Other (please specify): Volcano emissions | |||||||||||||||||||||||||||||
Unit test results may be viewed at: | ||||||||||||||||||||||||||||||
Metrics | ||||||||||||||||||||||||||||||
Global mean OH from log file (% change): | 12.5308895343096 x 105 molec/cm3 (0.04%) | |||||||||||||||||||||||||||||
Methyl chloroform lifetime (% change): | 4.9406 years (-0.05%) | |||||||||||||||||||||||||||||
Methane lifetime (% change): | 8.3253 years (-0.05%) | |||||||||||||||||||||||||||||
At the SURFACE, list all species that changed by 10% or more: | ||||||||||||||||||||||||||||||
Comments on SURFACE differences: | ||||||||||||||||||||||||||||||
Comments on 500 hPa differences: |
| |||||||||||||||||||||||||||||
In the ZONAL MEAN differences, list all species that changed by 10% or more: | ||||||||||||||||||||||||||||||
Comments on ZONAL MEAN differences: |
| |||||||||||||||||||||||||||||
In the EMISSION RATIO maps, list all species that changed by 10% or more: | ||||||||||||||||||||||||||||||
Comments on EMISSION RATIO differences: | ||||||||||||||||||||||||||||||
Additional or summary comments: | ||||||||||||||||||||||||||||||
Comments on additional differences in GCHP: | To be filled out by GCHP WG | |||||||||||||||||||||||||||||
Approval | ||||||||||||||||||||||||||||||
Requires further investigation: | ||||||||||||||||||||||||||||||
Approved by: | ||||||||||||||||||||||||||||||
Date of approval: |
--Bob Yantosca (talk) 20:19, 25 April 2019 (UTC)
GCHP 1-month benchmark
Comparison of GCHP and GEOS-Chem Classic
NOTE: This section is still under development
This table contains plots comparing GEOS-Chem Classic 12.3.2 (Ref) against GCHP 12.3.2 (Dev) for a 1-month simulation.
Category1 | Plots2 | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Primary | sfc | 500hPa | full column | stratosphere | sfc | |
Aerosols | sfc | 500hPa | full column | stratosphere | sfc | |
Bromine | sfc | 500hPa | full column | stratosphere | sfc | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | sfc | |
Nitrogen | sfc | 500hPa | full column | stratosphere | sfc | |
Primary Organics | sfc | 500hPa | full column | stratosphere | sfc | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | sfc | |
Sulfur | sfc | 500hPa | full column | stratosphere | sfc | |
Emissions by HEMCO category |
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
Comparison of GCHP versions
This table contains plots comparing GCHP 12.2.1 (Ref) and GCHP 12.3.0 (Dev) for a 1-day simulation. This is a prototype only and the real GCHP benchmarks will compare 1-month simulation data.
Category1 | Plots2 | Additional Information | ||||
---|---|---|---|---|---|---|
Level Map | Zonal Mean | Emissions | ||||
Primary | sfc | 500hPa | full column | stratosphere | sfc | |
Aerosols | sfc | 500hPa | full column | stratosphere | sfc | |
Bromine | sfc | 500hPa | full column | stratosphere | sfc | |
Chlorine | sfc | 500hPa | full column | stratosphere | -- | |
Iodine | sfc | 500hPa | full column | stratosphere | sfc | |
Nitrogen | sfc | 500hPa | full column | stratosphere | sfc | |
Primary Organics | sfc | 500hPa | full column | stratosphere | sfc | |
Secondary Organics | sfc | 500hPa | full column | stratosphere | sfc | |
Sulfur | sfc | 500hPa | full column | stratosphere | sfc | |
Emissions by HEMCO category |
Aircraft,
Anthro,
Bioburn,
Biofuel,
Biogenic, |
1Benchmark category definitions: benchmark_categories.json
2Lumped species definitions: lumped_species.json
NOTES:
- Emissions tables generated by gcpy are not currently compatible with cubed-sphere data and so are excluded from the GCHP benchmark.
--Lizzie Lundgren (talk) 17:08, 12 April 2019 (UTC)